RNA–Protein interactions for RNA: ENST00000563226.1

SMPD3-203, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 1 (best) BASIC

Gene SMPD3, Length 2,093 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-203ENST00000563226 KRIT1O00522 736 aa20.48■□□□□ 0.87
SMPD3-203ENST00000563226 COMTP21964 271 aa20.48■□□□□ 0.87
SMPD3-203ENST00000563226 SSTR3P32745 418 aaPredicted RBP20.48■□□□□ 0.87
SMPD3-203ENST00000563226 FKBP1BP68106 108 aa20.48■□□□□ 0.87
SMPD3-203ENST00000563226 GABPB1Q06547 395 aaPredicted RBP20.48■□□□□ 0.87
SMPD3-203ENST00000563226 ZNF568Q3ZCX4 644 aa20.48■□□□□ 0.87
SMPD3-203ENST00000563226 SND1Q7KZF4 910 aaKnown RBP eCLIP20.48■□□□□ 0.87
SMPD3-203ENST00000563226 DPP9Q86TI2 863 aa20.48■□□□□ 0.87
SMPD3-203ENST00000563226 MAML3Q96JK9 1138 aa20.48■□□□□ 0.87
SMPD3-203ENST00000563226 CALR3Q96L12 384 aaKnown RBP20.48■□□□□ 0.87
SMPD3-203ENST00000563226 C16orf70Q9BSU1 422 aa20.48■□□□□ 0.87
SMPD3-203ENST00000563226 IFT122Q9HBG6 1241 aa20.48■□□□□ 0.87
SMPD3-203ENST00000563226 NR2E1Q9Y466 385 aa20.48■□□□□ 0.87
SMPD3-203ENST00000563226 FGGP02679 453 aa20.47■□□□□ 0.87
SMPD3-203ENST00000563226 HOXC6P09630 235 aa20.47■□□□□ 0.87
SMPD3-203ENST00000563226 ZNF484Q5JVG2 852 aa20.47■□□□□ 0.87
SMPD3-203ENST00000563226 NAA35Q5VZE5 725 aa20.47■□□□□ 0.87
SMPD3-203ENST00000563226 EFCAB13Q8IY85 973 aa20.47■□□□□ 0.87
SMPD3-203ENST00000563226 TMEM192Q8IY95 271 aa20.47■□□□□ 0.87
SMPD3-203ENST00000563226 LINC01465Q8N7H1 131 aa20.47■□□□□ 0.87
SMPD3-203ENST00000563226 CASKIN2Q8WXE0 1202 aa20.47■□□□□ 0.87
SMPD3-203ENST00000563226 CPA5Q8WXQ8 436 aa20.47■□□□□ 0.87
SMPD3-203ENST00000563226 RNPC3Q96LT9 517 aaKnown RBP20.47■□□□□ 0.87
SMPD3-203ENST00000563226 CARD9Q9H257 536 aa20.47■□□□□ 0.87
SMPD3-203ENST00000563226 CNOT8Q9UFF9 292 aaKnown RBP20.47■□□□□ 0.87
SMPD3-203ENST00000563226 A0A0U1RQG5 324 aaPredicted RBP20.47■□□□□ 0.87
SMPD3-203ENST00000563226 SMPD1P17405 629 aa20.47■□□□□ 0.87
SMPD3-203ENST00000563226 GRM1Q13255 1194 aa20.47■□□□□ 0.87
SMPD3-203ENST00000563226 C2CD6Q53TS8 623 aa20.47■□□□□ 0.87
SMPD3-203ENST00000563226 LLGL2Q6P1M3 1020 aa20.47■□□□□ 0.87
SMPD3-203ENST00000563226 PHLDB2Q86SQ0 1253 aa20.47■□□□□ 0.87
SMPD3-203ENST00000563226 C2orf69Q8N8R5 385 aa20.47■□□□□ 0.87
SMPD3-203ENST00000563226 NPLOC4Q8TAT6 608 aa20.47■□□□□ 0.87
SMPD3-203ENST00000563226 EMID1Q96A84 441 aaPredicted RBP20.47■□□□□ 0.87
SMPD3-203ENST00000563226 PARK7Q99497 189 aaKnown RBP20.47■□□□□ 0.87
SMPD3-203ENST00000563226 CDT1Q9H211 546 aa20.47■□□□□ 0.87
SMPD3-203ENST00000563226 VIPAS39Q9H9C1 493 aa20.47■□□□□ 0.87
SMPD3-203ENST00000563226 TTC7AQ9ULT0 858 aaPredicted RBP20.47■□□□□ 0.87
SMPD3-203ENST00000563226 DOCK3Q8IZD9 2030 aa20.46■□□□□ 0.87
SMPD3-203ENST00000563226 ADCY6O43306 1168 aa20.46■□□□□ 0.87
SMPD3-203ENST00000563226 ASS1P00966 412 aaKnown RBP20.46■□□□□ 0.87
SMPD3-203ENST00000563226 MYL6P60660 151 aa20.46■□□□□ 0.87
SMPD3-203ENST00000563226 TMEM132AQ24JP5 1023 aa20.46■□□□□ 0.87
SMPD3-203ENST00000563226 PASD1Q8IV76 773 aa20.46■□□□□ 0.87
SMPD3-203ENST00000563226 IFT20Q8IY31 132 aa20.46■□□□□ 0.87
SMPD3-203ENST00000563226 TMEM130Q8N3G9 435 aa20.46■□□□□ 0.87
SMPD3-203ENST00000563226 RBBP8NLQ8NC74 664 aaPredicted RBP20.46■□□□□ 0.87
SMPD3-203ENST00000563226 CYFIP2Q96F07 1278 aa20.46■□□□□ 0.87
SMPD3-203ENST00000563226 A0A087WZ62 844 aa20.46■□□□□ 0.87
SMPD3-203ENST00000563226 SART1O43290 800 aaKnown RBP20.46■□□□□ 0.87
SMPD3-203ENST00000563226 VTNP04004 478 aa20.46■□□□□ 0.87
SMPD3-203ENST00000563226 CYP1A1P04798 512 aaPredicted RBP20.46■□□□□ 0.87
SMPD3-203ENST00000563226 TERF2Q15554 542 aa20.46■□□□□ 0.87
SMPD3-203ENST00000563226 ADAT2Q7Z6V5 191 aaKnown RBP20.46■□□□□ 0.87
SMPD3-203ENST00000563226 ZNF677Q86XU0 584 aa20.46■□□□□ 0.87
SMPD3-203ENST00000563226 MCOLN2Q8IZK6 566 aa20.46■□□□□ 0.87
SMPD3-203ENST00000563226 UBR7Q8N806 425 aa20.46■□□□□ 0.87
SMPD3-203ENST00000563226 IFT81Q8WYA0 676 aa20.46■□□□□ 0.87
SMPD3-203ENST00000563226 ZSWIM1Q9BR11 485 aa20.46■□□□□ 0.87
SMPD3-203ENST00000563226 FDXACB1Q9BRP7 624 aaPredicted RBP20.46■□□□□ 0.87
SMPD3-203ENST00000563226 NFU1Q9UMS0 254 aa20.46■□□□□ 0.87
SMPD3-203ENST00000563226 ASAP2O43150 1006 aa20.45■□□□□ 0.86
SMPD3-203ENST00000563226 TBXAS1P24557 533 aaPredicted RBP20.45■□□□□ 0.86
SMPD3-203ENST00000563226 GNA15P30679 374 aa20.45■□□□□ 0.86
SMPD3-203ENST00000563226 EPHB4P54760 987 aa20.45■□□□□ 0.86
SMPD3-203ENST00000563226 GYS2P54840 703 aa20.45■□□□□ 0.86
SMPD3-203ENST00000563226 BPIFB4P59827 614 aa20.45■□□□□ 0.86
SMPD3-203ENST00000563226 TFAMQ00059 246 aaKnown RBP20.45■□□□□ 0.86
SMPD3-203ENST00000563226 FAM110CQ1W6H9 321 aa20.45■□□□□ 0.86
SMPD3-203ENST00000563226 PLEKHH3Q7Z736 793 aa20.45■□□□□ 0.86
SMPD3-203ENST00000563226 CD101Q93033 1021 aa20.45■□□□□ 0.86
SMPD3-203ENST00000563226 RPS6KC1Q96S38 1066 aa20.45■□□□□ 0.86
SMPD3-203ENST00000563226 TRIM7Q9C029 511 aa20.45■□□□□ 0.86
SMPD3-203ENST00000563226 UVRAGQ9P2Y5 699 aa20.45■□□□□ 0.86
SMPD3-203ENST00000563226 CNTN6Q9UQ52 1028 aa20.45■□□□□ 0.86
SMPD3-203ENST00000563226 CCDC188H7C350 402 aa20.44■□□□□ 0.86
SMPD3-203ENST00000563226 GPR25O00155 361 aa20.44■□□□□ 0.86
SMPD3-203ENST00000563226 FAM153BP0C7A2 387 aa20.44■□□□□ 0.86
SMPD3-203ENST00000563226 CXCL8P10145 99 aa20.44■□□□□ 0.86
SMPD3-203ENST00000563226 PEX5P50542 639 aa20.44■□□□□ 0.86
SMPD3-203ENST00000563226 AP3M2P53677 418 aa20.44■□□□□ 0.86
SMPD3-203ENST00000563226 AMHR2Q16671 573 aa20.44■□□□□ 0.86
SMPD3-203ENST00000563226 DUOXA2Q1HG44 320 aa20.44■□□□□ 0.86
SMPD3-203ENST00000563226 FAM153CQ494X1 144 aa20.44■□□□□ 0.86
SMPD3-203ENST00000563226 GLIPR1L2Q4G1C9 344 aa20.44■□□□□ 0.86
SMPD3-203ENST00000563226 CCDC102AQ96A19 550 aa20.44■□□□□ 0.86
SMPD3-203ENST00000563226 TINF2Q9BSI4 451 aa20.44■□□□□ 0.86
SMPD3-203ENST00000563226 NFKBIZQ9BYH8 718 aa20.44■□□□□ 0.86
SMPD3-203ENST00000563226 ERVK-5Q9HDB9 667 aa20.44■□□□□ 0.86
SMPD3-203ENST00000563226 AMACRQ9UHK6 382 aa20.44■□□□□ 0.86
SMPD3-203ENST00000563226 FAM153AQ9UHL3 310 aa20.44■□□□□ 0.86
SMPD3-203ENST00000563226 ZHX1Q9UKY1 873 aaPredicted RBP20.44■□□□□ 0.86
SMPD3-203ENST00000563226 AKT3Q9Y243 479 aa20.44■□□□□ 0.86
SMPD3-203ENST00000563226 TNFSF13BQ9Y275 285 aa20.44■□□□□ 0.86
SMPD3-203ENST00000563226 MIF4GDA9UHW6 222 aaKnown RBP20.44■□□□□ 0.86
SMPD3-203ENST00000563226 MEFVO15553 781 aaPredicted RBP20.44■□□□□ 0.86
SMPD3-203ENST00000563226 RRM1P23921 792 aa20.44■□□□□ 0.86
SMPD3-203ENST00000563226 CENPCQ03188 943 aa20.44■□□□□ 0.86
SMPD3-203ENST00000563226 TSEN2Q8NCE0 465 aaKnown RBP20.44■□□□□ 0.86
SMPD3-203ENST00000563226 IMPG2Q9BZV3 1241 aa20.44■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms