RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 TXNP10599 105 aaKnown RBP21.69■■□□□ 1.06
CLN3-230ENST00000568076 RRM1P23921 792 aa21.69■■□□□ 1.06
CLN3-230ENST00000568076 DR1Q01658 176 aa21.69■■□□□ 1.06
CLN3-230ENST00000568076 CENPCQ03188 943 aa21.69■■□□□ 1.06
CLN3-230ENST00000568076 MXD4Q14582 209 aaPredicted RBP21.69■■□□□ 1.06
CLN3-230ENST00000568076 C2CD6Q53TS8 623 aa21.69■■□□□ 1.06
CLN3-230ENST00000568076 DPY19L2Q6NUT2 758 aa21.69■■□□□ 1.06
CLN3-230ENST00000568076 LLGL2Q6P1M3 1020 aa21.69■■□□□ 1.06
CLN3-230ENST00000568076 TMEM270Q6UE05 265 aa21.69■■□□□ 1.06
CLN3-230ENST00000568076 DPH5Q9H2P9 285 aa21.69■■□□□ 1.06
CLN3-230ENST00000568076 CNTN6Q9UQ52 1028 aa21.69■■□□□ 1.06
CLN3-230ENST00000568076 UTP11Q9Y3A2 253 aaKnown RBP21.69■■□□□ 1.06
CLN3-230ENST00000568076 PCDHB4Q9Y5E5 795 aa21.69■■□□□ 1.06
CLN3-230ENST00000568076 CCDC66A2RUB6 948 aa21.68■■□□□ 1.06
CLN3-230ENST00000568076 GAS2O43903 313 aaKnown RBP21.68■■□□□ 1.06
CLN3-230ENST00000568076 CYP2C8P10632 490 aa21.68■■□□□ 1.06
CLN3-230ENST00000568076 CAPN2P17655 700 aa21.68■■□□□ 1.06
CLN3-230ENST00000568076 PPP2R5EQ16537 467 aa21.68■■□□□ 1.06
CLN3-230ENST00000568076 PHLDB2Q86SQ0 1253 aa21.68■■□□□ 1.06
CLN3-230ENST00000568076 FAM76AQ8TAV0 307 aa21.68■■□□□ 1.06
CLN3-230ENST00000568076 ZNF668Q96K58 619 aaPredicted RBP21.68■■□□□ 1.06
CLN3-230ENST00000568076 TCHPQ9BT92 498 aa21.68■■□□□ 1.06
CLN3-230ENST00000568076 AVENQ9NQS1 362 aaPredicted RBP21.68■■□□□ 1.06
CLN3-230ENST00000568076 TCRBV7S2A1N4TA0A589 114 aa21.68■■□□□ 1.06
CLN3-230ENST00000568076 MCL1Q07820 350 aa21.68■■□□□ 1.06
CLN3-230ENST00000568076 PPFIA1Q13136 1202 aa21.68■■□□□ 1.06
CLN3-230ENST00000568076 UAP1Q16222 522 aaPredicted RBP21.68■■□□□ 1.06
CLN3-230ENST00000568076 LDLRAD1Q5T700 205 aa21.68■■□□□ 1.06
CLN3-230ENST00000568076 MON1BQ7L1V2 547 aa21.68■■□□□ 1.06
CLN3-230ENST00000568076 ARMC9Q7Z3E5 817 aa21.68■■□□□ 1.06
CLN3-230ENST00000568076 RHPN2Q8IUC4 686 aa21.68■■□□□ 1.06
CLN3-230ENST00000568076 ZBTB8OSQ8IWT0 167 aa21.68■■□□□ 1.06
CLN3-230ENST00000568076 CD302Q8IX05 232 aa21.68■■□□□ 1.06
CLN3-230ENST00000568076 GOLGA6L1Q8N7Z2 621 aa21.68■■□□□ 1.06
CLN3-230ENST00000568076 RBBP8NLQ8NC74 664 aaPredicted RBP21.68■■□□□ 1.06
CLN3-230ENST00000568076 C18orf8Q96DM3 657 aa21.68■■□□□ 1.06
CLN3-230ENST00000568076 ANAPC7Q9UJX3 599 aa21.68■■□□□ 1.06
CLN3-230ENST00000568076 PHF2O75151 1096 aa21.67■■□□□ 1.06
CLN3-230ENST00000568076 MAPK6Q16659 721 aa21.67■■□□□ 1.06
CLN3-230ENST00000568076 SEL1L2Q5TEA6 688 aa21.67■■□□□ 1.06
CLN3-230ENST00000568076 WDR49Q8IV35 697 aa21.67■■□□□ 1.06
CLN3-230ENST00000568076 TRIM31Q9BZY9 425 aa21.67■■□□□ 1.06
CLN3-230ENST00000568076 MTMR12Q9C0I1 747 aa21.67■■□□□ 1.06
CLN3-230ENST00000568076 FAM114A2Q9NRY5 505 aa21.67■■□□□ 1.06
CLN3-230ENST00000568076 CPSF3Q9UKF6 684 aaKnown RBP21.67■■□□□ 1.06
CLN3-230ENST00000568076 OGTO15294 1046 aa21.67■■□□□ 1.06
CLN3-230ENST00000568076 HSPA6P17066 643 aa21.67■■□□□ 1.06
CLN3-230ENST00000568076 TBXAS1P24557 533 aaPredicted RBP21.67■■□□□ 1.06
CLN3-230ENST00000568076 GNA15P30679 374 aa21.67■■□□□ 1.06
CLN3-230ENST00000568076 MAPK4P31152 587 aa21.67■■□□□ 1.06
CLN3-230ENST00000568076 SSTR3P32745 418 aaPredicted RBP21.67■■□□□ 1.06
CLN3-230ENST00000568076 HSD17B3P37058 310 aa21.67■■□□□ 1.06
CLN3-230ENST00000568076 NSFP46459 744 aaKnown RBP21.67■■□□□ 1.06
CLN3-230ENST00000568076 GRM1Q13255 1194 aa21.67■■□□□ 1.06
CLN3-230ENST00000568076 DUPD1Q68J44 220 aa21.67■■□□□ 1.06
CLN3-230ENST00000568076 TTC27Q6P3X3 843 aa21.67■■□□□ 1.06
CLN3-230ENST00000568076 PASD1Q8IV76 773 aa21.67■■□□□ 1.06
CLN3-230ENST00000568076 ABRAQ8N0Z2 381 aa21.67■■□□□ 1.06
CLN3-230ENST00000568076 UBR7Q8N806 425 aa21.67■■□□□ 1.06
CLN3-230ENST00000568076 ASS1P00966 412 aaKnown RBP21.66■■□□□ 1.06
CLN3-230ENST00000568076 MYBL1P10243 752 aa21.66■■□□□ 1.06
CLN3-230ENST00000568076 PROZP22891 400 aa21.66■■□□□ 1.06
CLN3-230ENST00000568076 ACTN2P35609 894 aa21.66■■□□□ 1.06
CLN3-230ENST00000568076 PTGIRP43119 386 aa21.66■■□□□ 1.06
CLN3-230ENST00000568076 RWDD2BP57060 319 aa21.66■■□□□ 1.06
CLN3-230ENST00000568076 NOMO3P69849 1222 aa21.66■■□□□ 1.06
CLN3-230ENST00000568076 SNAPC2Q13487 334 aa21.66■■□□□ 1.06
CLN3-230ENST00000568076 DHX34Q14147 1143 aaKnown RBP21.66■■□□□ 1.06
CLN3-230ENST00000568076 SIX1Q15475 284 aaPredicted RBP21.66■■□□□ 1.06
CLN3-230ENST00000568076 SLC13A5Q86YT5 568 aaPredicted RBP21.66■■□□□ 1.06
CLN3-230ENST00000568076 JAMLQ86YT9 394 aa21.66■■□□□ 1.06
CLN3-230ENST00000568076 EXOC8Q8IYI6 725 aa21.66■■□□□ 1.06
CLN3-230ENST00000568076 SHCBP1Q8NEM2 672 aa21.66■■□□□ 1.06
CLN3-230ENST00000568076 ERP44Q9BS26 406 aa21.66■■□□□ 1.06
CLN3-230ENST00000568076 RAB17Q9H0T7 212 aa21.66■■□□□ 1.06
CLN3-230ENST00000568076 RNPEPQ9H4A4 650 aa21.66■■□□□ 1.06
CLN3-230ENST00000568076 SMARCAD1Q9H4L7 1026 aa21.66■■□□□ 1.06
CLN3-230ENST00000568076 PTPRHQ9HD43 1115 aa21.66■■□□□ 1.06
CLN3-230ENST00000568076 SLTMQ9NWH9 1034 aaKnown RBP eCLIP21.66■■□□□ 1.06
CLN3-230ENST00000568076 PLAAQ9Y263 795 aa21.66■■□□□ 1.06
CLN3-230ENST00000568076 FAM187AA6NFU0 413 aa21.65■■□□□ 1.06
CLN3-230ENST00000568076 B4GALT5O43286 388 aa21.65■■□□□ 1.06
CLN3-230ENST00000568076 SLC26A2P50443 739 aa21.65■■□□□ 1.06
CLN3-230ENST00000568076 CLCN3P51790 818 aa21.65■■□□□ 1.06
CLN3-230ENST00000568076 TTLL4Q14679 1199 aa21.65■■□□□ 1.06
CLN3-230ENST00000568076 EAPPQ56P03 285 aaPredicted RBP21.65■■□□□ 1.06
CLN3-230ENST00000568076 GJC2Q5T442 439 aaPredicted RBP21.65■■□□□ 1.06
CLN3-230ENST00000568076 ARMCX2Q7L311 632 aa21.65■■□□□ 1.06
CLN3-230ENST00000568076 FAM212AQ96EL1 285 aa21.65■■□□□ 1.06
CLN3-230ENST00000568076 NLRP4Q96MN2 994 aa21.65■■□□□ 1.06
CLN3-230ENST00000568076 C2orf40Q9H1Z8 148 aa21.65■■□□□ 1.06
CLN3-230ENST00000568076 FZD8Q9H461 694 aa21.65■■□□□ 1.06
CLN3-230ENST00000568076 H0YGN5 161 aa21.65■■□□□ 1.06
CLN3-230ENST00000568076 CHRNA3P32297 505 aa21.65■■□□□ 1.06
CLN3-230ENST00000568076 ZNF132P52740 706 aa21.65■■□□□ 1.06
CLN3-230ENST00000568076 AP3M2P53677 418 aa21.65■■□□□ 1.06
CLN3-230ENST00000568076 EFCAB12Q6NXP0 572 aa21.65■■□□□ 1.06
CLN3-230ENST00000568076 TSHZ1Q6ZSZ6 1077 aa21.65■■□□□ 1.06
CLN3-230ENST00000568076 MAGOHBQ96A72 148 aaKnown RBP21.65■■□□□ 1.06
CLN3-230ENST00000568076 LRRC45Q96CN5 670 aa21.65■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms