RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	RPA3	P35244	121 aa	Predicted RBP	5.26	□□□□□ -1.57
SYNE2-223	ENST00000557005	SNX16	P57768	344 aa		5.26	□□□□□ -1.57
SYNE2-223	ENST00000557005	PTEN	P60484	403 aa		5.26	□□□□□ -1.57
SYNE2-223	ENST00000557005	MRPS35	P82673	323 aa	Known RBP	5.26	□□□□□ -1.57
SYNE2-223	ENST00000557005	CENPC	Q03188	943 aa		5.26	□□□□□ -1.57
SYNE2-223	ENST00000557005	TROAP	Q12815	778 aa		5.26	□□□□□ -1.57
SYNE2-223	ENST00000557005	MTMR1	Q13613	665 aa		5.26	□□□□□ -1.57
SYNE2-223	ENST00000557005	ECM1	Q16610	540 aa		5.26	□□□□□ -1.57
SYNE2-223	ENST00000557005	YTHDF3	Q7Z739	585 aa	Known RBP	5.26	□□□□□ -1.57
SYNE2-223	ENST00000557005	LNX1	Q8TBB1	728 aa	Predicted RBP	5.26	□□□□□ -1.57
SYNE2-223	ENST00000557005	TATDN2	Q93075	761 aa		5.26	□□□□□ -1.57
SYNE2-223	ENST00000557005	NUDT12	Q9BQG2	462 aa		5.26	□□□□□ -1.57
SYNE2-223	ENST00000557005	RIOK1	Q9BRS2	568 aa	Known RBP	5.26	□□□□□ -1.57
SYNE2-223	ENST00000557005	MKNK1	Q9BUB5	465 aa		5.26	□□□□□ -1.57
SYNE2-223	ENST00000557005	KIFC3	Q9BVG8	833 aa		5.26	□□□□□ -1.57
SYNE2-223	ENST00000557005	MOV10L1	Q9BXT6	1211 aa	Known RBP	5.26	□□□□□ -1.57
SYNE2-223	ENST00000557005	CYP39A1	Q9NYL5	469 aa		5.26	□□□□□ -1.57
SYNE2-223	ENST00000557005	NINJ2	Q9NZG7	142 aa		5.26	□□□□□ -1.57
SYNE2-223	ENST00000557005	SSX2IP	Q9Y2D8	614 aa		5.26	□□□□□ -1.57
SYNE2-223	ENST00000557005	MTO1	Q9Y2Z2	717 aa	Known RBP	5.26	□□□□□ -1.57
SYNE2-223	ENST00000557005	AFF2	P51816	1311 aa		5.26	□□□□□ -1.57
SYNE2-223	ENST00000557005		A0A0A6YYK5	440 aa	Predicted RBP	5.26	□□□□□ -1.57
SYNE2-223	ENST00000557005	IPO5	O00410	1097 aa	Known RBP	5.26	□□□□□ -1.57
SYNE2-223	ENST00000557005	CES2	O00748	559 aa		5.26	□□□□□ -1.57
SYNE2-223	ENST00000557005	XPO1	O14980	1071 aa	Known RBP	5.26	□□□□□ -1.57
SYNE2-223	ENST00000557005	PSAP	P07602	524 aa		5.26	□□□□□ -1.57
SYNE2-223	ENST00000557005	KRT16	P08779	473 aa		5.26	□□□□□ -1.57
SYNE2-223	ENST00000557005	NPEPPS	P55786	919 aa		5.26	□□□□□ -1.57
SYNE2-223	ENST00000557005	EIF3E	P60228	445 aa	Known RBP	5.26	□□□□□ -1.57
SYNE2-223	ENST00000557005	PSMC6	P62333	389 aa		5.26	□□□□□ -1.57
SYNE2-223	ENST00000557005	SLC12A1	Q13621	1099 aa		5.26	□□□□□ -1.57
SYNE2-223	ENST00000557005	PRPSAP1	Q14558	356 aa		5.26	□□□□□ -1.57
SYNE2-223	ENST00000557005	EPHA7	Q15375	998 aa		5.26	□□□□□ -1.57
SYNE2-223	ENST00000557005	CNGA2	Q16280	664 aa		5.26	□□□□□ -1.57
SYNE2-223	ENST00000557005	KIF19	Q2TAC6	998 aa		5.26	□□□□□ -1.57
SYNE2-223	ENST00000557005	TMEM119	Q4V9L6	283 aa		5.26	□□□□□ -1.57
SYNE2-223	ENST00000557005	NT5DC3	Q86UY8	548 aa		5.26	□□□□□ -1.57
SYNE2-223	ENST00000557005	CCDC33	Q8N5R6	958 aa		5.26	□□□□□ -1.57
SYNE2-223	ENST00000557005	ATP8B4	Q8TF62	1192 aa		5.26	□□□□□ -1.57
SYNE2-223	ENST00000557005	OSBPL8	Q9BZF1	889 aa		5.26	□□□□□ -1.57
SYNE2-223	ENST00000557005	KLC2	Q9H0B6	622 aa		5.26	□□□□□ -1.57
SYNE2-223	ENST00000557005	METTL5	Q9NRN9	209 aa	Known RBP	5.26	□□□□□ -1.57
SYNE2-223	ENST00000557005	ADA2	Q9NZK5	511 aa		5.26	□□□□□ -1.57
SYNE2-223	ENST00000557005	GINS2	Q9Y248	185 aa		5.26	□□□□□ -1.57
SYNE2-223	ENST00000557005	C1orf167	Q5SNV9	1468 aa		5.26	□□□□□ -1.57
SYNE2-223	ENST00000557005	PABPN1L	A6NDY0	278 aa	Known RBP	5.26	□□□□□ -1.57
SYNE2-223	ENST00000557005	ADAMTS3	O15072	1205 aa		5.26	□□□□□ -1.57
SYNE2-223	ENST00000557005	GH2	P01242	217 aa		5.26	□□□□□ -1.57
SYNE2-223	ENST00000557005	TCN1	P20061	433 aa	Predicted RBP	5.26	□□□□□ -1.57
SYNE2-223	ENST00000557005	FGFR2	P21802	821 aa		5.26	□□□□□ -1.57
SYNE2-223	ENST00000557005	RFX1	P22670	979 aa		5.26	□□□□□ -1.57
SYNE2-223	ENST00000557005	SERPINB3	P29508	390 aa		5.26	□□□□□ -1.57
SYNE2-223	ENST00000557005	EEF1D	P29692	281 aa	Known RBP	5.26	□□□□□ -1.57
SYNE2-223	ENST00000557005	SLC8A3	P57103	927 aa		5.26	□□□□□ -1.57
SYNE2-223	ENST00000557005	AP1B1	Q10567	949 aa		5.26	□□□□□ -1.57
SYNE2-223	ENST00000557005	HABP4	Q5JVS0	413 aa	Known RBP	5.26	□□□□□ -1.57
SYNE2-223	ENST00000557005	RCSD1	Q6JBY9	416 aa		5.26	□□□□□ -1.57
SYNE2-223	ENST00000557005	KCNV1	Q6PIU1	500 aa		5.26	□□□□□ -1.57
SYNE2-223	ENST00000557005	PDIK1L	Q8N165	341 aa		5.26	□□□□□ -1.57
SYNE2-223	ENST00000557005	FAM111A	Q96PZ2	611 aa		5.26	□□□□□ -1.57
SYNE2-223	ENST00000557005	SENP7	Q9BQF6	1050 aa		5.26	□□□□□ -1.57
SYNE2-223	ENST00000557005	RANBP17	Q9H2T7	1088 aa	Known RBP	5.26	□□□□□ -1.57
SYNE2-223	ENST00000557005	SLC38A10	Q9HBR0	1119 aa		5.26	□□□□□ -1.57
SYNE2-223	ENST00000557005	GTSE1	Q9NYZ3	720 aa		5.26	□□□□□ -1.57
SYNE2-223	ENST00000557005	TTC36	A6NLP5	189 aa		5.26	□□□□□ -1.57
SYNE2-223	ENST00000557005	FOXN3	O00409	490 aa	Predicted RBP	5.26	□□□□□ -1.57
SYNE2-223	ENST00000557005	EIF3D	O15371	548 aa	Known RBP eCLIP	5.26	□□□□□ -1.57
SYNE2-223	ENST00000557005	TTC4	O95801	387 aa		5.26	□□□□□ -1.57
SYNE2-223	ENST00000557005	GSTA2	P09210	222 aa		5.26	□□□□□ -1.57
SYNE2-223	ENST00000557005	MYL2	P10916	166 aa		5.26	□□□□□ -1.57
SYNE2-223	ENST00000557005	KRT3	P12035	628 aa		5.26	□□□□□ -1.57
SYNE2-223	ENST00000557005	VEGFA	P15692	232 aa	Predicted RBP	5.26	□□□□□ -1.57
SYNE2-223	ENST00000557005	FIGN	Q5HY92	759 aa		5.26	□□□□□ -1.57
SYNE2-223	ENST00000557005	PLA2G4F	Q68DD2	849 aa		5.26	□□□□□ -1.57
SYNE2-223	ENST00000557005	KRT39	Q6A163	491 aa		5.26	□□□□□ -1.57
SYNE2-223	ENST00000557005	RINL	Q6ZS11	566 aa		5.26	□□□□□ -1.57
SYNE2-223	ENST00000557005	ZBTB8OS	Q8IWT0	167 aa		5.26	□□□□□ -1.57
SYNE2-223	ENST00000557005	FAM71D	Q8N9W8	422 aa		5.26	□□□□□ -1.57
SYNE2-223	ENST00000557005	LINC00116	Q8NCU8	138 aa		5.26	□□□□□ -1.57
SYNE2-223	ENST00000557005	ZNF668	Q96K58	619 aa	Predicted RBP	5.26	□□□□□ -1.57
SYNE2-223	ENST00000557005	PWWP2A	Q96N64	755 aa		5.26	□□□□□ -1.57
SYNE2-223	ENST00000557005	KIAA1683	Q9H0B3	1180 aa		5.26	□□□□□ -1.57
SYNE2-223	ENST00000557005	XAB2	Q9HCS7	855 aa	Known RBP	5.26	□□□□□ -1.57
SYNE2-223	ENST00000557005	TOPORS	Q9NS56	1045 aa	Predicted RBP	5.26	□□□□□ -1.57
SYNE2-223	ENST00000557005	NAALADL1	Q9UQQ1	740 aa		5.26	□□□□□ -1.57
SYNE2-223	ENST00000557005	NUB1	Q9Y5A7	615 aa		5.26	□□□□□ -1.57
SYNE2-223	ENST00000557005	LMTK3	Q96Q04	1460 aa		5.25	□□□□□ -1.57
SYNE2-223	ENST00000557005	GSTA4	O15217	222 aa		5.25	□□□□□ -1.57
SYNE2-223	ENST00000557005	CALB1	P05937	261 aa		5.25	□□□□□ -1.57
SYNE2-223	ENST00000557005	ETS1	P14921	441 aa		5.25	□□□□□ -1.57
SYNE2-223	ENST00000557005	CYP11B2	P19099	503 aa		5.25	□□□□□ -1.57
SYNE2-223	ENST00000557005	POLR2B	P30876	1174 aa	Known RBP	5.25	□□□□□ -1.57
SYNE2-223	ENST00000557005	GPC3	P51654	580 aa		5.25	□□□□□ -1.57
SYNE2-223	ENST00000557005	KPNB1	Q14974	876 aa	Known RBP	5.25	□□□□□ -1.57
SYNE2-223	ENST00000557005	RPS6KA2	Q15349	733 aa		5.25	□□□□□ -1.57
SYNE2-223	ENST00000557005	PDCD2	Q16342	344 aa	Predicted RBP	5.25	□□□□□ -1.57
SYNE2-223	ENST00000557005	FSCB	Q5H9T9	825 aa		5.25	□□□□□ -1.57
SYNE2-223	ENST00000557005	LRRC8E	Q6NSJ5	796 aa		5.25	□□□□□ -1.57
SYNE2-223	ENST00000557005	FBXO36	Q8NEA4	188 aa		5.25	□□□□□ -1.57
SYNE2-223	ENST00000557005	TMA16	Q96EY4	203 aa	Known RBP	5.25	□□□□□ -1.57

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