RNA–Protein interactions for RNA: ENST00000557466.1

VIPAS39-210, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 4

Gene VIPAS39, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-210ENST00000557466 LRRC63Q05C16 580 aa16.09■□□□□ 0.17
VIPAS39-210ENST00000557466 PSMD6Q15008 389 aa16.09■□□□□ 0.17
VIPAS39-210ENST00000557466 DPCR1Q3MIW9 517 aa16.09■□□□□ 0.17
VIPAS39-210ENST00000557466 LMBRD2Q68DH5 695 aaPredicted RBP16.09■□□□□ 0.17
VIPAS39-210ENST00000557466 FUT10Q6P4F1 479 aa16.09■□□□□ 0.17
VIPAS39-210ENST00000557466 CD300LGQ6UXG3 332 aa16.09■□□□□ 0.17
VIPAS39-210ENST00000557466 DDX53Q86TM3 631 aaKnown RBP16.09■□□□□ 0.17
VIPAS39-210ENST00000557466 NT5DC4Q86YG4 428 aa16.09■□□□□ 0.17
VIPAS39-210ENST00000557466 ZC3H3Q8IXZ2 948 aaKnown RBP16.09■□□□□ 0.17
VIPAS39-210ENST00000557466 BEST2Q8NFU1 509 aa16.09■□□□□ 0.17
VIPAS39-210ENST00000557466 PLEKHO2Q8TD55 490 aa16.09■□□□□ 0.17
VIPAS39-210ENST00000557466 MRPL38Q96DV4 380 aaKnown RBP16.09■□□□□ 0.17
VIPAS39-210ENST00000557466 DDX27Q96GQ7 796 aaKnown RBP16.09■□□□□ 0.17
VIPAS39-210ENST00000557466 MFSD14AQ96MC6 490 aa16.09■□□□□ 0.17
VIPAS39-210ENST00000557466 GZF1Q9H116 711 aaPredicted RBP16.09■□□□□ 0.17
VIPAS39-210ENST00000557466 TLR9Q9NR96 1032 aa16.09■□□□□ 0.17
VIPAS39-210ENST00000557466 ADAM28Q9UKQ2 775 aa16.09■□□□□ 0.17
VIPAS39-210ENST00000557466 PCDHGC5Q9Y5F6 944 aa16.09■□□□□ 0.17
VIPAS39-210ENST00000557466 GTF3C5Q9Y5Q8 519 aaPredicted RBP16.09■□□□□ 0.17
VIPAS39-210ENST00000557466 MTCH2Q9Y6C9 303 aa16.09■□□□□ 0.17
VIPAS39-210ENST00000557466 PRRC2BQ5JSZ5 2229 aaKnown RBP16.09■□□□□ 0.17
VIPAS39-210ENST00000557466 CHD7Q9P2D1 2997 aa16.08■□□□□ 0.17
VIPAS39-210ENST00000557466 PPEF2O14830 753 aa16.08■□□□□ 0.16
VIPAS39-210ENST00000557466 FSCN2O14926 492 aa16.08■□□□□ 0.16
VIPAS39-210ENST00000557466 AKAP3O75969 853 aa16.08■□□□□ 0.16
VIPAS39-210ENST00000557466 B3GAT3O94766 335 aa16.08■□□□□ 0.16
VIPAS39-210ENST00000557466 POU3F3P20264 500 aaPredicted RBP16.08■□□□□ 0.16
VIPAS39-210ENST00000557466 PTMSP20962 102 aa16.08■□□□□ 0.16
VIPAS39-210ENST00000557466 RPL13P26373 211 aaKnown RBP16.08■□□□□ 0.16
VIPAS39-210ENST00000557466 RPL9P32969 192 aaKnown RBP16.08■□□□□ 0.16
VIPAS39-210ENST00000557466 STX17P56962 302 aa16.08■□□□□ 0.16
VIPAS39-210ENST00000557466 NLRP12P59046 1061 aa16.08■□□□□ 0.16
VIPAS39-210ENST00000557466 ERVFC1P60507 584 aa16.08■□□□□ 0.16
VIPAS39-210ENST00000557466 TFAMQ00059 246 aaKnown RBP16.08■□□□□ 0.16
VIPAS39-210ENST00000557466 PAK1Q13153 545 aa16.08■□□□□ 0.16
VIPAS39-210ENST00000557466 ADAM9Q13443 819 aa16.08■□□□□ 0.16
VIPAS39-210ENST00000557466 SURF1Q15526 300 aa16.08■□□□□ 0.16
VIPAS39-210ENST00000557466 PTPROQ16827 1216 aa16.08■□□□□ 0.16
VIPAS39-210ENST00000557466 TTI2Q6NXR4 508 aa16.08■□□□□ 0.16
VIPAS39-210ENST00000557466 CAVIN1Q6NZI2 390 aaKnown RBP16.08■□□□□ 0.16
VIPAS39-210ENST00000557466 DCLRE1AQ6PJP8 1040 aa16.08■□□□□ 0.16
VIPAS39-210ENST00000557466 RNF168Q8IYW5 571 aaPredicted RBP16.08■□□□□ 0.16
VIPAS39-210ENST00000557466 CCDC127Q96BQ5 260 aa16.08■□□□□ 0.16
VIPAS39-210ENST00000557466 EEF2KMTQ96G04 330 aa16.08■□□□□ 0.16
VIPAS39-210ENST00000557466 CGRRF1Q99675 332 aa16.08■□□□□ 0.16
VIPAS39-210ENST00000557466 HERC2P3Q9BVR0 1158 aa16.08■□□□□ 0.16
VIPAS39-210ENST00000557466 GPR62Q9BZJ7 368 aa16.08■□□□□ 0.16
VIPAS39-210ENST00000557466 MTMR12Q9C0I1 747 aa16.08■□□□□ 0.16
VIPAS39-210ENST00000557466 ZBP1Q9H171 429 aa16.08■□□□□ 0.16
VIPAS39-210ENST00000557466 PUF60Q9UHX1 559 aaKnown RBP16.08■□□□□ 0.16
VIPAS39-210ENST00000557466 FRMD4BQ9Y2L6 1034 aa16.08■□□□□ 0.16
VIPAS39-210ENST00000557466 MAPK13O15264 365 aa16.07■□□□□ 0.16
VIPAS39-210ENST00000557466 TADA2AO75478 443 aa16.07■□□□□ 0.16
VIPAS39-210ENST00000557466 DLATP10515 647 aaKnown RBP16.07■□□□□ 0.16
VIPAS39-210ENST00000557466 BRCC3P46736 316 aa16.07■□□□□ 0.16
VIPAS39-210ENST00000557466 KLHL40Q2TBA0 621 aa16.07■□□□□ 0.16
VIPAS39-210ENST00000557466 WDR49Q8IV35 697 aa16.07■□□□□ 0.16
VIPAS39-210ENST00000557466 VPS52Q8N1B4 723 aa16.07■□□□□ 0.16
VIPAS39-210ENST00000557466 MLKLQ8NB16 471 aa16.07■□□□□ 0.16
VIPAS39-210ENST00000557466 OR5B17Q8NGF7 314 aa16.07■□□□□ 0.16
VIPAS39-210ENST00000557466 DUSP9Q99956 384 aaKnown RBP16.07■□□□□ 0.16
VIPAS39-210ENST00000557466 TCF25Q9BQ70 676 aa16.07■□□□□ 0.16
VIPAS39-210ENST00000557466 ENTPD7Q9NQZ7 604 aa16.07■□□□□ 0.16
VIPAS39-210ENST00000557466 INTS13Q9NVM9 706 aa16.07■□□□□ 0.16
VIPAS39-210ENST00000557466 DPP3Q9NY33 737 aa16.07■□□□□ 0.16
VIPAS39-210ENST00000557466 LMCD1Q9NZU5 365 aa16.07■□□□□ 0.16
VIPAS39-210ENST00000557466 SF3B1O75533 1304 aaKnown RBP eCLIP16.07■□□□□ 0.16
VIPAS39-210ENST00000557466 MYO7AQ13402 2215 aa16.07■□□□□ 0.16
VIPAS39-210ENST00000557466 ANO9A1A5B4 782 aa16.06■□□□□ 0.16
VIPAS39-210ENST00000557466 BICDL2A1A5D9 508 aa16.06■□□□□ 0.16
VIPAS39-210ENST00000557466 LRRIQ3A6PVS8 624 aaPredicted RBP16.06■□□□□ 0.16
VIPAS39-210ENST00000557466 I3L4J1 428 aa16.06■□□□□ 0.16
VIPAS39-210ENST00000557466 CETN3O15182 167 aa16.06■□□□□ 0.16
VIPAS39-210ENST00000557466 SOD2P04179 222 aa16.06■□□□□ 0.16
VIPAS39-210ENST00000557466 TMEM191BP0C7N4 346 aa16.06■□□□□ 0.16
VIPAS39-210ENST00000557466 PSMC2P35998 433 aaKnown RBP16.06■□□□□ 0.16
VIPAS39-210ENST00000557466 FKBP3Q00688 224 aaKnown RBP16.06■□□□□ 0.16
VIPAS39-210ENST00000557466 TIGD5Q53EQ6 642 aa16.06■□□□□ 0.16
VIPAS39-210ENST00000557466 PLPP4Q5VZY2 271 aa16.06■□□□□ 0.16
VIPAS39-210ENST00000557466 C9orf57Q5W0N0 161 aa16.06■□□□□ 0.16
VIPAS39-210ENST00000557466 FOXR2Q6PJQ5 311 aa16.06■□□□□ 0.16
VIPAS39-210ENST00000557466 TAS1R1Q7RTX1 841 aa16.06■□□□□ 0.16
VIPAS39-210ENST00000557466 FAM186BQ8IYM0 893 aa16.06■□□□□ 0.16
VIPAS39-210ENST00000557466 MICALL1Q8N3F8 863 aa16.06■□□□□ 0.16
VIPAS39-210ENST00000557466 C1orf127Q8N9H9 656 aa16.06■□□□□ 0.16
VIPAS39-210ENST00000557466 PARD3BQ8TEW8 1205 aa16.06■□□□□ 0.16
VIPAS39-210ENST00000557466 AUTS2Q8WXX7 1259 aa16.06■□□□□ 0.16
VIPAS39-210ENST00000557466 B3GALT6Q96L58 329 aa16.06■□□□□ 0.16
VIPAS39-210ENST00000557466 MED15Q96RN5 788 aa16.06■□□□□ 0.16
VIPAS39-210ENST00000557466 FNBP1Q96RU3 617 aa16.06■□□□□ 0.16
VIPAS39-210ENST00000557466 POP1Q99575 1024 aaKnown RBP16.06■□□□□ 0.16
VIPAS39-210ENST00000557466 MKNK1Q9BUB5 465 aa16.06■□□□□ 0.16
VIPAS39-210ENST00000557466 PLXNA3P51805 1871 aa16.05■□□□□ 0.16
VIPAS39-210ENST00000557466 PIRO00625 290 aa16.05■□□□□ 0.16
VIPAS39-210ENST00000557466 ITGB3P05106 788 aa16.05■□□□□ 0.16
VIPAS39-210ENST00000557466 CTSAP10619 480 aa16.05■□□□□ 0.16
VIPAS39-210ENST00000557466 TNNI1P19237 187 aa16.05■□□□□ 0.16
VIPAS39-210ENST00000557466 POLR2BP30876 1174 aaKnown RBP16.05■□□□□ 0.16
VIPAS39-210ENST00000557466 DLG4P78352 724 aa16.05■□□□□ 0.16
VIPAS39-210ENST00000557466 SCARA3Q6AZY7 606 aa16.05■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms