RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 KRT10P13645 584 aa13.74□□□□□ -0.21
LDLR-207ENST00000558013 SP2Q02086 613 aa13.74□□□□□ -0.21
LDLR-207ENST00000558013 CLUL1Q15846 466 aa13.74□□□□□ -0.21
LDLR-207ENST00000558013 TNFAIP8L3Q5GJ75 292 aa13.74□□□□□ -0.21
LDLR-207ENST00000558013 CYB5D1Q6P9G0 228 aa13.74□□□□□ -0.21
LDLR-207ENST00000558013 TMEM270Q6UE05 265 aa13.74□□□□□ -0.21
LDLR-207ENST00000558013 TMC2Q8TDI7 906 aa13.74□□□□□ -0.21
LDLR-207ENST00000558013 NTPCRQ9BSD7 190 aaKnown RBP13.74□□□□□ -0.21
LDLR-207ENST00000558013 DCLK3Q9C098 648 aa13.74□□□□□ -0.21
LDLR-207ENST00000558013 POLR3FQ9H1D9 316 aaPredicted RBP13.74□□□□□ -0.21
LDLR-207ENST00000558013 KCNK9Q9NPC2 374 aa13.74□□□□□ -0.21
LDLR-207ENST00000558013 C1orf112Q9NSG2 853 aa13.74□□□□□ -0.21
LDLR-207ENST00000558013 PARP2Q9UGN5 583 aa13.74□□□□□ -0.21
LDLR-207ENST00000558013 ZNRF3Q9ULT6 936 aa13.74□□□□□ -0.21
LDLR-207ENST00000558013 CCT8L1PA6NM43 557 aa13.73□□□□□ -0.21
LDLR-207ENST00000558013 KCNA2P16389 499 aa13.73□□□□□ -0.21
LDLR-207ENST00000558013 PRKCEQ02156 737 aa13.73□□□□□ -0.21
LDLR-207ENST00000558013 MAP3K10Q02779 954 aa13.73□□□□□ -0.21
LDLR-207ENST00000558013 ZKSCAN8Q15776 578 aaPredicted RBP13.73□□□□□ -0.21
LDLR-207ENST00000558013 NBPF12Q5TAG4 269 aaPredicted RBP13.73□□□□□ -0.21
LDLR-207ENST00000558013 SNRNP48Q6IEG0 339 aaKnown RBP13.73□□□□□ -0.21
LDLR-207ENST00000558013 VSTM1Q6UX27 236 aa13.73□□□□□ -0.21
LDLR-207ENST00000558013 PIGWQ7Z7B1 504 aa13.73□□□□□ -0.21
LDLR-207ENST00000558013 TEX2Q8IWB9 1127 aa13.73□□□□□ -0.21
LDLR-207ENST00000558013 C12orf50Q8NA57 414 aaPredicted RBP13.73□□□□□ -0.21
LDLR-207ENST00000558013 C3orf20Q8ND61 904 aa13.73□□□□□ -0.21
LDLR-207ENST00000558013 VTI1AQ96AJ9 217 aa13.73□□□□□ -0.21
LDLR-207ENST00000558013 DOCK5Q9H7D0 1870 aa13.73□□□□□ -0.21
LDLR-207ENST00000558013 ANKFY1Q9P2R3 1169 aa13.73□□□□□ -0.21
LDLR-207ENST00000558013 TCP11X1B4DZS4 312 aa13.73□□□□□ -0.21
LDLR-207ENST00000558013 ZSCAN5DPP0CG00 497 aa13.73□□□□□ -0.21
LDLR-207ENST00000558013 RPL7AP62424 266 aaKnown RBP13.73□□□□□ -0.21
LDLR-207ENST00000558013 KAZNQ674X7 775 aa13.73□□□□□ -0.21
LDLR-207ENST00000558013 MORC4Q8TE76 937 aa13.73□□□□□ -0.21
LDLR-207ENST00000558013 TAOK3Q9H2K8 898 aa13.73□□□□□ -0.21
LDLR-207ENST00000558013 AGAP1Q9UPQ3 857 aa13.73□□□□□ -0.21
LDLR-207ENST00000558013 FDX1P10109 184 aa13.73□□□□□ -0.21
LDLR-207ENST00000558013 ETS1P14921 441 aa13.73□□□□□ -0.21
LDLR-207ENST00000558013 SFNP31947 248 aa13.73□□□□□ -0.21
LDLR-207ENST00000558013 NSFP46459 744 aaKnown RBP13.73□□□□□ -0.21
LDLR-207ENST00000558013 FKBP1CQ5VVH2 108 aa13.73□□□□□ -0.21
LDLR-207ENST00000558013 CRELD2Q6UXH1 353 aaPredicted RBP13.73□□□□□ -0.21
LDLR-207ENST00000558013 OR5B17Q8NGF7 314 aa13.73□□□□□ -0.21
LDLR-207ENST00000558013 LPAR1Q92633 364 aa13.73□□□□□ -0.21
LDLR-207ENST00000558013 ZBED3Q96IU2 234 aaPredicted RBP13.73□□□□□ -0.21
LDLR-207ENST00000558013 CYP26B1Q9NR63 512 aa13.73□□□□□ -0.21
LDLR-207ENST00000558013 CENPFP49454 3210 aa13.72□□□□□ -0.21
LDLR-207ENST00000558013 PIAS1O75925 651 aa13.72□□□□□ -0.21
LDLR-207ENST00000558013 LIG4P49917 911 aa13.72□□□□□ -0.21
LDLR-207ENST00000558013 CDR1P51861 262 aa13.72□□□□□ -0.21
LDLR-207ENST00000558013 GHRHRQ02643 423 aa13.72□□□□□ -0.21
LDLR-207ENST00000558013 GCNT1Q02742 428 aa13.72□□□□□ -0.21
LDLR-207ENST00000558013 ZNF394Q53GI3 561 aa13.72□□□□□ -0.21
LDLR-207ENST00000558013 C15orf39Q6ZRI6 1047 aa13.72□□□□□ -0.21
LDLR-207ENST00000558013 CAPN12Q6ZSI9 719 aa13.72□□□□□ -0.21
LDLR-207ENST00000558013 NIM1KQ8IY84 436 aa13.72□□□□□ -0.21
LDLR-207ENST00000558013 DYDC1Q8WWB3 177 aa13.72□□□□□ -0.21
LDLR-207ENST00000558013 PDLIM7Q9NR12 457 aa13.72□□□□□ -0.21
LDLR-207ENST00000558013 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP13.72□□□□□ -0.218e-7■□□□□ 10.3
LDLR-207ENST00000558013 ANAPC5Q9UJX4 755 aa13.72□□□□□ -0.21
LDLR-207ENST00000558013 THAP12O43422 761 aa13.72□□□□□ -0.21
LDLR-207ENST00000558013 ZBED4O75132 1171 aa13.72□□□□□ -0.21
LDLR-207ENST00000558013 TTC4O95801 387 aa13.72□□□□□ -0.21
LDLR-207ENST00000558013 ATP4AP20648 1035 aa13.72□□□□□ -0.21
LDLR-207ENST00000558013 ACO1P21399 889 aaKnown RBP13.72□□□□□ -0.21
LDLR-207ENST00000558013 PIK3CAP42336 1068 aa13.72□□□□□ -0.21
LDLR-207ENST00000558013 ACTR2P61160 394 aa13.72□□□□□ -0.21
LDLR-207ENST00000558013 MTM1Q13496 603 aa13.72□□□□□ -0.21
LDLR-207ENST00000558013 TXNRD3NBQ6F5E7 133 aa13.72□□□□□ -0.21
LDLR-207ENST00000558013 CYP4F22Q6NT55 531 aa13.72□□□□□ -0.21
LDLR-207ENST00000558013 MON1BQ7L1V2 547 aa13.72□□□□□ -0.21
LDLR-207ENST00000558013 RTKN2Q8IZC4 609 aa13.72□□□□□ -0.21
LDLR-207ENST00000558013 TMEM130Q8N3G9 435 aa13.72□□□□□ -0.21
LDLR-207ENST00000558013 SNF8Q96H20 258 aa13.72□□□□□ -0.21
LDLR-207ENST00000558013 SCLT1Q96NL6 688 aa13.72□□□□□ -0.21
LDLR-207ENST00000558013 FNBP1Q96RU3 617 aa13.72□□□□□ -0.21
LDLR-207ENST00000558013 TARS2Q9BW92 718 aaKnown RBP13.72□□□□□ -0.21
LDLR-207ENST00000558013 FHDC1Q9C0D6 1143 aaPredicted RBP13.72□□□□□ -0.21
LDLR-207ENST00000558013 NINJ2Q9NZG7 142 aa13.72□□□□□ -0.21
LDLR-207ENST00000558013 PCDHB2Q9Y5E7 798 aa13.72□□□□□ -0.21
LDLR-207ENST00000558013 HMGCS2P54868 508 aa13.71□□□□□ -0.21
LDLR-207ENST00000558013 MAMLD1Q13495 774 aa13.71□□□□□ -0.21
LDLR-207ENST00000558013 ZACNQ401N2 412 aa13.71□□□□□ -0.21
LDLR-207ENST00000558013 BRDTQ58F21 947 aaPredicted RBP13.71□□□□□ -0.21
LDLR-207ENST00000558013 SAMD3Q8N6K7 520 aa13.71□□□□□ -0.21
LDLR-207ENST00000558013 ASAP3Q8TDY4 903 aa13.71□□□□□ -0.21
LDLR-207ENST00000558013 SPIRE2Q8WWL2 714 aa13.71□□□□□ -0.21
LDLR-207ENST00000558013 HAUS1Q96CS2 278 aa13.71□□□□□ -0.21
LDLR-207ENST00000558013 MRRFQ96E11 262 aaKnown RBP13.71□□□□□ -0.21
LDLR-207ENST00000558013 THOC1Q96FV9 657 aaKnown RBP13.71□□□□□ -0.21
LDLR-207ENST00000558013 CEP89Q96ST8 783 aa13.71□□□□□ -0.21
LDLR-207ENST00000558013 TMEM109Q9BVC6 243 aa13.71□□□□□ -0.21
LDLR-207ENST00000558013 ADAM22Q9P0K1 906 aa13.71□□□□□ -0.21
LDLR-207ENST00000558013 WHRNQ9P202 907 aa13.71□□□□□ -0.21
LDLR-207ENST00000558013 TPX2Q9ULW0 747 aaKnown RBP13.71□□□□□ -0.21
LDLR-207ENST00000558013 NUB1Q9Y5A7 615 aa13.71□□□□□ -0.21
LDLR-207ENST00000558013 PCDHB4Q9Y5E5 795 aa13.71□□□□□ -0.21
LDLR-207ENST00000558013 C4BPAP04003 597 aaKnown RBP13.71□□□□□ -0.21
LDLR-207ENST00000558013 ATF2P15336 505 aa13.71□□□□□ -0.21
LDLR-207ENST00000558013 SNRPFP62306 86 aaKnown RBP13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms