RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 CUEDC2Q9H467 287 aa22.11■■□□□ 1.13
CLK3-225ENST00000569063 MRPL44Q9H9J2 332 aaKnown RBP22.11■■□□□ 1.13
CLK3-225ENST00000569063 OLFML3Q9NRN5 406 aa22.11■■□□□ 1.13
CLK3-225ENST00000569063 ZDHHC7Q9NXF8 308 aa22.11■■□□□ 1.13
CLK3-225ENST00000569063 MTRRQ9UBK8 725 aa22.11■■□□□ 1.13
CLK3-225ENST00000569063 CPSF3Q9UKF6 684 aaKnown RBP22.11■■□□□ 1.13
CLK3-225ENST00000569063 LACTBL1A8MY62 500 aa22.1■■□□□ 1.13
CLK3-225ENST00000569063 ANKRD63C9JTQ0 380 aa22.1■■□□□ 1.13
CLK3-225ENST00000569063 I3L4J1 428 aa22.1■■□□□ 1.13
CLK3-225ENST00000569063 ADAM12O43184 909 aa22.1■■□□□ 1.13
CLK3-225ENST00000569063 RFPL2O75678 378 aa22.1■■□□□ 1.13
CLK3-225ENST00000569063 TKTP29401 623 aaKnown RBP22.1■■□□□ 1.13
CLK3-225ENST00000569063 PPP2R3AQ06190 1150 aa22.1■■□□□ 1.13
CLK3-225ENST00000569063 E2F4Q16254 413 aa22.1■■□□□ 1.13
CLK3-225ENST00000569063 FOXD4L6Q3SYB3 417 aaPredicted RBP22.1■■□□□ 1.13
CLK3-225ENST00000569063 FOXD4L3Q6VB84 417 aaPredicted RBP22.1■■□□□ 1.13
CLK3-225ENST00000569063 ANKS3Q6ZW76 656 aa22.1■■□□□ 1.13
CLK3-225ENST00000569063 ZDHHC14Q8IZN3 488 aa22.1■■□□□ 1.13
CLK3-225ENST00000569063 PLCD3Q8N3E9 789 aa22.1■■□□□ 1.13
CLK3-225ENST00000569063 TNMDQ9H2S6 317 aa22.1■■□□□ 1.13
CLK3-225ENST00000569063 RPF1Q9H9Y2 349 aaKnown RBP22.1■■□□□ 1.13
CLK3-225ENST00000569063 TUBGCP4Q9UGJ1 667 aa22.1■■□□□ 1.13
CLK3-225ENST00000569063 FBXW11Q9UKB1 542 aa22.1■■□□□ 1.13
CLK3-225ENST00000569063 CFAP45Q9UL16 551 aa22.1■■□□□ 1.13
CLK3-225ENST00000569063 BACE2Q9Y5Z0 518 aa22.1■■□□□ 1.13
CLK3-225ENST00000569063 VWA8A3KMH1 1905 aa22.1■■□□□ 1.13
CLK3-225ENST00000569063 MYBP10242 640 aa22.09■■□□□ 1.13
CLK3-225ENST00000569063 IDEP14735 1019 aa22.09■■□□□ 1.13
CLK3-225ENST00000569063 CYP3A5P20815 502 aa22.09■■□□□ 1.13
CLK3-225ENST00000569063 LRPAP1P30533 357 aa22.09■■□□□ 1.13
CLK3-225ENST00000569063 ZXDAP98168 799 aa22.09■■□□□ 1.13
CLK3-225ENST00000569063 RAB33AQ14088 237 aa22.09■■□□□ 1.13
CLK3-225ENST00000569063 PTPN21Q16825 1174 aa22.09■■□□□ 1.13
CLK3-225ENST00000569063 CCDC149Q6ZUS6 474 aa22.09■■□□□ 1.13
CLK3-225ENST00000569063 CD302Q8IX05 232 aa22.09■■□□□ 1.13
CLK3-225ENST00000569063 TDRD5Q8NAT2 981 aaKnown RBP22.09■■□□□ 1.13
CLK3-225ENST00000569063 ZNF707Q96C28 371 aaPredicted RBP22.09■■□□□ 1.13
CLK3-225ENST00000569063 KIF12Q96FN5 646 aa22.09■■□□□ 1.13
CLK3-225ENST00000569063 LRRC27Q9C0I9 530 aa22.09■■□□□ 1.13
CLK3-225ENST00000569063 PANK4Q9NVE7 773 aa22.09■■□□□ 1.13
CLK3-225ENST00000569063 KBTBD4Q9NVX7 518 aa22.09■■□□□ 1.13
CLK3-225ENST00000569063 UBQLN1Q9UMX0 589 aaKnown RBP22.09■■□□□ 1.13
CLK3-225ENST00000569063 NUB1Q9Y5A7 615 aa22.09■■□□□ 1.13
CLK3-225ENST00000569063 PDCD11Q14690 1871 aaKnown RBP22.09■■□□□ 1.13
CLK3-225ENST00000569063 MTCL1Q9Y4B5 1905 aaKnown RBP22.08■■□□□ 1.13
CLK3-225ENST00000569063 SYN3O14994 580 aa22.08■■□□□ 1.13
CLK3-225ENST00000569063 ZMYND10O75800 440 aa22.08■■□□□ 1.13
CLK3-225ENST00000569063 OR1D2P34982 312 aa22.08■■□□□ 1.13
CLK3-225ENST00000569063 POU5F1Q01860 360 aaKnown RBP22.08■■□□□ 1.13
CLK3-225ENST00000569063 SPAG1Q07617 926 aa22.08■■□□□ 1.13
CLK3-225ENST00000569063 L1TD1Q5T7N2 865 aaKnown RBP22.08■■□□□ 1.13
CLK3-225ENST00000569063 ADALQ6DHV7 355 aa22.08■■□□□ 1.13
CLK3-225ENST00000569063 RSPO2Q6UXX9 243 aaPredicted RBP22.08■■□□□ 1.13
CLK3-225ENST00000569063 IQUBQ8NA54 791 aa22.08■■□□□ 1.13
CLK3-225ENST00000569063 SMG7Q92540 1137 aaKnown RBP22.08■■□□□ 1.13
CLK3-225ENST00000569063 SUSD3Q96L08 255 aa22.08■■□□□ 1.13
CLK3-225ENST00000569063 PRKD2Q9BZL6 878 aa22.08■■□□□ 1.13
CLK3-225ENST00000569063 WDR6Q9NNW5 1121 aaKnown RBP22.08■■□□□ 1.13
CLK3-225ENST00000569063 TBC1D7Q9P0N9 293 aa22.08■■□□□ 1.13
CLK3-225ENST00000569063 EXOC7Q9UPT5 735 aa22.08■■□□□ 1.13
CLK3-225ENST00000569063 PCDHB13Q9Y5F0 798 aa22.08■■□□□ 1.13
CLK3-225ENST00000569063 DENND4AQ7Z401 1863 aa22.08■■□□□ 1.13
CLK3-225ENST00000569063 TISP43B9A030 160 aa22.07■■□□□ 1.12
CLK3-225ENST00000569063 XPOTO43592 962 aaKnown RBP22.07■■□□□ 1.12
CLK3-225ENST00000569063 DNM1Q05193 864 aaKnown RBP22.07■■□□□ 1.12
CLK3-225ENST00000569063 KCNA1Q09470 495 aa22.07■■□□□ 1.12
CLK3-225ENST00000569063 ALCAMQ13740 583 aa22.07■■□□□ 1.12
CLK3-225ENST00000569063 POSTNQ15063 836 aa22.07■■□□□ 1.12
CLK3-225ENST00000569063 OTOP3Q7RTS5 596 aa22.07■■□□□ 1.12
CLK3-225ENST00000569063 CCDC65Q8IXS2 484 aa22.07■■□□□ 1.12
CLK3-225ENST00000569063 ACSF2Q96CM8 615 aaPredicted RBP22.07■■□□□ 1.12
CLK3-225ENST00000569063 ACCSQ96QU6 501 aa22.07■■□□□ 1.12
CLK3-225ENST00000569063 RCOR1Q9UKL0 485 aa22.07■■□□□ 1.12
CLK3-225ENST00000569063 AGO2Q9UKV8 859 aaKnown RBP22.07■■□□□ 1.12
CLK3-225ENST00000569063 PCDHA7Q9UN72 937 aa22.07■■□□□ 1.12
CLK3-225ENST00000569063 CDY1Q9Y6F8 540 aa22.07■■□□□ 1.12
CLK3-225ENST00000569063 C2orf16Q68DN1 1984 aa22.07■■□□□ 1.12
CLK3-225ENST00000569063 GCNT3O95395 438 aa22.06■■□□□ 1.12
CLK3-225ENST00000569063 ADSSP30520 456 aa22.06■■□□□ 1.12
CLK3-225ENST00000569063 HOXA9P31269 272 aa22.06■■□□□ 1.12
CLK3-225ENST00000569063 MCM4P33991 863 aa22.06■■□□□ 1.12
CLK3-225ENST00000569063 ME1P48163 572 aa22.06■■□□□ 1.12
CLK3-225ENST00000569063 ACOT2P49753 483 aa22.06■■□□□ 1.12
CLK3-225ENST00000569063 CASP5P51878 434 aa22.06■■□□□ 1.12
CLK3-225ENST00000569063 AMPD3Q01432 767 aa22.06■■□□□ 1.12
CLK3-225ENST00000569063 MRPL58Q14197 206 aaKnown RBP22.06■■□□□ 1.12
CLK3-225ENST00000569063 VARS2Q5ST30 1063 aaKnown RBP22.06■■□□□ 1.12
CLK3-225ENST00000569063 SLC8B1Q6J4K2 584 aa22.06■■□□□ 1.12
CLK3-225ENST00000569063 CNNM4Q6P4Q7 775 aa22.06■■□□□ 1.12
CLK3-225ENST00000569063 TRIM67Q6ZTA4 783 aa22.06■■□□□ 1.12
CLK3-225ENST00000569063 STAMQ92783 540 aa22.06■■□□□ 1.12
CLK3-225ENST00000569063 DHX58Q96C10 678 aa22.06■■□□□ 1.12
CLK3-225ENST00000569063 IKZF4Q9H2S9 585 aa22.06■■□□□ 1.12
CLK3-225ENST00000569063 DERAQ9Y315 318 aa22.06■■□□□ 1.12
CLK3-225ENST00000569063 TBC1D4O60343 1298 aa22.05■■□□□ 1.12
CLK3-225ENST00000569063 HNRNPA1P09651 372 aaKnown RBP eCLIP22.05■■□□□ 1.12
CLK3-225ENST00000569063 UVSSAQ2YD98 709 aa22.05■■□□□ 1.12
CLK3-225ENST00000569063 LIN9Q5TKA1 542 aa22.05■■□□□ 1.12
CLK3-225ENST00000569063 SPATA1Q5VX52 437 aa22.05■■□□□ 1.12
CLK3-225ENST00000569063 RTL10Q7L3V2 364 aa22.05■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms