RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 SRGAP2O75044 1071 aa9.84□□□□□ -0.83
VPS39-205ENST00000562258 SRGAP2BP0DMP2 458 aa9.84□□□□□ -0.83
VPS39-205ENST00000562258 MRPS25P82663 173 aaKnown RBP9.84□□□□□ -0.83
VPS39-205ENST00000562258 UHMK1Q8TAS1 419 aaKnown RBP9.84□□□□□ -0.83
VPS39-205ENST00000562258 RIN2Q8WYP3 895 aaPredicted RBP9.84□□□□□ -0.83
VPS39-205ENST00000562258 TRIB2Q92519 343 aa9.84□□□□□ -0.83
VPS39-205ENST00000562258 NIF3L1Q9GZT8 377 aa9.84□□□□□ -0.83
VPS39-205ENST00000562258 CYP4F11Q9HBI6 524 aa9.84□□□□□ -0.83
VPS39-205ENST00000562258 TMEM8AQ9HCN3 771 aa9.84□□□□□ -0.83
VPS39-205ENST00000562258 MTRF1LQ9UGC7 380 aaKnown RBP9.84□□□□□ -0.83
VPS39-205ENST00000562258 CYP3A7-CYP3A51PA0A087WV96 503 aa9.84□□□□□ -0.83
VPS39-205ENST00000562258 ITGBL1O95965 494 aaPredicted RBP9.84□□□□□ -0.83
VPS39-205ENST00000562258 CYP3A7P24462 503 aa9.84□□□□□ -0.83
VPS39-205ENST00000562258 GTF2H1P32780 548 aa9.84□□□□□ -0.83
VPS39-205ENST00000562258 TMEM63BQ5T3F8 832 aa9.84□□□□□ -0.83
VPS39-205ENST00000562258 PLPPR4Q7Z2D5 763 aa9.84□□□□□ -0.83
VPS39-205ENST00000562258 ABRAQ8N0Z2 381 aa9.84□□□□□ -0.83
VPS39-205ENST00000562258 PDCL2Q8N4E4 241 aa9.84□□□□□ -0.83
VPS39-205ENST00000562258 PPP1R14CQ8TAE6 165 aa9.84□□□□□ -0.83
VPS39-205ENST00000562258 DHX38Q92620 1227 aaKnown RBP9.84□□□□□ -0.83
VPS39-205ENST00000562258 TSNARE1Q96NA8 513 aa9.84□□□□□ -0.83
VPS39-205ENST00000562258 PCDHB2Q9Y5E7 798 aa9.84□□□□□ -0.83
VPS39-205ENST00000562258 PCDHA13Q9Y5I0 950 aa9.84□□□□□ -0.83
VPS39-205ENST00000562258 LACTBL1A8MY62 500 aa9.83□□□□□ -0.84
VPS39-205ENST00000562258 HOXA2O43364 376 aa9.83□□□□□ -0.84
VPS39-205ENST00000562258 CKMP06732 381 aa9.83□□□□□ -0.84
VPS39-205ENST00000562258 PDZD4Q76G19 769 aaPredicted RBP9.83□□□□□ -0.84
VPS39-205ENST00000562258 C18orf8Q96DM3 657 aa9.83□□□□□ -0.84
VPS39-205ENST00000562258 MMTAG2Q9BU76 263 aaKnown RBP9.83□□□□□ -0.84
VPS39-205ENST00000562258 IQCGQ9H095 443 aaKnown RBP9.83□□□□□ -0.84
VPS39-205ENST00000562258 FAM107BQ9H098 131 aa9.83□□□□□ -0.84
VPS39-205ENST00000562258 PADI3Q9ULW8 664 aa9.83□□□□□ -0.84
VPS39-205ENST00000562258 MRPL42Q9Y6G3 142 aaKnown RBP9.83□□□□□ -0.84
VPS39-205ENST00000562258 SCAMP3O14828 347 aaKnown RBP9.83□□□□□ -0.84
VPS39-205ENST00000562258 TLL1O43897 1013 aa9.83□□□□□ -0.84
VPS39-205ENST00000562258 MAFO75444 373 aaPredicted RBP9.83□□□□□ -0.84
VPS39-205ENST00000562258 LRG1P02750 347 aa9.83□□□□□ -0.84
VPS39-205ENST00000562258 AMHP03971 560 aa9.83□□□□□ -0.84
VPS39-205ENST00000562258 SLC12A3P55017 1021 aa9.83□□□□□ -0.84
VPS39-205ENST00000562258 APBA1Q02410 837 aa9.83□□□□□ -0.84
VPS39-205ENST00000562258 MTF1Q14872 753 aa9.83□□□□□ -0.84
VPS39-205ENST00000562258 ARL13BQ3SXY8 428 aa9.83□□□□□ -0.84
VPS39-205ENST00000562258 DNAJC21Q5F1R6 531 aaKnown RBP9.83□□□□□ -0.84
VPS39-205ENST00000562258 FBXO47Q5MNV8 452 aa9.83□□□□□ -0.84
VPS39-205ENST00000562258 GPAT2Q6NUI2 795 aa9.83□□□□□ -0.84
VPS39-205ENST00000562258 YAF2Q8IY57 180 aa9.83□□□□□ -0.84
VPS39-205ENST00000562258 MAGOHBQ96A72 148 aaKnown RBP9.83□□□□□ -0.84
VPS39-205ENST00000562258 ZFP42Q96MM3 310 aa9.83□□□□□ -0.84
VPS39-205ENST00000562258 FAM161BQ96MY7 647 aa9.83□□□□□ -0.84
VPS39-205ENST00000562258 DHX35Q9H5Z1 703 aaKnown RBP9.83□□□□□ -0.84
VPS39-205ENST00000562258 SLC28A3Q9HAS3 691 aa9.83□□□□□ -0.84
VPS39-205ENST00000562258 XIRP1Q702N8 1843 aaKnown RBP9.83□□□□□ -0.84
VPS39-205ENST00000562258 MUTP22033 750 aa9.83□□□□□ -0.84
VPS39-205ENST00000562258 KLRC2P26717 231 aa9.83□□□□□ -0.84
VPS39-205ENST00000562258 SOX5P35711 763 aa9.83□□□□□ -0.84
VPS39-205ENST00000562258 ADCY8P40145 1251 aa9.83□□□□□ -0.84
VPS39-205ENST00000562258 FXR1P51114 621 aaKnown RBP eCLIP9.83□□□□□ -0.84
VPS39-205ENST00000562258 TRIP13Q15645 432 aaPredicted RBP9.83□□□□□ -0.84
VPS39-205ENST00000562258 MMS22LQ6ZRQ5 1243 aa9.83□□□□□ -0.84
VPS39-205ENST00000562258 CTAGE3PQ8IX95 158 aa9.83□□□□□ -0.84
VPS39-205ENST00000562258 UBLCP1Q8WVY7 318 aaPredicted RBP9.83□□□□□ -0.84
VPS39-205ENST00000562258 ABHD10Q9NUJ1 306 aa9.83□□□□□ -0.84
VPS39-205ENST00000562258 SLC4A7Q9Y6M7 1214 aa9.83□□□□□ -0.84
VPS39-205ENST00000562258 PKD1L3Q7Z443 1732 aa9.83□□□□□ -0.84
VPS39-205ENST00000562258 ARF4P18085 180 aaPredicted RBP9.82□□□□□ -0.84
VPS39-205ENST00000562258 MCM3P25205 808 aa9.82□□□□□ -0.84
VPS39-205ENST00000562258 ETF1P62495 437 aaKnown RBP9.82□□□□□ -0.84
VPS39-205ENST00000562258 DCP1BQ8IZD4 617 aaKnown RBP9.82□□□□□ -0.84
VPS39-205ENST00000562258 KCTD17Q8N5Z5 321 aa9.82□□□□□ -0.84
VPS39-205ENST00000562258 TRIM11Q96F44 468 aa9.82□□□□□ -0.84
VPS39-205ENST00000562258 ZBED3Q96IU2 234 aaPredicted RBP9.82□□□□□ -0.84
VPS39-205ENST00000562258 CCDC77Q9BR77 488 aa9.82□□□□□ -0.84
VPS39-205ENST00000562258 NXF3Q9H4D5 531 aaKnown RBP9.82□□□□□ -0.84
VPS39-205ENST00000562258 OLFML3Q9NRN5 406 aa9.82□□□□□ -0.84
VPS39-205ENST00000562258 STAP1Q9ULZ2 295 aa9.82□□□□□ -0.84
VPS39-205ENST00000562258 DIS3Q9Y2L1 958 aaKnown RBP9.82□□□□□ -0.84
VPS39-205ENST00000562258 IGLV3-22A0A075B6J6 115 aa9.82□□□□□ -0.84
VPS39-205ENST00000562258 SGK1O00141 431 aa9.82□□□□□ -0.84
VPS39-205ENST00000562258 FOXN3O00409 490 aaPredicted RBP9.82□□□□□ -0.84
VPS39-205ENST00000562258 AP1G2O75843 785 aa9.82□□□□□ -0.84
VPS39-205ENST00000562258 GARTP22102 1010 aa9.82□□□□□ -0.84
VPS39-205ENST00000562258 IQCB1Q15051 598 aa9.82□□□□□ -0.84
VPS39-205ENST00000562258 TMEM119Q4V9L6 283 aa9.82□□□□□ -0.84
VPS39-205ENST00000562258 DCAF6Q58WW2 860 aa9.82□□□□□ -0.84
VPS39-205ENST00000562258 OVOS1Q6IE37 1185 aa9.82□□□□□ -0.84
VPS39-205ENST00000562258 ZNF771Q7L3S4 317 aaPredicted RBP9.82□□□□□ -0.84
VPS39-205ENST00000562258 TATDN2Q93075 761 aa9.82□□□□□ -0.84
VPS39-205ENST00000562258 VAV3Q9UKW4 847 aa9.82□□□□□ -0.84
VPS39-205ENST00000562258 MAD1L1Q9Y6D9 718 aa9.82□□□□□ -0.84
VPS39-205ENST00000562258 NFASCO94856 1347 aa9.82□□□□□ -0.84
VPS39-205ENST00000562258 ATMINO43313 823 aaPredicted RBP9.82□□□□□ -0.84
VPS39-205ENST00000562258 SNAI1O95863 264 aaPredicted RBP9.82□□□□□ -0.84
VPS39-205ENST00000562258 PDGFRAP16234 1089 aa9.82□□□□□ -0.84
VPS39-205ENST00000562258 SAT1P21673 171 aa9.82□□□□□ -0.84
VPS39-205ENST00000562258 WEE1P30291 646 aa9.82□□□□□ -0.84
VPS39-205ENST00000562258 TNFSF9P41273 254 aa9.82□□□□□ -0.84
VPS39-205ENST00000562258 YWHAHQ04917 246 aaPredicted RBP9.82□□□□□ -0.84
VPS39-205ENST00000562258 ZNF211Q13398 564 aaPredicted RBP9.82□□□□□ -0.84
VPS39-205ENST00000562258 RNF219Q5W0B1 726 aaPredicted RBP9.82□□□□□ -0.84
VPS39-205ENST00000562258 ZNF410Q86VK4 478 aa9.82□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 68.8 ms