RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 NOP53Q9NZM5 478 aaKnown RBP14.06□□□□□ -0.16
CLN3-210ENST00000563874 PRKAG3Q9UGI9 489 aa14.06□□□□□ -0.16
CLN3-210ENST00000563874 TMX2Q9Y320 296 aa14.06□□□□□ -0.16
CLN3-210ENST00000563874 DYNC1LI1Q9Y6G9 523 aaKnown RBP14.06□□□□□ -0.16
CLN3-210ENST00000563874 CD58P19256 250 aa14.05□□□□□ -0.16
CLN3-210ENST00000563874 DNAJC3Q13217 504 aa14.05□□□□□ -0.16
CLN3-210ENST00000563874 IZUMO3Q5VZ72 239 aa14.05□□□□□ -0.16
CLN3-210ENST00000563874 ARHGEF18Q6ZSZ5 1173 aa14.05□□□□□ -0.16
CLN3-210ENST00000563874 SV2AQ7L0J3 742 aa14.05□□□□□ -0.16
CLN3-210ENST00000563874 GSTA5Q7RTV2 222 aa14.05□□□□□ -0.16
CLN3-210ENST00000563874 ANKS1BQ7Z6G8 1248 aa14.05□□□□□ -0.16
CLN3-210ENST00000563874 GBP7Q8N8V2 638 aaPredicted RBP14.05□□□□□ -0.16
CLN3-210ENST00000563874 ATL2Q8NHH9 583 aa14.05□□□□□ -0.16
CLN3-210ENST00000563874 C7orf43Q8WVR3 580 aa14.05□□□□□ -0.16
CLN3-210ENST00000563874 ZNF570Q96NI8 536 aa14.05□□□□□ -0.16
CLN3-210ENST00000563874 USP20Q9Y2K6 914 aa14.05□□□□□ -0.16
CLN3-210ENST00000563874 LRRC37AA6NMS7 1700 aa14.05□□□□□ -0.16
CLN3-210ENST00000563874 LY75O60449 1722 aa14.05□□□□□ -0.16
CLN3-210ENST00000563874 CFHP08603 1231 aa14.05□□□□□ -0.16
CLN3-210ENST00000563874 TAC1P20366 129 aa14.05□□□□□ -0.16
CLN3-210ENST00000563874 ALDH1B1P30837 517 aa14.05□□□□□ -0.16
CLN3-210ENST00000563874 XKR9Q5GH70 373 aa14.05□□□□□ -0.16
CLN3-210ENST00000563874 MCOLN2Q8IZK6 566 aa14.05□□□□□ -0.16
CLN3-210ENST00000563874 CPXCR1Q8N123 301 aa14.05□□□□□ -0.16
CLN3-210ENST00000563874 SLC17A8Q8NDX2 589 aa14.05□□□□□ -0.16
CLN3-210ENST00000563874 POMGNT1Q8WZA1 660 aa14.05□□□□□ -0.16
CLN3-210ENST00000563874 DDX27Q96GQ7 796 aaKnown RBP14.05□□□□□ -0.16
CLN3-210ENST00000563874 IFT74Q96LB3 600 aa14.05□□□□□ -0.16
CLN3-210ENST00000563874 TMEM8AQ9HCN3 771 aa14.05□□□□□ -0.16
CLN3-210ENST00000563874 DENND3A2RUS2 1198 aa14.04□□□□□ -0.16
CLN3-210ENST00000563874 CDH16O75309 829 aa14.04□□□□□ -0.16
CLN3-210ENST00000563874 ALADP13716 330 aa14.04□□□□□ -0.16
CLN3-210ENST00000563874 WDR4P57081 412 aaKnown RBP14.04□□□□□ -0.16
CLN3-210ENST00000563874 RNASELQ05823 741 aaKnown RBP14.04□□□□□ -0.16
CLN3-210ENST00000563874 ALCAMQ13740 583 aa14.04□□□□□ -0.16
CLN3-210ENST00000563874 CRYMQ14894 314 aa14.04□□□□□ -0.16
CLN3-210ENST00000563874 GLIS1Q8NBF1 620 aa14.04□□□□□ -0.16
CLN3-210ENST00000563874 CHURC1Q8WUH1 139 aa14.04□□□□□ -0.16
CLN3-210ENST00000563874 MAGEB18Q96M61 343 aa14.04□□□□□ -0.16
CLN3-210ENST00000563874 TMEM237Q96Q45 408 aa14.04□□□□□ -0.16
CLN3-210ENST00000563874 SLCO1B3Q9NPD5 702 aa14.04□□□□□ -0.16
CLN3-210ENST00000563874 ADAM22Q9P0K1 906 aa14.04□□□□□ -0.16
CLN3-210ENST00000563874 SERPINA10Q9UK55 444 aa14.04□□□□□ -0.16
CLN3-210ENST00000563874 CCPG1Q9ULG6 757 aa14.04□□□□□ -0.16
CLN3-210ENST00000563874 TBX20Q9UMR3 447 aa14.04□□□□□ -0.16
CLN3-210ENST00000563874 RBBP6Q7Z6E9 1792 aaKnown RBP14.04□□□□□ -0.16
CLN3-210ENST00000563874 POC1B-GALNT4F8VUJ3 575 aa14.04□□□□□ -0.16
CLN3-210ENST00000563874 KIF1CO43896 1103 aaKnown RBP14.04□□□□□ -0.16
CLN3-210ENST00000563874 GPC3P51654 580 aa14.04□□□□□ -0.16
CLN3-210ENST00000563874 TAS2R40P59535 323 aa14.04□□□□□ -0.16
CLN3-210ENST00000563874 TRAF1Q13077 416 aa14.04□□□□□ -0.16
CLN3-210ENST00000563874 AOC3Q16853 763 aa14.04□□□□□ -0.16
CLN3-210ENST00000563874 P3H1Q32P28 736 aa14.04□□□□□ -0.16
CLN3-210ENST00000563874 ZFYVE27Q5T4F4 411 aa14.04□□□□□ -0.16
CLN3-210ENST00000563874 KAZNQ674X7 775 aa14.04□□□□□ -0.16
CLN3-210ENST00000563874 ASRGL1Q7L266 308 aa14.04□□□□□ -0.16
CLN3-210ENST00000563874 GRK7Q8WTQ7 553 aa14.04□□□□□ -0.16
CLN3-210ENST00000563874 RBM15Q96T37 977 aaKnown RBP eCLIP14.04□□□□□ -0.16
CLN3-210ENST00000563874 ASTN2O75129 1339 aaPredicted RBP14.04□□□□□ -0.16
CLN3-210ENST00000563874 PI4K2BG5E9Z4 385 aa14.04□□□□□ -0.16
CLN3-210ENST00000563874 ZSCAN5DPP0CG00 497 aa14.04□□□□□ -0.16
CLN3-210ENST00000563874 EIF2AK2P19525 551 aaKnown RBP14.04□□□□□ -0.16
CLN3-210ENST00000563874 NPTX2P47972 431 aa14.04□□□□□ -0.16
CLN3-210ENST00000563874 MTFR1Q15390 333 aa14.04□□□□□ -0.16
CLN3-210ENST00000563874 CCHCR1Q8TD31 782 aa14.04□□□□□ -0.16
CLN3-210ENST00000563874 C11orf70Q9BRQ4 267 aa14.04□□□□□ -0.16
CLN3-210ENST00000563874 SBDSQ9Y3A5 250 aaKnown RBP eCLIP14.04□□□□□ -0.16
CLN3-210ENST00000563874 SORBS3O60504 671 aa14.03□□□□□ -0.16
CLN3-210ENST00000563874 NEBLO76041 1014 aa14.03□□□□□ -0.16
CLN3-210ENST00000563874 UNGP13051 313 aaPredicted RBP14.03□□□□□ -0.16
CLN3-210ENST00000563874 TARSP26639 723 aaKnown RBP14.03□□□□□ -0.16
CLN3-210ENST00000563874 PDE6BP35913 854 aa14.03□□□□□ -0.16
CLN3-210ENST00000563874 STRN3Q13033 797 aa14.03□□□□□ -0.16
CLN3-210ENST00000563874 FASTKD3Q14CZ7 662 aaKnown RBP14.03□□□□□ -0.16
CLN3-210ENST00000563874 TKFCQ3LXA3 575 aa14.03□□□□□ -0.16
CLN3-210ENST00000563874 ATP13A4Q4VNC1 1196 aa14.03□□□□□ -0.16
CLN3-210ENST00000563874 CC2D2BQ6DHV5 1058 aa14.03□□□□□ -0.16
CLN3-210ENST00000563874 SPOPLQ6IQ16 392 aa14.03□□□□□ -0.16
CLN3-210ENST00000563874 C4orf33Q8N1A6 199 aa14.03□□□□□ -0.16
CLN3-210ENST00000563874 TMEM161BQ8NDZ6 487 aa14.03□□□□□ -0.16
CLN3-210ENST00000563874 ERP27Q96DN0 273 aa14.03□□□□□ -0.16
CLN3-210ENST00000563874 MYLK2Q9H1R3 596 aa14.03□□□□□ -0.16
CLN3-210ENST00000563874 SCN9AQ15858 1988 aa14.03□□□□□ -0.16
CLN3-210ENST00000563874 ADGRA3Q8IWK6 1321 aa14.03□□□□□ -0.16
CLN3-210ENST00000563874 ATP9AO75110 1047 aa14.03□□□□□ -0.16
CLN3-210ENST00000563874 FDX1P10109 184 aa14.03□□□□□ -0.16
CLN3-210ENST00000563874 MAPTP10636 758 aaKnown RBP14.03□□□□□ -0.16
CLN3-210ENST00000563874 KRT10P13645 584 aa14.03□□□□□ -0.16
CLN3-210ENST00000563874 CCND1P24385 295 aa14.03□□□□□ -0.16
CLN3-210ENST00000563874 MRPS9P82933 396 aaKnown RBP14.03□□□□□ -0.16
CLN3-210ENST00000563874 LACTBP83111 547 aaPredicted RBP14.03□□□□□ -0.16
CLN3-210ENST00000563874 SATB1Q01826 763 aa14.03□□□□□ -0.16
CLN3-210ENST00000563874 MTMR1Q13613 665 aa14.03□□□□□ -0.16
CLN3-210ENST00000563874 SLC39A4Q6P5W5 647 aa14.03□□□□□ -0.16
CLN3-210ENST00000563874 VSIG1Q86XK7 387 aa14.03□□□□□ -0.16
CLN3-210ENST00000563874 BSNDQ8WZ55 320 aa14.03□□□□□ -0.16
CLN3-210ENST00000563874 UTP4Q969X6 686 aaKnown RBP14.03□□□□□ -0.16
CLN3-210ENST00000563874 FAM213AQ9BRX8 229 aa14.03□□□□□ -0.16
CLN3-210ENST00000563874 MRIQ9BWK5 157 aa14.03□□□□□ -0.16
CLN3-210ENST00000563874 SLC24A3Q9HC58 644 aa14.03□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms