RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 RGS9BPQ6ZS82 235 aa11.59□□□□□ -0.55
USP3-206ENST00000558157 IRF2BP2Q7Z5L9 587 aa11.59□□□□□ -0.55
USP3-206ENST00000558157 MYLK4Q86YV6 388 aaPredicted RBP11.59□□□□□ -0.55
USP3-206ENST00000558157 REXO1Q8N1G1 1221 aaKnown RBP11.59□□□□□ -0.55
USP3-206ENST00000558157 SCG3Q8WXD2 468 aaKnown RBP11.59□□□□□ -0.55
USP3-206ENST00000558157 ERP27Q96DN0 273 aa11.59□□□□□ -0.55
USP3-206ENST00000558157 OTUD5Q96G74 571 aa11.59□□□□□ -0.55
USP3-206ENST00000558157 PPP1R12CQ9BZL4 782 aa11.59□□□□□ -0.55
USP3-206ENST00000558157 TMEM60Q9H2L4 133 aa11.59□□□□□ -0.55
USP3-206ENST00000558157 NKIRAS1Q9NYS0 192 aa11.59□□□□□ -0.55
USP3-206ENST00000558157 SMCHD1A6NHR9 2005 aa11.59□□□□□ -0.55
USP3-206ENST00000558157 PHF2O75151 1096 aa11.58□□□□□ -0.56
USP3-206ENST00000558157 GGPS1O95749 300 aa11.58□□□□□ -0.56
USP3-206ENST00000558157 PABPC4Q13310 644 aaKnown RBP eCLIP11.58□□□□□ -0.569e-6■■■■□ 24.7
USP3-206ENST00000558157 GIT2Q14161 759 aa11.58□□□□□ -0.56
USP3-206ENST00000558157 MAP7Q14244 749 aa11.58□□□□□ -0.56
USP3-206ENST00000558157 LRRC14Q15048 493 aa11.58□□□□□ -0.56
USP3-206ENST00000558157 ZCWPW2Q504Y3 356 aa11.58□□□□□ -0.56
USP3-206ENST00000558157 LRRC74BQ6ZQY2 392 aa11.58□□□□□ -0.56
USP3-206ENST00000558157 C4orf50Q6ZRC1 276 aa11.58□□□□□ -0.56
USP3-206ENST00000558157 KRT25Q7Z3Z0 450 aa11.58□□□□□ -0.56
USP3-206ENST00000558157 TRIM59Q8IWR1 403 aa11.58□□□□□ -0.56
USP3-206ENST00000558157 TRIM42Q8IWZ5 723 aa11.58□□□□□ -0.56
USP3-206ENST00000558157 PROCA1Q8NCQ7 364 aaPredicted RBP11.58□□□□□ -0.56
USP3-206ENST00000558157 IRGQQ8WZA9 623 aa11.58□□□□□ -0.56
USP3-206ENST00000558157 PREBQ9HCU5 417 aa11.58□□□□□ -0.56
USP3-206ENST00000558157 TMOD4Q9NZQ9 345 aa11.58□□□□□ -0.56
USP3-206ENST00000558157 DBR1Q9UK59 544 aaKnown RBP11.58□□□□□ -0.56
USP3-206ENST00000558157 UTP18Q9Y5J1 556 aaKnown RBP eCLIP11.58□□□□□ -0.56
USP3-206ENST00000558157 COL11A1P12107 1806 aaPredicted RBP11.58□□□□□ -0.56
USP3-206ENST00000558157 SMAPO00193 183 aa11.58□□□□□ -0.56
USP3-206ENST00000558157 MAP3K7O43318 606 aa11.58□□□□□ -0.56
USP3-206ENST00000558157 OR52Z1P0C646 297 aa11.58□□□□□ -0.56
USP3-206ENST00000558157 FAM200BP0CF97 657 aa11.58□□□□□ -0.56
USP3-206ENST00000558157 IL9RQ01113 521 aa11.58□□□□□ -0.56
USP3-206ENST00000558157 RNASELQ05823 741 aaKnown RBP11.58□□□□□ -0.56
USP3-206ENST00000558157 INF2Q27J81 1249 aa11.58□□□□□ -0.56
USP3-206ENST00000558157 SH3D19Q5HYK7 790 aa11.58□□□□□ -0.56
USP3-206ENST00000558157 DAB2IPQ5VWQ8 1189 aa11.58□□□□□ -0.56
USP3-206ENST00000558157 ZNF571Q7Z3V5 609 aaPredicted RBP11.58□□□□□ -0.56
USP3-206ENST00000558157 ZC3H18Q86VM9 953 aaKnown RBP11.58□□□□□ -0.56
USP3-206ENST00000558157 ERO1BQ86YB8 467 aa11.58□□□□□ -0.56
USP3-206ENST00000558157 CTNNBL1Q8WYA6 563 aaPredicted RBP11.58□□□□□ -0.56
USP3-206ENST00000558157 PLIN2Q99541 437 aa11.58□□□□□ -0.56
USP3-206ENST00000558157 ZNF184Q99676 751 aaPredicted RBP11.58□□□□□ -0.56
USP3-206ENST00000558157 STX18Q9P2W9 335 aaKnown RBP11.58□□□□□ -0.56
USP3-206ENST00000558157 HAO1Q9UJM8 370 aa11.58□□□□□ -0.56
USP3-206ENST00000558157 PPP1R9AQ9ULJ8 1098 aa11.58□□□□□ -0.56
USP3-206ENST00000558157 TBC1D30Q9Y2I9 924 aa11.58□□□□□ -0.56
USP3-206ENST00000558157 SNX24Q9Y343 169 aa11.58□□□□□ -0.56
USP3-206ENST00000558157 ADGRA3Q8IWK6 1321 aa11.58□□□□□ -0.56
USP3-206ENST00000558157 SYNGAP1Q96PV0 1343 aa11.58□□□□□ -0.56
USP3-206ENST00000558157 TAC1P20366 129 aa11.57□□□□□ -0.56
USP3-206ENST00000558157 TARSP26639 723 aaKnown RBP11.57□□□□□ -0.56
USP3-206ENST00000558157 PTGIRP43119 386 aa11.57□□□□□ -0.56
USP3-206ENST00000558157 SLCO1A2P46721 670 aa11.57□□□□□ -0.56
USP3-206ENST00000558157 PPATQ06203 517 aa11.57□□□□□ -0.56
USP3-206ENST00000558157 LIN52Q52LA3 116 aa11.57□□□□□ -0.56
USP3-206ENST00000558157 MGARPQ8TDB4 240 aa11.57□□□□□ -0.56
USP3-206ENST00000558157 ART4Q93070 314 aa11.57□□□□□ -0.56
USP3-206ENST00000558157 PSTPIP2Q9H939 334 aa11.57□□□□□ -0.56
USP3-206ENST00000558157 NDUFA13Q9P0J0 144 aa11.57□□□□□ -0.56
USP3-206ENST00000558157 CHKBQ9Y259 395 aa11.57□□□□□ -0.56
USP3-206ENST00000558157 NCANO14594 1321 aa11.57□□□□□ -0.56
USP3-206ENST00000558157 PASKQ96RG2 1323 aa11.57□□□□□ -0.56
USP3-206ENST00000558157 RBBP6Q7Z6E9 1792 aaKnown RBP11.57□□□□□ -0.56
USP3-206ENST00000558157 H0Y3Z8 333 aa11.57□□□□□ -0.56
USP3-206ENST00000558157 DDX3YO15523 660 aaKnown RBP11.57□□□□□ -0.56
USP3-206ENST00000558157 ENTPD5O75356 428 aa11.57□□□□□ -0.56
USP3-206ENST00000558157 BRAFP15056 766 aa11.57□□□□□ -0.56
USP3-206ENST00000558157 EPHB2P29323 1055 aa11.57□□□□□ -0.56
USP3-206ENST00000558157 CLK2P49760 499 aaKnown RBP11.57□□□□□ -0.56
USP3-206ENST00000558157 SCNN1BP51168 640 aa11.57□□□□□ -0.56
USP3-206ENST00000558157 ARID5AQ03989 594 aa11.57□□□□□ -0.56
USP3-206ENST00000558157 NONOQ15233 471 aaKnown RBP eCLIP11.57□□□□□ -0.56
USP3-206ENST00000558157 LDLRAD1Q5T700 205 aa11.57□□□□□ -0.56
USP3-206ENST00000558157 CEP128Q6ZU80 1094 aa11.57□□□□□ -0.56
USP3-206ENST00000558157 CCNJLQ8IV13 435 aa11.57□□□□□ -0.56
USP3-206ENST00000558157 GPIHBP1Q8IV16 184 aa11.57□□□□□ -0.56
USP3-206ENST00000558157 MYOCDQ8IZQ8 938 aa11.57□□□□□ -0.56
USP3-206ENST00000558157 LRRC43Q8N309 656 aa11.57□□□□□ -0.56
USP3-206ENST00000558157 NME8Q8N427 588 aa11.57□□□□□ -0.56
USP3-206ENST00000558157 TTC8Q8TAM2 541 aa11.57□□□□□ -0.56
USP3-206ENST00000558157 RBM46Q8TBY0 533 aaKnown RBP11.57□□□□□ -0.56
USP3-206ENST00000558157 ZNF398Q8TD17 642 aa11.57□□□□□ -0.56
USP3-206ENST00000558157 ATG4CQ96DT6 458 aa11.57□□□□□ -0.56
USP3-206ENST00000558157 HIC2Q96JB3 615 aa11.57□□□□□ -0.56
USP3-206ENST00000558157 GOLPH3Q9H4A6 298 aa11.57□□□□□ -0.56
USP3-206ENST00000558157 KCNK9Q9NPC2 374 aa11.57□□□□□ -0.56
USP3-206ENST00000558157 ARMCX3Q9UH62 379 aaPredicted RBP11.57□□□□□ -0.56
USP3-206ENST00000558157 LGALS13Q9UHV8 139 aa11.57□□□□□ -0.56
USP3-206ENST00000558157 ZNF536O15090 1300 aa11.57□□□□□ -0.56
USP3-206ENST00000558157 USP17L15C9J2P7 530 aa11.56□□□□□ -0.56
USP3-206ENST00000558157 USP17L13C9JLJ4 530 aa11.56□□□□□ -0.56
USP3-206ENST00000558157 USP17L11C9JVI0 530 aa11.56□□□□□ -0.56
USP3-206ENST00000558157 USP17L18D6R9N7 530 aa11.56□□□□□ -0.56
USP3-206ENST00000558157 USP17L22D6RA61 530 aa11.56□□□□□ -0.56
USP3-206ENST00000558157 USP17L17D6RBQ6 530 aa11.56□□□□□ -0.56
USP3-206ENST00000558157 USP17L19D6RCP7 530 aa11.56□□□□□ -0.56
USP3-206ENST00000558157 USP17L20D6RJB6 530 aa11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms