RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 FAM186BQ8IYM0 893 aa10.07□□□□□ -0.8
VPS35-211ENST00000569950 LRRC43Q8N309 656 aa10.07□□□□□ -0.8
VPS35-211ENST00000569950 COLGALT1Q8NBJ5 622 aa10.07□□□□□ -0.8
VPS35-211ENST00000569950 RSPH1Q8WYR4 309 aa10.07□□□□□ -0.8
VPS35-211ENST00000569950 CNOT6LQ96LI5 555 aaKnown RBP10.07□□□□□ -0.8
VPS35-211ENST00000569950 YME1L1Q96TA2 773 aa10.07□□□□□ -0.8
VPS35-211ENST00000569950 CGRRF1Q99675 332 aa10.07□□□□□ -0.8
VPS35-211ENST00000569950 TSG101Q99816 390 aa10.07□□□□□ -0.8
VPS35-211ENST00000569950 C17orf80Q9BSJ5 609 aa10.07□□□□□ -0.8
VPS35-211ENST00000569950 MTMR12Q9C0I1 747 aa10.07□□□□□ -0.8
VPS35-211ENST00000569950 NKX2-4Q9H2Z4 354 aa10.07□□□□□ -0.8
VPS35-211ENST00000569950 TTYH1Q9H313 450 aaPredicted RBP10.07□□□□□ -0.8
VPS35-211ENST00000569950 THAP9Q9H5L6 903 aa10.07□□□□□ -0.8
VPS35-211ENST00000569950 FANCLQ9NW38 375 aa10.07□□□□□ -0.8
VPS35-211ENST00000569950 NFE2L3Q9Y4A8 694 aa10.07□□□□□ -0.8
VPS35-211ENST00000569950 CASTOR2A6NHX0 329 aa10.06□□□□□ -0.8
VPS35-211ENST00000569950 C5orf67F2Z3F1 127 aa10.06□□□□□ -0.8
VPS35-211ENST00000569950 PIRO00625 290 aa10.06□□□□□ -0.8
VPS35-211ENST00000569950 LPXNO60711 386 aa10.06□□□□□ -0.8
VPS35-211ENST00000569950 KIF4AO95239 1232 aa10.06□□□□□ -0.8
VPS35-211ENST00000569950 THP07101 528 aa10.06□□□□□ -0.8
VPS35-211ENST00000569950 ATP1A3P13637 1013 aa10.06□□□□□ -0.8
VPS35-211ENST00000569950 CYP3A5P20815 502 aa10.06□□□□□ -0.8
VPS35-211ENST00000569950 DNAJB1P25685 340 aa10.06□□□□□ -0.8
VPS35-211ENST00000569950 RPL13P26373 211 aaKnown RBP10.06□□□□□ -0.8
VPS35-211ENST00000569950 ZNF165P49910 485 aa10.06□□□□□ -0.8
VPS35-211ENST00000569950 CLCNKBP51801 687 aa10.06□□□□□ -0.8
VPS35-211ENST00000569950 VAMP7P51809 220 aa10.06□□□□□ -0.8
VPS35-211ENST00000569950 YARSP54577 528 aaKnown RBP10.06□□□□□ -0.8
VPS35-211ENST00000569950 BCAR1P56945 870 aa10.06□□□□□ -0.8
VPS35-211ENST00000569950 ERVK-21P61565 698 aa10.06□□□□□ -0.8
VPS35-211ENST00000569950 MYL5Q02045 173 aa10.06□□□□□ -0.8
VPS35-211ENST00000569950 TMEM132DQ14C87 1099 aa10.06□□□□□ -0.8
VPS35-211ENST00000569950 ZACNQ401N2 412 aa10.06□□□□□ -0.8
VPS35-211ENST00000569950 CBWD6Q4V339 395 aa10.06□□□□□ -0.8
VPS35-211ENST00000569950 HSP90AA4PQ58FG1 418 aa10.06□□□□□ -0.8
VPS35-211ENST00000569950 CBWD3Q5JTY5 395 aa10.06□□□□□ -0.8
VPS35-211ENST00000569950 CBWD5Q5RIA9 395 aa10.06□□□□□ -0.8
VPS35-211ENST00000569950 KCNT2Q6UVM3 1135 aa10.06□□□□□ -0.8
VPS35-211ENST00000569950 FRMD5Q7Z6J6 570 aa10.06□□□□□ -0.8
VPS35-211ENST00000569950 LUZP1Q86V48 1076 aa10.06□□□□□ -0.8
VPS35-211ENST00000569950 WDR49Q8IV35 697 aa10.06□□□□□ -0.8
VPS35-211ENST00000569950 HACE1Q8IYU2 909 aa10.06□□□□□ -0.8
VPS35-211ENST00000569950 SLC39A11Q8N1S5 342 aa10.06□□□□□ -0.8
VPS35-211ENST00000569950 AOPEPQ8N6M6 819 aa10.06□□□□□ -0.8
VPS35-211ENST00000569950 LMO3Q8TAP4 145 aa10.06□□□□□ -0.8
VPS35-211ENST00000569950 ELMO3Q96BJ8 720 aa10.06□□□□□ -0.8
VPS35-211ENST00000569950 CCDC127Q96BQ5 260 aa10.06□□□□□ -0.8
VPS35-211ENST00000569950 KIF12Q96FN5 646 aa10.06□□□□□ -0.8
VPS35-211ENST00000569950 LRCH3Q96II8 777 aa10.06□□□□□ -0.8
VPS35-211ENST00000569950 TSPAN18Q96SJ8 248 aa10.06□□□□□ -0.8
VPS35-211ENST00000569950 MRPL9Q9BYD2 267 aaKnown RBP10.06□□□□□ -0.8
VPS35-211ENST00000569950 XYLT2Q9H1B5 865 aa10.06□□□□□ -0.8
VPS35-211ENST00000569950 KANSL3Q9P2N6 904 aa10.06□□□□□ -0.8
VPS35-211ENST00000569950 DACH1Q9UI36 760 aa10.06□□□□□ -0.8
VPS35-211ENST00000569950 PLXNA3P51805 1871 aa10.05□□□□□ -0.8
VPS35-211ENST00000569950 NT5C1B-RDH14C9J2C7 533 aa10.05□□□□□ -0.8
VPS35-211ENST00000569950 TMEM189-UBE2V1I3L0A0 370 aa10.05□□□□□ -0.8
VPS35-211ENST00000569950 NRP1O14786 923 aa10.05□□□□□ -0.8
VPS35-211ENST00000569950 CST3P01034 146 aaPredicted RBP10.05□□□□□ -0.8
VPS35-211ENST00000569950 DLATP10515 647 aaKnown RBP10.05□□□□□ -0.8
VPS35-211ENST00000569950 BMPR1AP36894 532 aa10.05□□□□□ -0.8
VPS35-211ENST00000569950 RAB30Q15771 203 aa10.05□□□□□ -0.8
VPS35-211ENST00000569950 C9orf57Q5W0N0 161 aa10.05□□□□□ -0.8
VPS35-211ENST00000569950 INTS8Q75QN2 995 aaKnown RBP10.05□□□□□ -0.8
VPS35-211ENST00000569950 SV2AQ7L0J3 742 aa10.05□□□□□ -0.8
VPS35-211ENST00000569950 TRAPPC11Q7Z392 1133 aa10.05□□□□□ -0.8
VPS35-211ENST00000569950 LIMS2Q7Z4I7 341 aa10.05□□□□□ -0.8
VPS35-211ENST00000569950 NT5DC4Q86YG4 428 aa10.05□□□□□ -0.8
VPS35-211ENST00000569950 FIBCD1Q8N539 461 aa10.05□□□□□ -0.8
VPS35-211ENST00000569950 URGCPQ8TCY9 931 aa10.05□□□□□ -0.8
VPS35-211ENST00000569950 NOC3LQ8WTT2 800 aaKnown RBP10.05□□□□□ -0.8
VPS35-211ENST00000569950 SEMA4DQ92854 862 aa10.05□□□□□ -0.8
VPS35-211ENST00000569950 FAM212AQ96EL1 285 aa10.05□□□□□ -0.8
VPS35-211ENST00000569950 RPS6KC1Q96S38 1066 aa10.05□□□□□ -0.8
VPS35-211ENST00000569950 TMEM175Q9BSA9 504 aa10.05□□□□□ -0.8
VPS35-211ENST00000569950 ZBED2Q9BTP6 218 aa10.05□□□□□ -0.8
VPS35-211ENST00000569950 DPP3Q9NY33 737 aa10.05□□□□□ -0.8
VPS35-211ENST00000569950 ARMCX3Q9UH62 379 aaPredicted RBP10.05□□□□□ -0.8
VPS35-211ENST00000569950 UBQLN1Q9UMX0 589 aaKnown RBP10.05□□□□□ -0.8
VPS35-211ENST00000569950 COQ4Q9Y3A0 265 aa10.05□□□□□ -0.8
VPS35-211ENST00000569950 PTPRDP23468 1912 aa10.05□□□□□ -0.8
VPS35-211ENST00000569950 COL6A3P12111 3177 aa10.04□□□□□ -0.8
VPS35-211ENST00000569950 LRRC10BA6NIK2 292 aa10.04□□□□□ -0.8
VPS35-211ENST00000569950 PODXLO00592 558 aa10.04□□□□□ -0.8
VPS35-211ENST00000569950 PMM2O15305 246 aa10.04□□□□□ -0.8
VPS35-211ENST00000569950 AP5Z1O43299 807 aa10.04□□□□□ -0.8
VPS35-211ENST00000569950 ZC3H11AO75152 810 aaKnown RBP eCLIP10.04□□□□□ -0.8
VPS35-211ENST00000569950 EPB41P11171 864 aaKnown RBP10.04□□□□□ -0.8
VPS35-211ENST00000569950 GCLMP48507 274 aa10.04□□□□□ -0.8
VPS35-211ENST00000569950 TFAMQ00059 246 aaKnown RBP10.04□□□□□ -0.8
VPS35-211ENST00000569950 HSP90AA2PQ14568 343 aaPredicted RBP10.04□□□□□ -0.8
VPS35-211ENST00000569950 KRT31Q15323 416 aa10.04□□□□□ -0.8
VPS35-211ENST00000569950 SURF1Q15526 300 aa10.04□□□□□ -0.8
VPS35-211ENST00000569950 EPC2Q52LR7 807 aa10.04□□□□□ -0.8
VPS35-211ENST00000569950 TCP11X2Q5H9J9 407 aa10.04□□□□□ -0.8
VPS35-211ENST00000569950 HABP4Q5JVS0 413 aaKnown RBP10.04□□□□□ -0.8
VPS35-211ENST00000569950 TAS1R1Q7RTX1 841 aa10.04□□□□□ -0.8
VPS35-211ENST00000569950 ABI1Q8IZP0 508 aa10.04□□□□□ -0.8
VPS35-211ENST00000569950 KLHL23Q8NBE8 558 aa10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms