RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 CXXC5Q7LFL8 322 aaKnown RBP2.05□□□□□ -2.08
USP3-209ENST00000558925 HEATR3Q7Z4Q2 680 aa2.05□□□□□ -2.08
USP3-209ENST00000558925 MRGPRGQ86SM5 289 aa2.05□□□□□ -2.08
USP3-209ENST00000558925 CLEC14AQ86T13 490 aa2.05□□□□□ -2.08
USP3-209ENST00000558925 DAAM2Q86T65 1068 aa2.05□□□□□ -2.08
USP3-209ENST00000558925 PPP1R3BQ86XI6 285 aa2.05□□□□□ -2.08
USP3-209ENST00000558925 FAM186BQ8IYM0 893 aa2.05□□□□□ -2.08
USP3-209ENST00000558925 TRMT2AQ8IZ69 625 aaKnown RBP2.05□□□□□ -2.08
USP3-209ENST00000558925 UNC5BQ8IZJ1 945 aa2.05□□□□□ -2.08
USP3-209ENST00000558925 PQLC1Q8N2U9 271 aa2.05□□□□□ -2.08
USP3-209ENST00000558925 OR14K1Q8NGZ2 314 aa2.05□□□□□ -2.08
USP3-209ENST00000558925 IFI44Q8TCB0 444 aa2.05□□□□□ -2.08
USP3-209ENST00000558925 FBXO41Q8TF61 875 aa2.05□□□□□ -2.08
USP3-209ENST00000558925 SNX33Q8WV41 574 aa2.05□□□□□ -2.08
USP3-209ENST00000558925 EDAQ92838 391 aa2.05□□□□□ -2.08
USP3-209ENST00000558925 KIAA1191Q96A73 305 aa2.05□□□□□ -2.08
USP3-209ENST00000558925 SLC35A4Q96G79 324 aa2.05□□□□□ -2.08
USP3-209ENST00000558925 SGCZQ96LD1 299 aa2.05□□□□□ -2.08
USP3-209ENST00000558925 RIPOR3Q96MK2 946 aa2.05□□□□□ -2.08
USP3-209ENST00000558925 UIMC1Q96RL1 719 aa2.05□□□□□ -2.08
USP3-209ENST00000558925 MYD88Q99836 296 aa2.05□□□□□ -2.08
USP3-209ENST00000558925 C1orf43Q9BWL3 253 aa2.05□□□□□ -2.08
USP3-209ENST00000558925 MMRN2Q9H8L6 949 aa2.05□□□□□ -2.08
USP3-209ENST00000558925 NLRC4Q9NPP4 1024 aa2.05□□□□□ -2.08
USP3-209ENST00000558925 PLCB1Q9NQ66 1216 aa2.05□□□□□ -2.08
USP3-209ENST00000558925 KMT5AQ9NQR1 393 aa2.05□□□□□ -2.08
USP3-209ENST00000558925 GJB4Q9NTQ9 266 aa2.05□□□□□ -2.08
USP3-209ENST00000558925 LMBRD1Q9NUN5 540 aa2.05□□□□□ -2.08
USP3-209ENST00000558925 TDP1Q9NUW8 608 aa2.05□□□□□ -2.08
USP3-209ENST00000558925 NIPSNAP3AQ9UFN0 247 aaPredicted RBP2.05□□□□□ -2.08
USP3-209ENST00000558925 ABCF2Q9UG63 623 aa2.05□□□□□ -2.08
USP3-209ENST00000558925 TRPS1Q9UHF7 1281 aa2.05□□□□□ -2.08
USP3-209ENST00000558925 CDC23Q9UJX2 597 aa2.05□□□□□ -2.08
USP3-209ENST00000558925 AJAP1Q9UKB5 411 aaPredicted RBP2.05□□□□□ -2.08
USP3-209ENST00000558925 FAM184BQ9ULE4 1060 aa2.05□□□□□ -2.08
USP3-209ENST00000558925 PCDHA1Q9Y5I3 950 aa2.05□□□□□ -2.08
USP3-209ENST00000558925 RBM8AQ9Y5S9 174 aaKnown RBP2.05□□□□□ -2.08
USP3-209ENST00000558925 ACTL7AQ9Y615 435 aa2.05□□□□□ -2.08
USP3-209ENST00000558925 CFAP20Q9Y6A4 193 aaKnown RBP2.05□□□□□ -2.08
USP3-209ENST00000558925 MYBBP1AQ9BQG0 1328 aaKnown RBP2.05□□□□□ -2.08
USP3-209ENST00000558925 A0A088AWK7 358 aa2.04□□□□□ -2.08
USP3-209ENST00000558925 ABHD14A-ACY1A0A1B0GW23 586 aa2.04□□□□□ -2.08
USP3-209ENST00000558925 NT5C1B-RDH14C9J2C7 533 aa2.04□□□□□ -2.08
USP3-209ENST00000558925 RASA4BC9J798 803 aa2.04□□□□□ -2.08
USP3-209ENST00000558925 RASA4O43374 803 aa2.04□□□□□ -2.08
USP3-209ENST00000558925 SGTAO43765 313 aa2.04□□□□□ -2.08
USP3-209ENST00000558925 GPR32O75388 356 aa2.04□□□□□ -2.08
USP3-209ENST00000558925 ITGA10O75578 1167 aa2.04□□□□□ -2.08
USP3-209ENST00000558925 TCEA3O75764 348 aa2.04□□□□□ -2.08
USP3-209ENST00000558925 TOX4O94842 621 aa2.04□□□□□ -2.08
USP3-209ENST00000558925 ENDOD1O94919 500 aa2.04□□□□□ -2.08
USP3-209ENST00000558925 FSBPO95073 299 aa2.04□□□□□ -2.08
USP3-209ENST00000558925 FOSP01100 380 aaPredicted RBP2.04□□□□□ -2.08
USP3-209ENST00000558925 AHSGP02765 367 aa2.04□□□□□ -2.08
USP3-209ENST00000558925 MYF5P13349 255 aa2.04□□□□□ -2.08
USP3-209ENST00000558925 TYRP14679 529 aa2.04□□□□□ -2.08
USP3-209ENST00000558925 ZKSCAN1P17029 563 aaPredicted RBP2.04□□□□□ -2.08
USP3-209ENST00000558925 HDCP19113 662 aa2.04□□□□□ -2.08
USP3-209ENST00000558925 DDCP20711 480 aa2.04□□□□□ -2.08
USP3-209ENST00000558925 MALP21145 153 aa2.04□□□□□ -2.08
USP3-209ENST00000558925 ABCB4P21439 1286 aa2.04□□□□□ -2.08
USP3-209ENST00000558925 TNFSF4P23510 183 aa2.04□□□□□ -2.08
USP3-209ENST00000558925 POLD1P28340 1107 aa2.04□□□□□ -2.08
USP3-209ENST00000558925 CSF2RBP32927 897 aa2.04□□□□□ -2.08
USP3-209ENST00000558925 GUCY1A2P33402 732 aa2.04□□□□□ -2.08
USP3-209ENST00000558925 IL6STP40189 918 aaPredicted RBP2.04□□□□□ -2.08
USP3-209ENST00000558925 CASRP41180 1078 aa2.04□□□□□ -2.08
USP3-209ENST00000558925 PHKA1P46020 1223 aa2.04□□□□□ -2.08
USP3-209ENST00000558925 ALDH1A3P47895 512 aa2.04□□□□□ -2.08
USP3-209ENST00000558925 MRE11P49959 708 aa2.04□□□□□ -2.08
USP3-209ENST00000558925 CASP5P51878 434 aa2.04□□□□□ -2.08
USP3-209ENST00000558925 CACNB3P54284 484 aa2.04□□□□□ -2.08
USP3-209ENST00000558925 PER3P56645 1201 aa2.04□□□□□ -2.08
USP3-209ENST00000558925 ADAM8P78325 824 aa2.04□□□□□ -2.08
USP3-209ENST00000558925 ATP8B2P98198 1209 aa2.04□□□□□ -2.08
USP3-209ENST00000558925 EXOSC9Q06265 439 aaKnown RBP2.04□□□□□ -2.08
USP3-209ENST00000558925 CHAF1AQ13111 956 aaPredicted RBP2.04□□□□□ -2.08
USP3-209ENST00000558925 MTM1Q13496 603 aa2.04□□□□□ -2.08
USP3-209ENST00000558925 ZMYM3Q14202 1370 aa2.04□□□□□ -2.08
USP3-209ENST00000558925 POLD3Q15054 466 aaPredicted RBP2.04□□□□□ -2.08
USP3-209ENST00000558925 FLYWCH1Q4VC44 716 aa2.04□□□□□ -2.08
USP3-209ENST00000558925 PRAMEF14Q5SWL7 426 aa2.04□□□□□ -2.08
USP3-209ENST00000558925 LCE1AQ5T7P2 110 aa2.04□□□□□ -2.08
USP3-209ENST00000558925 ANO1Q5XXA6 986 aa2.04□□□□□ -2.08
USP3-209ENST00000558925 TRIM68Q6AZZ1 485 aa2.04□□□□□ -2.08
USP3-209ENST00000558925 GADL1Q6ZQY3 521 aa2.04□□□□□ -2.08
USP3-209ENST00000558925 TAS1R1Q7RTX1 841 aa2.04□□□□□ -2.08
USP3-209ENST00000558925 TTC7BQ86TV6 843 aa2.04□□□□□ -2.08
USP3-209ENST00000558925 RSPH3Q86UC2 560 aa2.04□□□□□ -2.08
USP3-209ENST00000558925 RTKN2Q8IZC4 609 aa2.04□□□□□ -2.08
USP3-209ENST00000558925 FUKQ8N0W3 1084 aa2.04□□□□□ -2.08
USP3-209ENST00000558925 RPTORQ8N122 1335 aa2.04□□□□□ -2.08
USP3-209ENST00000558925 KRT78Q8N1N4 520 aa2.04□□□□□ -2.08
USP3-209ENST00000558925 OR2C3Q8N628 320 aa2.04□□□□□ -2.08
USP3-209ENST00000558925 C3orf20Q8ND61 904 aa2.04□□□□□ -2.08
USP3-209ENST00000558925 OR7D4Q8NG98 312 aa2.04□□□□□ -2.08
USP3-209ENST00000558925 IL31RAQ8NI17 732 aa2.04□□□□□ -2.08
USP3-209ENST00000558925 MDM1Q8TC05 714 aa2.04□□□□□ -2.08
USP3-209ENST00000558925 ZNF480Q8WV37 535 aa2.04□□□□□ -2.08
USP3-209ENST00000558925 POF1BQ8WVV4 589 aa2.04□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms