RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 VPS36Q86VN1 386 aa22.89■■□□□ 1.25
CLN3-209ENST00000561689 FAM228AQ86W67 206 aa22.89■■□□□ 1.25
CLN3-209ENST00000561689 ASB7Q9H672 318 aa22.89■■□□□ 1.25
CLN3-209ENST00000561689 MOXD2PA6NHM9 499 aa22.88■■□□□ 1.25
CLN3-209ENST00000561689 POU5F1Q01860 360 aaKnown RBP22.88■■□□□ 1.25
CLN3-209ENST00000561689 ZNF569Q5MCW4 686 aa22.88■■□□□ 1.25
CLN3-209ENST00000561689 ZNF662Q6ZS27 426 aa22.88■■□□□ 1.25
CLN3-209ENST00000561689 ENOSF1Q7L5Y1 443 aa22.88■■□□□ 1.25
CLN3-209ENST00000561689 DNAAF5Q86Y56 855 aa22.88■■□□□ 1.25
CLN3-209ENST00000561689 GLYCTKQ8IVS8 523 aa22.88■■□□□ 1.25
CLN3-209ENST00000561689 OLIG1Q8TAK6 271 aa22.88■■□□□ 1.25
CLN3-209ENST00000561689 SLC20A1Q8WUM9 679 aa22.88■■□□□ 1.25
CLN3-209ENST00000561689 IMPG2Q9BZV3 1241 aa22.88■■□□□ 1.25
CLN3-209ENST00000561689 XRN2Q9H0D6 950 aaKnown RBP eCLIP22.88■■□□□ 1.25
CLN3-209ENST00000561689 CXCL16Q9H2A7 254 aa22.88■■□□□ 1.25
CLN3-209ENST00000561689 NXF3Q9H4D5 531 aaKnown RBP22.88■■□□□ 1.25
CLN3-209ENST00000561689 NOD1Q9Y239 953 aa22.88■■□□□ 1.25
CLN3-209ENST00000561689 KRT86O43790 486 aa22.87■■□□□ 1.25
CLN3-209ENST00000561689 SGPL1O95470 568 aa22.87■■□□□ 1.25
CLN3-209ENST00000561689 ASS1P00966 412 aaKnown RBP22.87■■□□□ 1.25
CLN3-209ENST00000561689 KRT5P13647 590 aa22.87■■□□□ 1.25
CLN3-209ENST00000561689 SLC47A2Q86VL8 602 aa22.87■■□□□ 1.25
CLN3-209ENST00000561689 LNX1Q8TBB1 728 aaPredicted RBP22.87■■□□□ 1.25
CLN3-209ENST00000561689 SYT11Q9BT88 431 aa22.87■■□□□ 1.25
CLN3-209ENST00000561689 SENP6Q9GZR1 1112 aaPredicted RBP22.87■■□□□ 1.25
CLN3-209ENST00000561689 UNC93B1Q9H1C4 597 aa22.87■■□□□ 1.25
CLN3-209ENST00000561689 NAGPAQ9UK23 515 aa22.87■■□□□ 1.25
CLN3-209ENST00000561689 PAXBP1Q9Y5B6 917 aa22.87■■□□□ 1.25
CLN3-209ENST00000561689 KRT19P08727 400 aa22.87■■□□□ 1.25
CLN3-209ENST00000561689 ANXA13P27216 316 aa22.87■■□□□ 1.25
CLN3-209ENST00000561689 CUL2Q13617 745 aa22.87■■□□□ 1.25
CLN3-209ENST00000561689 BMS1Q14692 1282 aaKnown RBP22.87■■□□□ 1.25
CLN3-209ENST00000561689 C1orf127Q8N9H9 656 aa22.87■■□□□ 1.25
CLN3-209ENST00000561689 FAM81BQ96LP2 452 aa22.87■■□□□ 1.25
CLN3-209ENST00000561689 TSEN34Q9BSV6 310 aaKnown RBP22.87■■□□□ 1.25
CLN3-209ENST00000561689 APOL6Q9BWW8 343 aa22.87■■□□□ 1.25
CLN3-209ENST00000561689 PACSIN1Q9BY11 444 aa22.87■■□□□ 1.25
CLN3-209ENST00000561689 PTPN22Q9Y2R2 807 aa22.87■■□□□ 1.25
CLN3-209ENST00000561689 A0A1W2PQ45 241 aaPredicted RBP22.86■■□□□ 1.25
CLN3-209ENST00000561689 A0A1W2PQY0 241 aa22.86■■□□□ 1.25
CLN3-209ENST00000561689 MACROD2A1Z1Q3 448 aa22.86■■□□□ 1.25
CLN3-209ENST00000561689 TMEM132DQ14C87 1099 aa22.86■■□□□ 1.25
CLN3-209ENST00000561689 SGSM1Q2NKQ1 1148 aa22.86■■□□□ 1.25
CLN3-209ENST00000561689 UBXN11Q5T124 520 aa22.86■■□□□ 1.25
CLN3-209ENST00000561689 ALKBH5Q6P6C2 394 aaKnown RBP22.86■■□□□ 1.25
CLN3-209ENST00000561689 RPAINQ86UA6 219 aa22.86■■□□□ 1.25
CLN3-209ENST00000561689 SLC30A5Q8TAD4 765 aa22.86■■□□□ 1.25
CLN3-209ENST00000561689 SEPT11Q9NVA2 429 aaKnown RBP22.86■■□□□ 1.25
CLN3-209ENST00000561689 SIX4Q9UIU6 781 aa22.86■■□□□ 1.25
CLN3-209ENST00000561689 FAM170AA1A519 330 aa22.85■■□□□ 1.25
CLN3-209ENST00000561689 RPS6KA5O75582 802 aa22.85■■□□□ 1.25
CLN3-209ENST00000561689 AKAP5P24588 427 aa22.85■■□□□ 1.25
CLN3-209ENST00000561689 MGAT3Q09327 533 aa22.85■■□□□ 1.25
CLN3-209ENST00000561689 NFX1Q12986 1120 aaKnown RBP22.85■■□□□ 1.25
CLN3-209ENST00000561689 NOP9Q86U38 636 aaKnown RBP22.85■■□□□ 1.25
CLN3-209ENST00000561689 ARRDC4Q8NCT1 418 aa22.85■■□□□ 1.25
CLN3-209ENST00000561689 U2AF1L4Q8WU68 220 aaKnown RBP22.85■■□□□ 1.25
CLN3-209ENST00000561689 AGPAT1Q99943 283 aa22.85■■□□□ 1.25
CLN3-209ENST00000561689 TSGA10Q9BZW7 698 aa22.85■■□□□ 1.25
CLN3-209ENST00000561689 ST3GAL5Q9UNP4 418 aa22.85■■□□□ 1.25
CLN3-209ENST00000561689 CALCAP01258 141 aa22.85■■□□□ 1.25
CLN3-209ENST00000561689 HSPA6P17066 643 aa22.85■■□□□ 1.25
CLN3-209ENST00000561689 TNFAIP3P21580 790 aa22.85■■□□□ 1.25
CLN3-209ENST00000561689 CASQ1P31415 396 aa22.85■■□□□ 1.25
CLN3-209ENST00000561689 GUCY2FP51841 1108 aa22.85■■□□□ 1.25
CLN3-209ENST00000561689 NAB2Q15742 525 aa22.85■■□□□ 1.25
CLN3-209ENST00000561689 TAF3Q5VWG9 929 aa22.85■■□□□ 1.25
CLN3-209ENST00000561689 EPS8L1Q8TE68 723 aa22.85■■□□□ 1.25
CLN3-209ENST00000561689 KIF12Q96FN5 646 aa22.85■■□□□ 1.25
CLN3-209ENST00000561689 OSBPL7Q9BZF2 842 aa22.85■■□□□ 1.25
CLN3-209ENST00000561689 XYLT2Q9H1B5 865 aa22.85■■□□□ 1.25
CLN3-209ENST00000561689 LUC7LQ9NQ29 371 aaKnown RBP22.85■■□□□ 1.25
CLN3-209ENST00000561689 UQCRHLA0A096LP55 91 aa22.84■■□□□ 1.25
CLN3-209ENST00000561689 ITGB3P05106 788 aa22.84■■□□□ 1.25
CLN3-209ENST00000561689 UQCRHP07919 91 aa22.84■■□□□ 1.25
CLN3-209ENST00000561689 ACO1P21399 889 aaKnown RBP22.84■■□□□ 1.25
CLN3-209ENST00000561689 YARSP54577 528 aaKnown RBP22.84■■□□□ 1.25
CLN3-209ENST00000561689 PTK7Q13308 1070 aa22.84■■□□□ 1.25
CLN3-209ENST00000561689 ZNF699Q32M78 642 aa22.84■■□□□ 1.25
CLN3-209ENST00000561689 TWF2Q6IBS0 349 aaKnown RBP22.84■■□□□ 1.25
CLN3-209ENST00000561689 PALB2Q86YC2 1186 aa22.84■■□□□ 1.25
CLN3-209ENST00000561689 RPUSD2Q8IZ73 545 aaKnown RBP22.84■■□□□ 1.25
CLN3-209ENST00000561689 SLC35F6Q8N357 371 aa22.84■■□□□ 1.25
CLN3-209ENST00000561689 TRPV6Q9H1D0 765 aa22.84■■□□□ 1.25
CLN3-209ENST00000561689 STARD7Q9NQZ5 370 aa22.84■■□□□ 1.25
CLN3-209ENST00000561689 RNF19AQ9NV58 838 aa22.84■■□□□ 1.25
CLN3-209ENST00000561689 WBP1LQ9NX94 342 aa22.84■■□□□ 1.25
CLN3-209ENST00000561689 NOCTQ9UK39 431 aaKnown RBP22.84■■□□□ 1.25
CLN3-209ENST00000561689 NENFQ9UMX5 172 aa22.84■■□□□ 1.25
CLN3-209ENST00000561689 TMCO5BA8MYB1 307 aa22.83■■□□□ 1.25
CLN3-209ENST00000561689 RECQL4O94761 1208 aa22.83■■□□□ 1.25
CLN3-209ENST00000561689 RPLP2P05387 115 aaKnown RBP22.83■■□□□ 1.25
CLN3-209ENST00000561689 CYP11B1P15538 503 aa22.83■■□□□ 1.25
CLN3-209ENST00000561689 TBXAS1P24557 533 aaPredicted RBP22.83■■□□□ 1.25
CLN3-209ENST00000561689 PTPN11Q06124 597 aaPredicted RBP22.83■■□□□ 1.25
CLN3-209ENST00000561689 SNX27Q96L92 541 aa22.83■■□□□ 1.25
CLN3-209ENST00000561689 ZMAT2Q96NC0 199 aaKnown RBP22.83■■□□□ 1.25
CLN3-209ENST00000561689 RNF39Q9H2S5 420 aa22.83■■□□□ 1.25
CLN3-209ENST00000561689 AGO3Q9H9G7 860 aaKnown RBP22.83■■□□□ 1.25
CLN3-209ENST00000561689 PLEKHA5Q9HAU0 1116 aa22.83■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms