RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 CEBPZQ03701 1054 aaKnown RBP16.23■□□□□ 0.19
CLN3-213ENST00000565047 MTMR3Q13615 1198 aa16.23■□□□□ 0.19
CLN3-213ENST00000565047 ENOX2Q16206 610 aaKnown RBP16.23■□□□□ 0.19
CLN3-213ENST00000565047 ZC2HC1CQ53FD0 456 aaPredicted RBP16.23■□□□□ 0.19
CLN3-213ENST00000565047 IER5LQ5T953 404 aa16.23■□□□□ 0.19
CLN3-213ENST00000565047 ZNF720Q7Z2F6 126 aa16.23■□□□□ 0.19
CLN3-213ENST00000565047 FBXL6Q8N531 539 aa16.23■□□□□ 0.19
CLN3-213ENST00000565047 LINC00301Q8NCQ3 95 aa16.23■□□□□ 0.19
CLN3-213ENST00000565047 ACSF2Q96CM8 615 aaPredicted RBP16.23■□□□□ 0.19
CLN3-213ENST00000565047 MYADMQ96S97 322 aa16.23■□□□□ 0.19
CLN3-213ENST00000565047 KCNK12Q9HB15 430 aa16.23■□□□□ 0.19
CLN3-213ENST00000565047 STK17AQ9UEE5 414 aa16.23■□□□□ 0.19
CLN3-213ENST00000565047 TUBGCP4Q9UGJ1 667 aa16.23■□□□□ 0.19
CLN3-213ENST00000565047 CPSF3Q9UKF6 684 aaKnown RBP16.23■□□□□ 0.19
CLN3-213ENST00000565047 CITO14578 2027 aa16.23■□□□□ 0.19
CLN3-213ENST00000565047 MUC6Q6W4X9 2439 aa16.22■□□□□ 0.19
CLN3-213ENST00000565047 ANKRD63C9JTQ0 380 aa16.22■□□□□ 0.19
CLN3-213ENST00000565047 K7ENM7 598 aa16.22■□□□□ 0.19
CLN3-213ENST00000565047 TRAPPC3O43617 180 aa16.22■□□□□ 0.19
CLN3-213ENST00000565047 ABLIM3O94929 683 aa16.22■□□□□ 0.19
CLN3-213ENST00000565047 HNRNPA1P09651 372 aaKnown RBP eCLIP16.22■□□□□ 0.19
CLN3-213ENST00000565047 SPAG1Q07617 926 aa16.22■□□□□ 0.19
CLN3-213ENST00000565047 UVSSAQ2YD98 709 aa16.22■□□□□ 0.19
CLN3-213ENST00000565047 VARS2Q5ST30 1063 aaKnown RBP16.22■□□□□ 0.19
CLN3-213ENST00000565047 ELMSAN1Q6PJG2 1045 aa16.22■□□□□ 0.19
CLN3-213ENST00000565047 ANKS3Q6ZW76 656 aa16.22■□□□□ 0.19
CLN3-213ENST00000565047 DDX12PQ92771 950 aa16.22■□□□□ 0.19
CLN3-213ENST00000565047 FAM122AQ96E09 287 aa16.22■□□□□ 0.19
CLN3-213ENST00000565047 SUSD3Q96L08 255 aa16.22■□□□□ 0.19
CLN3-213ENST00000565047 IKZF4Q9H2S9 585 aa16.22■□□□□ 0.19
CLN3-213ENST00000565047 CDY1Q9Y6F8 540 aa16.22■□□□□ 0.19
CLN3-213ENST00000565047 FRMD3A2A2Y4 597 aa16.21■□□□□ 0.19
CLN3-213ENST00000565047 SPDYE4A6NLX3 237 aa16.21■□□□□ 0.19
CLN3-213ENST00000565047 LACTBL1A8MY62 500 aa16.21■□□□□ 0.19
CLN3-213ENST00000565047 TISP43B9A030 160 aa16.21■□□□□ 0.19
CLN3-213ENST00000565047 ANHXE9PGG2 379 aa16.21■□□□□ 0.19
CLN3-213ENST00000565047 HNRNPDLO14979 420 aaKnown RBP16.21■□□□□ 0.19
CLN3-213ENST00000565047 SYN3O14994 580 aa16.21■□□□□ 0.19
CLN3-213ENST00000565047 OGTO15294 1046 aa16.21■□□□□ 0.19
CLN3-213ENST00000565047 C8AP07357 584 aa16.21■□□□□ 0.19
CLN3-213ENST00000565047 CYP3A5P20815 502 aa16.21■□□□□ 0.19
CLN3-213ENST00000565047 ADSSP30520 456 aa16.21■□□□□ 0.19
CLN3-213ENST00000565047 AARSP49588 968 aaKnown RBP eCLIP16.21■□□□□ 0.19
CLN3-213ENST00000565047 LIG4P49917 911 aa16.21■□□□□ 0.19
CLN3-213ENST00000565047 VCPP55072 806 aaKnown RBP16.21■□□□□ 0.19
CLN3-213ENST00000565047 KYAT1Q16773 422 aa16.21■□□□□ 0.19
CLN3-213ENST00000565047 AXDND1Q5T1B0 1012 aaPredicted RBP16.21■□□□□ 0.19
CLN3-213ENST00000565047 RRAGBQ5VZM2 374 aa16.21■□□□□ 0.19
CLN3-213ENST00000565047 RTL10Q7L3V2 364 aa16.21■□□□□ 0.19
CLN3-213ENST00000565047 KRI1Q8N9T8 703 aaKnown RBP16.21■□□□□ 0.19
CLN3-213ENST00000565047 CCDC39Q9UFE4 941 aa16.21■□□□□ 0.19
CLN3-213ENST00000565047 DOCK8Q8NF50 2099 aa16.21■□□□□ 0.19
CLN3-213ENST00000565047 KMT2EQ8IZD2 1858 aa16.2■□□□□ 0.18
CLN3-213ENST00000565047 NOTCH4Q99466 2003 aa16.2■□□□□ 0.18
CLN3-213ENST00000565047 WDR27A2RRH5 827 aa16.2■□□□□ 0.18
CLN3-213ENST00000565047 M0QZQ0 153 aa16.2■□□□□ 0.18
CLN3-213ENST00000565047 LAMP2P13473 410 aa16.2■□□□□ 0.18
CLN3-213ENST00000565047 HOXD11P31277 338 aaPredicted RBP16.2■□□□□ 0.18
CLN3-213ENST00000565047 ROR1Q01973 937 aa16.2■□□□□ 0.18
CLN3-213ENST00000565047 KCNA1Q09470 495 aa16.2■□□□□ 0.18
CLN3-213ENST00000565047 TDGQ13569 410 aa16.2■□□□□ 0.18
CLN3-213ENST00000565047 CRELD2Q6UXH1 353 aaPredicted RBP16.2■□□□□ 0.18
CLN3-213ENST00000565047 DYMQ7RTS9 669 aa16.2■□□□□ 0.18
CLN3-213ENST00000565047 SFR1Q86XK3 245 aa16.2■□□□□ 0.18
CLN3-213ENST00000565047 PRSS33Q8NF86 280 aa16.2■□□□□ 0.18
CLN3-213ENST00000565047 RASSF8Q8NHQ8 419 aa16.2■□□□□ 0.18
CLN3-213ENST00000565047 ZNF461Q8TAF7 563 aa16.2■□□□□ 0.18
CLN3-213ENST00000565047 RSAD2Q8WXG1 361 aa16.2■□□□□ 0.18
CLN3-213ENST00000565047 TSPAN18Q96SJ8 248 aa16.2■□□□□ 0.18
CLN3-213ENST00000565047 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP16.2■□□□□ 0.18
CLN3-213ENST00000565047 IGSF9Q9P2J2 1179 aa16.2■□□□□ 0.18
CLN3-213ENST00000565047 DUSP12Q9UNI6 340 aa16.2■□□□□ 0.18
CLN3-213ENST00000565047 DOCK6Q96HP0 2047 aa16.19■□□□□ 0.18
CLN3-213ENST00000565047 DMDP11532 3685 aa16.19■□□□□ 0.18
CLN3-213ENST00000565047 ARHGEF37A1IGU5 675 aa16.19■□□□□ 0.18
CLN3-213ENST00000565047 TBCAO75347 108 aaKnown RBP16.19■□□□□ 0.18
CLN3-213ENST00000565047 KRT18P05783 430 aaKnown RBP16.19■□□□□ 0.18
CLN3-213ENST00000565047 AVPR2P30518 371 aa16.19■□□□□ 0.18
CLN3-213ENST00000565047 ABCD1P33897 745 aa16.19■□□□□ 0.18
CLN3-213ENST00000565047 GUCY2FP51841 1108 aa16.19■□□□□ 0.18
CLN3-213ENST00000565047 NTHL1P78549 312 aa16.19■□□□□ 0.18
CLN3-213ENST00000565047 E2F4Q16254 413 aa16.19■□□□□ 0.18
CLN3-213ENST00000565047 PPM1LQ5SGD2 360 aa16.19■□□□□ 0.18
CLN3-213ENST00000565047 SPATA1Q5VX52 437 aa16.19■□□□□ 0.18
CLN3-213ENST00000565047 POTEHQ6S545 545 aa16.19■□□□□ 0.18
CLN3-213ENST00000565047 SV2BQ7L1I2 683 aa16.19■□□□□ 0.18
CLN3-213ENST00000565047 GRASPQ7Z6J2 395 aaPredicted RBP16.19■□□□□ 0.18
CLN3-213ENST00000565047 SLC7A14Q8TBB6 771 aa16.19■□□□□ 0.18
CLN3-213ENST00000565047 STAMQ92783 540 aa16.19■□□□□ 0.18
CLN3-213ENST00000565047 KIF12Q96FN5 646 aa16.19■□□□□ 0.18
CLN3-213ENST00000565047 BICD1Q96G01 975 aa16.19■□□□□ 0.18
CLN3-213ENST00000565047 FGFBP2Q9BYJ0 223 aa16.19■□□□□ 0.18
CLN3-213ENST00000565047 PANK2Q9BZ23 570 aa16.19■□□□□ 0.18
CLN3-213ENST00000565047 ZHX3Q9H4I2 956 aa16.19■□□□□ 0.18
CLN3-213ENST00000565047 PIDD1Q9HB75 910 aa16.19■□□□□ 0.18
CLN3-213ENST00000565047 TFIP11Q9UBB9 837 aaKnown RBP16.19■□□□□ 0.18
CLN3-213ENST00000565047 SEL1LQ9UBV2 794 aa16.19■□□□□ 0.18
CLN3-213ENST00000565047 FBXL5Q9UKA1 691 aa16.19■□□□□ 0.18
CLN3-213ENST00000565047 UBQLN1Q9UMX0 589 aaKnown RBP16.19■□□□□ 0.18
CLN3-213ENST00000565047 ZDBF2Q9HCK1 2354 aa16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms