RNA–Protein interactions for RNA: ENST00000567992.1

CLK3-220, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 603 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-220ENST00000567992 KANK3Q6NY19 840 aa10.65□□□□□ -0.7
CLK3-220ENST00000567992 ARMCX5Q6P1M9 558 aa10.65□□□□□ -0.7
CLK3-220ENST00000567992 DCLRE1AQ6PJP8 1040 aa10.65□□□□□ -0.7
CLK3-220ENST00000567992 CLEC17AQ6ZS10 378 aa10.65□□□□□ -0.7
CLK3-220ENST00000567992 CD302Q8IX05 232 aa10.65□□□□□ -0.7
CLK3-220ENST00000567992 C12orf56Q8IXR9 622 aa10.65□□□□□ -0.7
CLK3-220ENST00000567992 SPATA20Q8TB22 786 aa10.65□□□□□ -0.7
CLK3-220ENST00000567992 ATXN2LQ8WWM7 1075 aaKnown RBP10.65□□□□□ -0.7
CLK3-220ENST00000567992 PPP2R3CQ969Q6 453 aa10.65□□□□□ -0.7
CLK3-220ENST00000567992 KIF12Q96FN5 646 aa10.65□□□□□ -0.7
CLK3-220ENST00000567992 MSLNLQ96KJ4 702 aa10.65□□□□□ -0.7
CLK3-220ENST00000567992 FAM84AQ96KN4 292 aa10.65□□□□□ -0.7
CLK3-220ENST00000567992 CDCA3Q99618 268 aaPredicted RBP10.65□□□□□ -0.7
CLK3-220ENST00000567992 FAM213AQ9BRX8 229 aa10.65□□□□□ -0.7
CLK3-220ENST00000567992 KCTD10Q9H3F6 313 aa10.65□□□□□ -0.7
CLK3-220ENST00000567992 PCIF1Q9H4Z3 704 aa10.65□□□□□ -0.7
CLK3-220ENST00000567992 ASB7Q9H672 318 aa10.65□□□□□ -0.7
CLK3-220ENST00000567992 RXFP1Q9HBX9 757 aa10.65□□□□□ -0.7
CLK3-220ENST00000567992 HSPBP1Q9NZL4 362 aa10.65□□□□□ -0.7
CLK3-220ENST00000567992 BARX2Q9UMQ3 279 aaPredicted RBP10.65□□□□□ -0.7
CLK3-220ENST00000567992 UBQLN1Q9UMX0 589 aaKnown RBP10.65□□□□□ -0.7
CLK3-220ENST00000567992 DERAQ9Y315 318 aa10.65□□□□□ -0.7
CLK3-220ENST00000567992 C2CD2Q9Y426 696 aa10.65□□□□□ -0.7
CLK3-220ENST00000567992 SCN1AP35498 2009 aa10.65□□□□□ -0.71
CLK3-220ENST00000567992 CUL9Q8IWT3 2517 aa10.64□□□□□ -0.71
CLK3-220ENST00000567992 PTPRJQ12913 1337 aa10.64□□□□□ -0.71
CLK3-220ENST00000567992 H3BQ06 376 aaPredicted RBP10.64□□□□□ -0.71
CLK3-220ENST00000567992 I3L4J1 428 aa10.64□□□□□ -0.71
CLK3-220ENST00000567992 KIAA0391O15091 583 aaKnown RBP10.64□□□□□ -0.71
CLK3-220ENST00000567992 NCK2O43639 380 aa10.64□□□□□ -0.71
CLK3-220ENST00000567992 TADA2AO75478 443 aa10.64□□□□□ -0.71
CLK3-220ENST00000567992 B3GAT3O94766 335 aa10.64□□□□□ -0.71
CLK3-220ENST00000567992 URODP06132 367 aa10.64□□□□□ -0.71
CLK3-220ENST00000567992 CNPP09543 421 aaKnown RBP10.64□□□□□ -0.71
CLK3-220ENST00000567992 FGFR3P22607 806 aa10.64□□□□□ -0.71
CLK3-220ENST00000567992 RPL9P32969 192 aaKnown RBP10.64□□□□□ -0.71
CLK3-220ENST00000567992 BRCC3P46736 316 aa10.64□□□□□ -0.71
CLK3-220ENST00000567992 KCNQ1P51787 676 aa10.64□□□□□ -0.71
CLK3-220ENST00000567992 SNRPFP62306 86 aaKnown RBP10.64□□□□□ -0.71
CLK3-220ENST00000567992 TMEM132DQ14C87 1099 aa10.64□□□□□ -0.71
CLK3-220ENST00000567992 KNOP1Q1ED39 458 aaKnown RBP10.64□□□□□ -0.71
CLK3-220ENST00000567992 USP41Q3LFD5 358 aa10.64□□□□□ -0.71
CLK3-220ENST00000567992 LEXMQ3ZCV2 418 aa10.64□□□□□ -0.71
CLK3-220ENST00000567992 FAM171A1Q5VUB5 890 aa10.64□□□□□ -0.71
CLK3-220ENST00000567992 SPATA1Q5VX52 437 aa10.64□□□□□ -0.71
CLK3-220ENST00000567992 TMEM184AQ6ZMB5 413 aa10.64□□□□□ -0.71
CLK3-220ENST00000567992 CBWD2Q8IUF1 395 aa10.64□□□□□ -0.71
CLK3-220ENST00000567992 ELOA2Q8IYF1 753 aaPredicted RBP10.64□□□□□ -0.71
CLK3-220ENST00000567992 GPR65Q8IYL9 337 aa10.64□□□□□ -0.71
CLK3-220ENST00000567992 GPD1LQ8N335 351 aa10.64□□□□□ -0.71
CLK3-220ENST00000567992 GADD45GIP1Q8TAE8 222 aaPredicted RBP10.64□□□□□ -0.71
CLK3-220ENST00000567992 SLC22A17Q8WUG5 538 aa10.64□□□□□ -0.71
CLK3-220ENST00000567992 TMEM174Q8WUU8 243 aa10.64□□□□□ -0.71
CLK3-220ENST00000567992 ERCC4Q92889 916 aaPredicted RBP10.64□□□□□ -0.71
CLK3-220ENST00000567992 DDX27Q96GQ7 796 aaKnown RBP10.64□□□□□ -0.71
CLK3-220ENST00000567992 KLHL5Q96PQ7 755 aa10.64□□□□□ -0.71
CLK3-220ENST00000567992 ASB2Q96Q27 587 aa10.64□□□□□ -0.71
CLK3-220ENST00000567992 TSPAN18Q96SJ8 248 aa10.64□□□□□ -0.71
CLK3-220ENST00000567992 GZF1Q9H116 711 aaPredicted RBP10.64□□□□□ -0.71
CLK3-220ENST00000567992 MRPL17Q9NRX2 175 aaKnown RBP10.64□□□□□ -0.71
CLK3-220ENST00000567992 RBAKQ9NYW8 714 aaPredicted RBP10.64□□□□□ -0.71
CLK3-220ENST00000567992 HCFC2Q9Y5Z7 792 aa10.64□□□□□ -0.71
CLK3-220ENST00000567992 TCF20Q9UGU0 1960 aaKnown RBP10.63□□□□□ -0.71
CLK3-220ENST00000567992 MTCL1Q9Y4B5 1905 aaKnown RBP10.63□□□□□ -0.71
CLK3-220ENST00000567992 ANO9A1A5B4 782 aa10.63□□□□□ -0.71
CLK3-220ENST00000567992 PIRO00625 290 aa10.63□□□□□ -0.71
CLK3-220ENST00000567992 C2CD2LO14523 706 aa10.63□□□□□ -0.71
CLK3-220ENST00000567992 CLIC2O15247 247 aa10.63□□□□□ -0.71
CLK3-220ENST00000567992 TEX28O15482 410 aa10.63□□□□□ -0.71
CLK3-220ENST00000567992 IL18RAPO95256 599 aa10.63□□□□□ -0.71
CLK3-220ENST00000567992 LDHAP00338 332 aaKnown RBP10.63□□□□□ -0.71
CLK3-220ENST00000567992 BMP1P13497 986 aa10.63□□□□□ -0.71
CLK3-220ENST00000567992 EPCAMP16422 314 aa10.63□□□□□ -0.71
CLK3-220ENST00000567992 TKTP29401 623 aaKnown RBP10.63□□□□□ -0.71
CLK3-220ENST00000567992 AARSP49588 968 aaKnown RBP eCLIP10.63□□□□□ -0.71
CLK3-220ENST00000567992 UBE2HP62256 183 aa10.63□□□□□ -0.71
CLK3-220ENST00000567992 MRPS5P82675 430 aaKnown RBP10.63□□□□□ -0.71
CLK3-220ENST00000567992 ELAVL2Q12926 359 aaKnown RBP10.63□□□□□ -0.71
CLK3-220ENST00000567992 ZCWPW2Q504Y3 356 aa10.63□□□□□ -0.71
CLK3-220ENST00000567992 C9orf57Q5W0N0 161 aa10.63□□□□□ -0.71
CLK3-220ENST00000567992 SCARA3Q6AZY7 606 aa10.63□□□□□ -0.71
CLK3-220ENST00000567992 LLGL2Q6P1M3 1020 aa10.63□□□□□ -0.71
CLK3-220ENST00000567992 PRSS55Q6UWB4 352 aaPredicted RBP10.63□□□□□ -0.71
CLK3-220ENST00000567992 PDZRN4Q6ZMN7 1036 aaPredicted RBP10.63□□□□□ -0.71
CLK3-220ENST00000567992 HS2ST1Q7LGA3 356 aa10.63□□□□□ -0.71
CLK3-220ENST00000567992 SMYD4Q8IYR2 804 aaPredicted RBP10.63□□□□□ -0.71
CLK3-220ENST00000567992 CXorf38Q8TB03 319 aa10.63□□□□□ -0.71
CLK3-220ENST00000567992 LNX1Q8TBB1 728 aaPredicted RBP10.63□□□□□ -0.71
CLK3-220ENST00000567992 FEZF2Q8TBJ5 459 aa10.63□□□□□ -0.71
CLK3-220ENST00000567992 RIN2Q8WYP3 895 aaPredicted RBP10.63□□□□□ -0.71
CLK3-220ENST00000567992 PIK3R5Q8WYR1 880 aa10.63□□□□□ -0.71
CLK3-220ENST00000567992 FAM212AQ96EL1 285 aa10.63□□□□□ -0.71
CLK3-220ENST00000567992 TTPALQ9BTX7 342 aa10.63□□□□□ -0.71
CLK3-220ENST00000567992 DMAC2Q9NW81 257 aa10.63□□□□□ -0.71
CLK3-220ENST00000567992 CGNQ9P2M7 1197 aaKnown RBP10.63□□□□□ -0.71
CLK3-220ENST00000567992 GTF3C5Q9Y5Q8 519 aaPredicted RBP10.63□□□□□ -0.71
CLK3-220ENST00000567992 DENND4AQ7Z401 1863 aa10.63□□□□□ -0.71
CLK3-220ENST00000567992 FSD2A1L4K1 749 aa10.62□□□□□ -0.71
CLK3-220ENST00000567992 M0QZQ0 153 aa10.62□□□□□ -0.71
CLK3-220ENST00000567992 PDXKO00764 312 aa10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms