RNA–Protein interactions for RNA: ENST00000557076.5

SCFD1-223, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 743 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-223ENST00000557076 MMP3P08254 477 aa5.53□□□□□ -1.52
SCFD1-223ENST00000557076 HOXB8P17481 243 aaPredicted RBP5.53□□□□□ -1.52
SCFD1-223ENST00000557076 DNAJB1P25685 340 aa5.53□□□□□ -1.52
SCFD1-223ENST00000557076 NRIP1P48552 1158 aa5.53□□□□□ -1.52
SCFD1-223ENST00000557076 IKQ13123 557 aaPredicted RBP5.53□□□□□ -1.52
SCFD1-223ENST00000557076 KCNC3Q14003 757 aa5.53□□□□□ -1.52
SCFD1-223ENST00000557076 COL9A2Q14055 689 aaPredicted RBP5.53□□□□□ -1.52
SCFD1-223ENST00000557076 ANGPT1Q15389 498 aa5.53□□□□□ -1.52
SCFD1-223ENST00000557076 LY6KQ17RY6 165 aa5.53□□□□□ -1.52
SCFD1-223ENST00000557076 KIAA0753Q2KHM9 967 aa5.53□□□□□ -1.52
SCFD1-223ENST00000557076 ADGRD2Q7Z7M1 963 aa5.53□□□□□ -1.52
SCFD1-223ENST00000557076 PPTC7Q8NI37 304 aa5.53□□□□□ -1.52
SCFD1-223ENST00000557076 ENOX1Q8TC92 643 aaKnown RBP5.53□□□□□ -1.52
SCFD1-223ENST00000557076 CLEC4DQ8WXI8 215 aa5.53□□□□□ -1.52
SCFD1-223ENST00000557076 LINC01599Q8WXQ3 324 aa5.53□□□□□ -1.52
SCFD1-223ENST00000557076 RUBCNQ92622 972 aa5.53□□□□□ -1.52
SCFD1-223ENST00000557076 BORCS6Q96GS4 357 aa5.53□□□□□ -1.52
SCFD1-223ENST00000557076 RTP3Q9BQQ7 232 aa5.53□□□□□ -1.52
SCFD1-223ENST00000557076 GZF1Q9H116 711 aaPredicted RBP5.53□□□□□ -1.52
SCFD1-223ENST00000557076 ZCCHC4Q9H5U6 513 aa5.53□□□□□ -1.52
SCFD1-223ENST00000557076 GCM1Q9NP62 436 aa5.53□□□□□ -1.52
SCFD1-223ENST00000557076 ARPP21Q9UBL0 812 aaPredicted RBP5.53□□□□□ -1.52
SCFD1-223ENST00000557076 REV1Q9UBZ9 1251 aa5.53□□□□□ -1.52
SCFD1-223ENST00000557076 BARX2Q9UMQ3 279 aaPredicted RBP5.53□□□□□ -1.52
SCFD1-223ENST00000557076 NR2E1Q9Y466 385 aa5.53□□□□□ -1.52
SCFD1-223ENST00000557076 COL11A1P12107 1806 aaPredicted RBP5.53□□□□□ -1.52
SCFD1-223ENST00000557076 FLNBO75369 2602 aaKnown RBP5.52□□□□□ -1.53
SCFD1-223ENST00000557076 ASPMQ8IZT6 3477 aa5.52□□□□□ -1.53
SCFD1-223ENST00000557076 PTPDC1A2A3K4 754 aa5.52□□□□□ -1.53
SCFD1-223ENST00000557076 OR14I1A6ND48 311 aa5.52□□□□□ -1.53
SCFD1-223ENST00000557076 GSG1L2A8MUP6 293 aa5.52□□□□□ -1.53
SCFD1-223ENST00000557076 HRKO00198 91 aa5.52□□□□□ -1.53
SCFD1-223ENST00000557076 GOLIM4O00461 696 aa5.52□□□□□ -1.53
SCFD1-223ENST00000557076 PI15O43692 258 aa5.52□□□□□ -1.53
SCFD1-223ENST00000557076 DGKIO75912 1065 aa5.52□□□□□ -1.53
SCFD1-223ENST00000557076 BMP7P18075 431 aa5.52□□□□□ -1.53
SCFD1-223ENST00000557076 AOC1P19801 751 aa5.52□□□□□ -1.53
SCFD1-223ENST00000557076 HOXC8P31273 242 aa5.52□□□□□ -1.53
SCFD1-223ENST00000557076 ATXN1P54253 815 aaKnown RBP5.52□□□□□ -1.53
SCFD1-223ENST00000557076 SNAP25P60880 206 aa5.52□□□□□ -1.53
SCFD1-223ENST00000557076 RPS6P62753 249 aaKnown RBP5.52□□□□□ -1.53
SCFD1-223ENST00000557076 DAB2P98082 770 aa5.52□□□□□ -1.53
SCFD1-223ENST00000557076 ARHGAP1Q07960 439 aa5.52□□□□□ -1.53
SCFD1-223ENST00000557076 PSMD2Q13200 908 aa5.52□□□□□ -1.53
SCFD1-223ENST00000557076 CAMK2GQ13555 558 aaPredicted RBP5.52□□□□□ -1.53
SCFD1-223ENST00000557076 BTG3Q14201 252 aaPredicted RBP5.52□□□□□ -1.53
SCFD1-223ENST00000557076 SYCE2Q6PIF2 218 aa5.52□□□□□ -1.53
SCFD1-223ENST00000557076 BTNL9Q6UXG8 535 aa5.52□□□□□ -1.53
SCFD1-223ENST00000557076 BNC2Q6ZN30 1099 aaPredicted RBP5.52□□□□□ -1.53
SCFD1-223ENST00000557076 RNF111Q6ZNA4 994 aa5.52□□□□□ -1.53
SCFD1-223ENST00000557076 RNF207Q6ZRF8 634 aa5.52□□□□□ -1.53
SCFD1-223ENST00000557076 RBM23Q86U06 439 aaKnown RBP5.52□□□□□ -1.53
SCFD1-223ENST00000557076 AACSQ86V21 672 aa5.52□□□□□ -1.53
SCFD1-223ENST00000557076 ERC1Q8IUD2 1116 aa5.52□□□□□ -1.53
SCFD1-223ENST00000557076 DHX37Q8IY37 1157 aaKnown RBP5.52□□□□□ -1.53
SCFD1-223ENST00000557076 CCDC105Q8IYK2 499 aa5.52□□□□□ -1.53
SCFD1-223ENST00000557076 RASGRP4Q8TDF6 673 aa5.52□□□□□ -1.53
SCFD1-223ENST00000557076 POF1BQ8WVV4 589 aa5.52□□□□□ -1.53
SCFD1-223ENST00000557076 ATP6V0A1Q93050 837 aa5.52□□□□□ -1.53
SCFD1-223ENST00000557076 RELTQ969Z4 430 aa5.52□□□□□ -1.53
SCFD1-223ENST00000557076 C20orf173Q96LM9 149 aa5.52□□□□□ -1.53
SCFD1-223ENST00000557076 NEK1Q96PY6 1258 aa5.52□□□□□ -1.53
SCFD1-223ENST00000557076 STRBPQ96SI9 672 aaKnown RBP5.52□□□□□ -1.53
SCFD1-223ENST00000557076 IWS1Q96ST2 819 aa5.52□□□□□ -1.53
SCFD1-223ENST00000557076 ALG1Q9BT22 464 aa5.52□□□□□ -1.53
SCFD1-223ENST00000557076 DDX24Q9GZR7 859 aaKnown RBP eCLIP5.52□□□□□ -1.53
SCFD1-223ENST00000557076 MFSD1Q9H3U5 465 aa5.52□□□□□ -1.53
SCFD1-223ENST00000557076 RNF19AQ9NV58 838 aa5.52□□□□□ -1.53
SCFD1-223ENST00000557076 PARP2Q9UGN5 583 aa5.52□□□□□ -1.53
SCFD1-223ENST00000557076 KLHL3Q9UH77 587 aa5.52□□□□□ -1.53
SCFD1-223ENST00000557076 DDX41Q9UJV9 622 aaKnown RBP5.52□□□□□ -1.53
SCFD1-223ENST00000557076 ZNF281Q9Y2X9 895 aa5.52□□□□□ -1.53
SCFD1-223ENST00000557076 KCTD3Q9Y597 815 aa5.52□□□□□ -1.53
SCFD1-223ENST00000557076 SIP14410 1827 aa5.52□□□□□ -1.53
SCFD1-223ENST00000557076 USP24Q9UPU5 2620 aa5.51□□□□□ -1.53
SCFD1-223ENST00000557076 PARP14Q460N5 1801 aa5.51□□□□□ -1.53
SCFD1-223ENST00000557076 ZZEF1O43149 2961 aa5.51□□□□□ -1.53
SCFD1-223ENST00000557076 SHISA3A0PJX4 238 aa5.51□□□□□ -1.53
SCFD1-223ENST00000557076 MINDY4BA8MYZ0 360 aa5.51□□□□□ -1.53
SCFD1-223ENST00000557076 PRR5-ARHGAP8B1AHC4 643 aa5.51□□□□□ -1.53
SCFD1-223ENST00000557076 PER2O15055 1255 aa5.51□□□□□ -1.53
SCFD1-223ENST00000557076 PSPNO60542 156 aa5.51□□□□□ -1.53
SCFD1-223ENST00000557076 EIF3JO75822 258 aaKnown RBP5.51□□□□□ -1.53
SCFD1-223ENST00000557076 F13A1P00488 732 aa5.51□□□□□ -1.53
SCFD1-223ENST00000557076 CALML3P27482 149 aa5.51□□□□□ -1.53
SCFD1-223ENST00000557076 RARSP54136 660 aaKnown RBP5.51□□□□□ -1.53
SCFD1-223ENST00000557076 ARHGAP8P85298 464 aa5.51□□□□□ -1.53
SCFD1-223ENST00000557076 UBE3AQ05086 875 aa5.51□□□□□ -1.53
SCFD1-223ENST00000557076 STXBP2Q15833 593 aa5.51□□□□□ -1.53
SCFD1-223ENST00000557076 DUSP6Q16828 381 aa5.51□□□□□ -1.53
SCFD1-223ENST00000557076 ANKRD54Q6NXT1 300 aa5.51□□□□□ -1.53
SCFD1-223ENST00000557076 SEPT14Q6ZU15 432 aa5.51□□□□□ -1.53
SCFD1-223ENST00000557076 KCTD1Q719H9 257 aa5.51□□□□□ -1.53
SCFD1-223ENST00000557076 CHST3Q7LGC8 479 aa5.51□□□□□ -1.53
SCFD1-223ENST00000557076 CMTR2Q8IYT2 770 aaKnown RBP5.51□□□□□ -1.53
SCFD1-223ENST00000557076 PHACTR4Q8IZ21 702 aa5.51□□□□□ -1.53
SCFD1-223ENST00000557076 ZDHHC14Q8IZN3 488 aa5.51□□□□□ -1.53
SCFD1-223ENST00000557076 CYP2W1Q8TAV3 490 aa5.51□□□□□ -1.53
SCFD1-223ENST00000557076 SYTL5Q8TDW5 730 aaPredicted RBP5.51□□□□□ -1.53
SCFD1-223ENST00000557076 MICAL1Q8TDZ2 1067 aa5.51□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms