RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 CKAP2Q8WWK9 683 aa13.13□□□□□ -0.31
LDLR-205ENST00000557933 CD101Q93033 1021 aa13.13□□□□□ -0.31
LDLR-205ENST00000557933 NPHS2Q9NP85 383 aa13.13□□□□□ -0.31
LDLR-205ENST00000557933 SLC5A4Q9NY91 659 aa13.13□□□□□ -0.31
LDLR-205ENST00000557933 CHKBQ9Y259 395 aa13.13□□□□□ -0.31
LDLR-205ENST00000557933 EXOC1LA0A1B0GW35 172 aa13.13□□□□□ -0.31
LDLR-205ENST00000557933 MIF4GDA9UHW6 222 aaKnown RBP13.13□□□□□ -0.31
LDLR-205ENST00000557933 KIF1CO43896 1103 aaKnown RBP13.13□□□□□ -0.31
LDLR-205ENST00000557933 GAP43P17677 238 aa13.13□□□□□ -0.31
LDLR-205ENST00000557933 RPA3P35244 121 aaPredicted RBP13.13□□□□□ -0.31
LDLR-205ENST00000557933 PCK1P35558 622 aa13.13□□□□□ -0.31
LDLR-205ENST00000557933 MMP14P50281 582 aa13.13□□□□□ -0.31
LDLR-205ENST00000557933 PRELPP51888 382 aa13.13□□□□□ -0.31
LDLR-205ENST00000557933 TAS2R40P59535 323 aa13.13□□□□□ -0.31
LDLR-205ENST00000557933 FKBP1AP62942 108 aaKnown RBP13.13□□□□□ -0.31
LDLR-205ENST00000557933 SMAD1Q15797 465 aaKnown RBP13.13□□□□□ -0.31
LDLR-205ENST00000557933 ZNF365Q70YC5 407 aa13.13□□□□□ -0.31
LDLR-205ENST00000557933 MBOAT7Q96N66 472 aa13.13□□□□□ -0.31
LDLR-205ENST00000557933 RBM15Q96T37 977 aaKnown RBP eCLIP13.13□□□□□ -0.315e-8■■■■□ 21.2
LDLR-205ENST00000557933 OSBPL1AQ9BXW6 950 aa13.13□□□□□ -0.31
LDLR-205ENST00000557933 PIDD1Q9HB75 910 aa13.13□□□□□ -0.31
LDLR-205ENST00000557933 SPDYE5A6NIY4 337 aa13.12□□□□□ -0.31
LDLR-205ENST00000557933 IVDP26440 423 aa13.12□□□□□ -0.31
LDLR-205ENST00000557933 CPA2P48052 419 aa13.12□□□□□ -0.31
LDLR-205ENST00000557933 ZNF131P52739 623 aa13.12□□□□□ -0.31
LDLR-205ENST00000557933 PLCB3Q01970 1234 aa13.12□□□□□ -0.31
LDLR-205ENST00000557933 UGCGQ16739 394 aa13.12□□□□□ -0.31
LDLR-205ENST00000557933 GALNTL6Q49A17 601 aa13.12□□□□□ -0.31
LDLR-205ENST00000557933 MDH1BQ5I0G3 518 aa13.12□□□□□ -0.31
LDLR-205ENST00000557933 POLR3CQ9BUI4 534 aaPredicted RBP13.12□□□□□ -0.31
LDLR-205ENST00000557933 DMAC2Q9NW81 257 aa13.12□□□□□ -0.31
LDLR-205ENST00000557933 CNOT7Q9UIV1 285 aaKnown RBP13.12□□□□□ -0.31
LDLR-205ENST00000557933 FER1L6Q2WGJ9 1857 aa13.12□□□□□ -0.31
LDLR-205ENST00000557933 GSTA1P08263 222 aa13.12□□□□□ -0.31
LDLR-205ENST00000557933 CA4P22748 312 aa13.12□□□□□ -0.31
LDLR-205ENST00000557933 C11orf63Q6NUN7 778 aa13.12□□□□□ -0.31
LDLR-205ENST00000557933 HAUS6Q7Z4H7 955 aa13.12□□□□□ -0.31
LDLR-205ENST00000557933 SNF8Q96H20 258 aa13.12□□□□□ -0.31
LDLR-205ENST00000557933 AGBL1Q96MI9 1066 aa13.12□□□□□ -0.31
LDLR-205ENST00000557933 NUDCD1Q96RS6 583 aa13.12□□□□□ -0.31
LDLR-205ENST00000557933 SGIP1Q9BQI5 828 aa13.12□□□□□ -0.31
LDLR-205ENST00000557933 RXFP1Q9HBX9 757 aa13.12□□□□□ -0.31
LDLR-205ENST00000557933 UBN1Q9NPG3 1134 aa13.12□□□□□ -0.31
LDLR-205ENST00000557933 CFAP73A6NFT4 308 aa13.12□□□□□ -0.31
LDLR-205ENST00000557933 HARSP12081 509 aaKnown RBP13.12□□□□□ -0.31
LDLR-205ENST00000557933 ALAS1P13196 640 aa13.12□□□□□ -0.31
LDLR-205ENST00000557933 NT5C2P49902 561 aa13.12□□□□□ -0.31
LDLR-205ENST00000557933 CETN1Q12798 172 aa13.12□□□□□ -0.31
LDLR-205ENST00000557933 SPP2Q13103 211 aa13.12□□□□□ -0.31
LDLR-205ENST00000557933 SLC1A5Q15758 541 aa13.12□□□□□ -0.31
LDLR-205ENST00000557933 CEP55Q53EZ4 464 aa13.12□□□□□ -0.31
LDLR-205ENST00000557933 ZNF394Q53GI3 561 aa13.12□□□□□ -0.31
LDLR-205ENST00000557933 PSPC1Q8WXF1 523 aaKnown RBP13.12□□□□□ -0.31
LDLR-205ENST00000557933 P3H4Q92791 437 aa13.12□□□□□ -0.31
LDLR-205ENST00000557933 CSRNP1Q96S65 589 aa13.12□□□□□ -0.31
LDLR-205ENST00000557933 PPP1R12CQ9BZL4 782 aa13.12□□□□□ -0.31
LDLR-205ENST00000557933 ARHGEF3Q9NR81 526 aa13.12□□□□□ -0.31
LDLR-205ENST00000557933 PARP2Q9UGN5 583 aa13.12□□□□□ -0.31
LDLR-205ENST00000557933 PHTF1Q9UMS5 762 aa13.12□□□□□ -0.31
LDLR-205ENST00000557933 PLIN4Q96Q06 1357 aa13.11□□□□□ -0.31
LDLR-205ENST00000557933 A0A0G2JND7 137 aa13.11□□□□□ -0.31
LDLR-205ENST00000557933 ITGB5P18084 799 aa13.11□□□□□ -0.31
LDLR-205ENST00000557933 ADSSP30520 456 aa13.11□□□□□ -0.31
LDLR-205ENST00000557933 DRG2P55039 364 aaKnown RBP13.11□□□□□ -0.31
LDLR-205ENST00000557933 SNRNP35Q16560 246 aaKnown RBP13.11□□□□□ -0.31
LDLR-205ENST00000557933 MIS18BP1Q6P0N0 1132 aa13.11□□□□□ -0.31
LDLR-205ENST00000557933 MIER3Q7Z3K6 550 aa13.11□□□□□ -0.31
LDLR-205ENST00000557933 APBB1IPQ7Z5R6 666 aaPredicted RBP13.11□□□□□ -0.31
LDLR-205ENST00000557933 XXYLT1Q8NBI6 393 aa13.11□□□□□ -0.31
LDLR-205ENST00000557933 SPDYE1Q8NFV5 336 aaPredicted RBP13.11□□□□□ -0.31
LDLR-205ENST00000557933 LRRN4Q8WUT4 740 aa13.11□□□□□ -0.31
LDLR-205ENST00000557933 COA1Q9GZY4 146 aa13.11□□□□□ -0.31
LDLR-205ENST00000557933 STMN4Q9H169 189 aaPredicted RBP13.11□□□□□ -0.31
LDLR-205ENST00000557933 WNT8AQ9H1J5 351 aa13.11□□□□□ -0.31
LDLR-205ENST00000557933 ZHX2Q9Y6X8 837 aa13.11□□□□□ -0.31
LDLR-205ENST00000557933 EIF3DO15371 548 aaKnown RBP eCLIP13.11□□□□□ -0.31
LDLR-205ENST00000557933 PCNX4Q63HM2 1172 aa13.11□□□□□ -0.31
LDLR-205ENST00000557933 ZBED8Q8IZ13 594 aa13.11□□□□□ -0.31
LDLR-205ENST00000557933 FAM13CQ8NE31 585 aa13.11□□□□□ -0.31
LDLR-205ENST00000557933 NACC1Q96RE7 527 aa13.11□□□□□ -0.31
LDLR-205ENST00000557933 DPPA5A6NC42 116 aa13.1□□□□□ -0.31
LDLR-205ENST00000557933 UNC5CO95185 931 aa13.1□□□□□ -0.31
LDLR-205ENST00000557933 CHRM1P11229 460 aaPredicted RBP13.1□□□□□ -0.31
LDLR-205ENST00000557933 MYCLP12524 364 aaPredicted RBP13.1□□□□□ -0.31
LDLR-205ENST00000557933 TAF1BQ53T94 588 aaPredicted RBP13.1□□□□□ -0.31
LDLR-205ENST00000557933 TXNRD3NBQ6F5E7 133 aa13.1□□□□□ -0.31
LDLR-205ENST00000557933 ISLR2Q6UXK2 745 aa13.1□□□□□ -0.31
LDLR-205ENST00000557933 MTDHQ86UE4 582 aaKnown RBP13.1□□□□□ -0.31
LDLR-205ENST00000557933 UCMAQ8WVF2 138 aa13.1□□□□□ -0.31
LDLR-205ENST00000557933 RUNDC3BQ96NL0 473 aa13.1□□□□□ -0.31
LDLR-205ENST00000557933 LRRC37BQ96QE4 947 aa13.1□□□□□ -0.31
LDLR-205ENST00000557933 NAP1L4Q99733 375 aaKnown RBP13.1□□□□□ -0.31
LDLR-205ENST00000557933 TBC1D10AQ9BXI6 508 aa13.1□□□□□ -0.31
LDLR-205ENST00000557933 AP1G2O75843 785 aa13.1□□□□□ -0.31
LDLR-205ENST00000557933 EIF2AK2P19525 551 aaKnown RBP13.1□□□□□ -0.31
LDLR-205ENST00000557933 PIK3CAP42336 1068 aa13.1□□□□□ -0.31
LDLR-205ENST00000557933 STAT2P52630 851 aa13.1□□□□□ -0.31
LDLR-205ENST00000557933 WNT7BP56706 349 aa13.1□□□□□ -0.31
LDLR-205ENST00000557933 TNFAIP8L3Q5GJ75 292 aa13.1□□□□□ -0.31
LDLR-205ENST00000557933 MAGEC3Q8TD91 643 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms