RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 SNX1Q13596 522 aa11.36□□□□□ -0.59
CUX1-217ENST00000558836 CELF3Q5SZQ8 465 aaKnown RBP11.36□□□□□ -0.59
CUX1-217ENST00000558836 ALS2CLQ60I27 953 aa11.36□□□□□ -0.59
CUX1-217ENST00000558836 TMEM192Q8IY95 271 aa11.36□□□□□ -0.59
CUX1-217ENST00000558836 SH3GL2Q99962 352 aa11.36□□□□□ -0.59
CUX1-217ENST00000558836 MINDY3Q9H8M7 445 aa11.36□□□□□ -0.59
CUX1-217ENST00000558836 ADGRA2Q96PE1 1338 aa11.36□□□□□ -0.59
CUX1-217ENST00000558836 WEE2P0C1S8 567 aa11.36□□□□□ -0.59
CUX1-217ENST00000558836 TGFB3P10600 412 aa11.36□□□□□ -0.59
CUX1-217ENST00000558836 ACO1P21399 889 aaKnown RBP11.36□□□□□ -0.59
CUX1-217ENST00000558836 GNA15P30679 374 aa11.36□□□□□ -0.59
CUX1-217ENST00000558836 EPHX2P34913 555 aa11.36□□□□□ -0.59
CUX1-217ENST00000558836 ACTN2P35609 894 aa11.36□□□□□ -0.59
CUX1-217ENST00000558836 MYL6P60660 151 aa11.36□□□□□ -0.59
CUX1-217ENST00000558836 CLDN10P78369 228 aa11.36□□□□□ -0.59
CUX1-217ENST00000558836 PLCB4Q15147 1175 aa11.36□□□□□ -0.59
CUX1-217ENST00000558836 SLFN12LQ6IEE8 588 aa11.36□□□□□ -0.59
CUX1-217ENST00000558836 MCOLN2Q8IZK6 566 aa11.36□□□□□ -0.59
CUX1-217ENST00000558836 WHAMMQ8TF30 809 aa11.36□□□□□ -0.59
CUX1-217ENST00000558836 SLITRK6Q9H5Y7 841 aa11.36□□□□□ -0.59
CUX1-217ENST00000558836 KIAA1586Q9HCI6 787 aa11.36□□□□□ -0.59
CUX1-217ENST00000558836 USTQ9Y2C2 406 aa11.36□□□□□ -0.59
CUX1-217ENST00000558836 ATP8A1Q9Y2Q0 1164 aa11.36□□□□□ -0.59
CUX1-217ENST00000558836 PCDHB2Q9Y5E7 798 aa11.36□□□□□ -0.59
CUX1-217ENST00000558836 GOLGA6L10A0A0M3HER8 536 aa11.35□□□□□ -0.59
CUX1-217ENST00000558836 THAP12O43422 761 aa11.35□□□□□ -0.59
CUX1-217ENST00000558836 OPA1O60313 960 aa11.35□□□□□ -0.59
CUX1-217ENST00000558836 IQCF3P0C7M6 154 aa11.35□□□□□ -0.59
CUX1-217ENST00000558836 CTNNA1P35221 906 aaKnown RBP11.35□□□□□ -0.59
CUX1-217ENST00000558836 RFC5P40937 340 aa11.35□□□□□ -0.59
CUX1-217ENST00000558836 SSR1P43307 286 aaKnown RBP11.35□□□□□ -0.59
CUX1-217ENST00000558836 NSFP46459 744 aaKnown RBP11.35□□□□□ -0.59
CUX1-217ENST00000558836 DHX9Q08211 1270 aaKnown RBP11.35□□□□□ -0.59
CUX1-217ENST00000558836 ATP8B4Q8TF62 1192 aa11.35□□□□□ -0.59
CUX1-217ENST00000558836 C1orf54Q8WWF1 131 aa11.35□□□□□ -0.59
CUX1-217ENST00000558836 CD101Q93033 1021 aa11.35□□□□□ -0.59
CUX1-217ENST00000558836 PSD3Q9NYI0 1048 aa11.35□□□□□ -0.59
CUX1-217ENST00000558836 MROH7Q68CQ1 1323 aa11.35□□□□□ -0.59
CUX1-217ENST00000558836 DICER1Q9UPY3 1922 aaKnown RBP11.35□□□□□ -0.59
CUX1-217ENST00000558836 PRKCBP05771 671 aa11.35□□□□□ -0.59
CUX1-217ENST00000558836 HADHBP55084 474 aaKnown RBP11.35□□□□□ -0.59
CUX1-217ENST00000558836 MCCD1P59942 119 aaPredicted RBP11.35□□□□□ -0.59
CUX1-217ENST00000558836 ORC1Q13415 861 aa11.35□□□□□ -0.59
CUX1-217ENST00000558836 CUL1Q13616 776 aa11.35□□□□□ -0.59
CUX1-217ENST00000558836 UBAP2Q5T6F2 1119 aaKnown RBP11.35□□□□□ -0.59
CUX1-217ENST00000558836 SEL1L2Q5TEA6 688 aa11.35□□□□□ -0.59
CUX1-217ENST00000558836 GPAT2Q6NUI2 795 aa11.35□□□□□ -0.59
CUX1-217ENST00000558836 CCDC137Q6PK04 289 aaKnown RBP11.35□□□□□ -0.59
CUX1-217ENST00000558836 LEKR1Q6ZMV7 388 aa11.35□□□□□ -0.59
CUX1-217ENST00000558836 MMS22LQ6ZRQ5 1243 aa11.35□□□□□ -0.59
CUX1-217ENST00000558836 JAMLQ86YT9 394 aa11.35□□□□□ -0.59
CUX1-217ENST00000558836 PLCD3Q8N3E9 789 aa11.35□□□□□ -0.59
CUX1-217ENST00000558836 RBBP8NLQ8NC74 664 aaPredicted RBP11.35□□□□□ -0.59
CUX1-217ENST00000558836 HERPUD2Q9BSE4 406 aa11.35□□□□□ -0.59
CUX1-217ENST00000558836 HEMGNQ9BXL5 484 aa11.35□□□□□ -0.59
CUX1-217ENST00000558836 KLHL11Q9NVR0 708 aa11.35□□□□□ -0.59
CUX1-217ENST00000558836 TTC7AQ9ULT0 858 aaPredicted RBP11.35□□□□□ -0.59
CUX1-217ENST00000558836 MIF4GDA9UHW6 222 aaKnown RBP11.34□□□□□ -0.59
CUX1-217ENST00000558836 CXCL11O14625 94 aa11.34□□□□□ -0.59
CUX1-217ENST00000558836 CLTAP09496 248 aa11.34□□□□□ -0.59
CUX1-217ENST00000558836 RARAP10276 462 aa11.34□□□□□ -0.59
CUX1-217ENST00000558836 HPDP32754 393 aaPredicted RBP11.34□□□□□ -0.59
CUX1-217ENST00000558836 MAPK6Q16659 721 aa11.34□□□□□ -0.59
CUX1-217ENST00000558836 EEF1DP3Q658K8 133 aa11.34□□□□□ -0.59
CUX1-217ENST00000558836 EFCAB12Q6NXP0 572 aa11.34□□□□□ -0.59
CUX1-217ENST00000558836 LRRC31Q6UY01 552 aa11.34□□□□□ -0.59
CUX1-217ENST00000558836 UHMK1Q8TAS1 419 aaKnown RBP11.34□□□□□ -0.59
CUX1-217ENST00000558836 ATG4AQ8WYN0 398 aa11.34□□□□□ -0.59
CUX1-217ENST00000558836 CGRRF1Q99675 332 aa11.34□□□□□ -0.59
CUX1-217ENST00000558836 ACO2Q99798 780 aaKnown RBP11.34□□□□□ -0.59
CUX1-217ENST00000558836 ANKRD65E5RJM6 399 aa11.34□□□□□ -0.59
CUX1-217ENST00000558836 FAM189A1O60320 539 aa11.34□□□□□ -0.59
CUX1-217ENST00000558836 TOM1L1O75674 476 aa11.34□□□□□ -0.59
CUX1-217ENST00000558836 HSPA9P38646 679 aaKnown RBP11.34□□□□□ -0.59
CUX1-217ENST00000558836 PPFIA1Q13136 1202 aa11.34□□□□□ -0.59
CUX1-217ENST00000558836 DPY19L2Q6NUT2 758 aa11.34□□□□□ -0.59
CUX1-217ENST00000558836 CCDC105Q8IYK2 499 aa11.34□□□□□ -0.59
CUX1-217ENST00000558836 FBXO25Q8TCJ0 367 aa11.34□□□□□ -0.59
CUX1-217ENST00000558836 RPS6KC1Q96S38 1066 aa11.34□□□□□ -0.59
CUX1-217ENST00000558836 ERP44Q9BS26 406 aa11.34□□□□□ -0.59
CUX1-217ENST00000558836 MRPL4Q9BYD3 311 aaKnown RBP11.34□□□□□ -0.59
CUX1-217ENST00000558836 ADAM22Q9P0K1 906 aa11.34□□□□□ -0.59
CUX1-217ENST00000558836 NXF1Q9UBU9 619 aaKnown RBP11.34□□□□□ -0.59
CUX1-217ENST00000558836 CLEC11AQ9Y240 323 aa11.34□□□□□ -0.59
CUX1-217ENST00000558836 PCDHA3Q9Y5H8 950 aa11.34□□□□□ -0.59
CUX1-217ENST00000558836 GOLGA8KD6RF30 607 aa11.34□□□□□ -0.59
CUX1-217ENST00000558836 MYO1FO00160 1098 aa11.34□□□□□ -0.59
CUX1-217ENST00000558836 ZEB2O60315 1214 aa11.34□□□□□ -0.59
CUX1-217ENST00000558836 ZC3H11AO75152 810 aaKnown RBP eCLIP11.34□□□□□ -0.591e-7■■■□□ 17.7
CUX1-217ENST00000558836 SLC25A27O95847 323 aa11.34□□□□□ -0.59
CUX1-217ENST00000558836 LDHAP00338 332 aaKnown RBP11.34□□□□□ -0.59
CUX1-217ENST00000558836 PIGRP01833 764 aa11.34□□□□□ -0.59
CUX1-217ENST00000558836 KRT19P08727 400 aa11.34□□□□□ -0.59
CUX1-217ENST00000558836 ZNF286BP0CG31 522 aa11.34□□□□□ -0.59
CUX1-217ENST00000558836 TRIP13Q15645 432 aaPredicted RBP11.34□□□□□ -0.59
CUX1-217ENST00000558836 IER5Q5VY09 327 aa11.34□□□□□ -0.59
CUX1-217ENST00000558836 ENOSF1Q7L5Y1 443 aa11.34□□□□□ -0.59
CUX1-217ENST00000558836 SLC13A5Q86YT5 568 aaPredicted RBP11.34□□□□□ -0.59
CUX1-217ENST00000558836 NAP1L3Q99457 506 aaPredicted RBP11.34□□□□□ -0.59
CUX1-217ENST00000558836 WNT8AQ9H1J5 351 aa11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms