RNA–Protein interactions for RNA: ENST00000556768.5

SCFD1-222, Transcript of sec1 family domain containing 1, humanhuman

TSL 1 (best)

Gene SCFD1, Length 1,829 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-222ENST00000556768 LIG4P49917 911 aa8.01□□□□□ -1.13
SCFD1-222ENST00000556768 CEBPZQ03701 1054 aaKnown RBP8.01□□□□□ -1.13
SCFD1-222ENST00000556768 LIN9Q5TKA1 542 aa8.01□□□□□ -1.13
SCFD1-222ENST00000556768 EEF1DP3Q658K8 133 aa8.01□□□□□ -1.13
SCFD1-222ENST00000556768 GPR149Q86SP6 731 aa8.01□□□□□ -1.13
SCFD1-222ENST00000556768 HSCBQ8IWL3 235 aa8.01□□□□□ -1.13
SCFD1-222ENST00000556768 DAW1Q8N136 415 aa8.01□□□□□ -1.13
SCFD1-222ENST00000556768 TMEM161BQ8NDZ6 487 aa8.01□□□□□ -1.13
SCFD1-222ENST00000556768 LARP4BQ92615 738 aaKnown RBP8.01□□□□□ -1.13
SCFD1-222ENST00000556768 RABGGTAQ92696 567 aa8.01□□□□□ -1.13
SCFD1-222ENST00000556768 PNMA5Q96PV4 448 aa8.01□□□□□ -1.13
SCFD1-222ENST00000556768 GPR62Q9BZJ7 368 aa8.01□□□□□ -1.13
SCFD1-222ENST00000556768 POMKQ9H5K3 350 aa8.01□□□□□ -1.13
SCFD1-222ENST00000556768 MAN1C1Q9NR34 630 aa8.01□□□□□ -1.13
SCFD1-222ENST00000556768 FKBPLQ9UIM3 349 aa8.01□□□□□ -1.13
SCFD1-222ENST00000556768 NUB1Q9Y5A7 615 aa8.01□□□□□ -1.13
SCFD1-222ENST00000556768 TCF20Q9UGU0 1960 aaKnown RBP8.01□□□□□ -1.13
SCFD1-222ENST00000556768 SMIM28A0A1B0GU29 152 aa8□□□□□ -1.13
SCFD1-222ENST00000556768 SOWAHDA6NJG2 315 aa8□□□□□ -1.13
SCFD1-222ENST00000556768 PTGESO14684 152 aa8□□□□□ -1.13
SCFD1-222ENST00000556768 HNRNPDLO14979 420 aaKnown RBP8□□□□□ -1.13
SCFD1-222ENST00000556768 STX6O43752 255 aa8□□□□□ -1.13
SCFD1-222ENST00000556768 MAPTP10636 758 aaKnown RBP8□□□□□ -1.13
SCFD1-222ENST00000556768 PLCG1P19174 1290 aa8□□□□□ -1.13
SCFD1-222ENST00000556768 MARCKSP29966 332 aaPredicted RBP8□□□□□ -1.13
SCFD1-222ENST00000556768 RPL9P32969 192 aaKnown RBP8□□□□□ -1.13
SCFD1-222ENST00000556768 MTMR3Q13615 1198 aa8□□□□□ -1.13
SCFD1-222ENST00000556768 NOLC1Q14978 699 aaKnown RBP eCLIP8□□□□□ -1.13
SCFD1-222ENST00000556768 KARSQ15046 597 aaKnown RBP8□□□□□ -1.13
SCFD1-222ENST00000556768 TMEM119Q4V9L6 283 aa8□□□□□ -1.13
SCFD1-222ENST00000556768 GLRA4Q5JXX5 417 aa8□□□□□ -1.13
SCFD1-222ENST00000556768 RRAGBQ5VZM2 374 aa8□□□□□ -1.13
SCFD1-222ENST00000556768 CCDC73Q6ZRK6 1079 aa8□□□□□ -1.13
SCFD1-222ENST00000556768 TRIM67Q6ZTA4 783 aa8□□□□□ -1.13
SCFD1-222ENST00000556768 SV2BQ7L1I2 683 aa8□□□□□ -1.13
SCFD1-222ENST00000556768 HAUS6Q7Z4H7 955 aa8□□□□□ -1.13
SCFD1-222ENST00000556768 SUGP1Q8IWZ8 645 aaKnown RBP8□□□□□ -1.13
SCFD1-222ENST00000556768 UBALD2Q8IYN6 164 aa8□□□□□ -1.13
SCFD1-222ENST00000556768 DEPDC4Q8N2C3 294 aa8□□□□□ -1.13
SCFD1-222ENST00000556768 CMASQ8NFW8 434 aaPredicted RBP8□□□□□ -1.13
SCFD1-222ENST00000556768 HASPINQ8TF76 798 aa8□□□□□ -1.13
SCFD1-222ENST00000556768 RAD54LQ92698 747 aa8□□□□□ -1.13
SCFD1-222ENST00000556768 CCSER1Q9C0I3 900 aa8□□□□□ -1.13
SCFD1-222ENST00000556768 CDT1Q9H211 546 aa8□□□□□ -1.13
SCFD1-222ENST00000556768 PTPRHQ9HD43 1115 aa8□□□□□ -1.13
SCFD1-222ENST00000556768 ZDHHC7Q9NXF8 308 aa8□□□□□ -1.13
SCFD1-222ENST00000556768 SRPRBQ9Y5M8 271 aaKnown RBP8□□□□□ -1.13
SCFD1-222ENST00000556768 CLIC4Q9Y696 253 aa8□□□□□ -1.13
SCFD1-222ENST00000556768 F8W810 466 aa7.99□□□□□ -1.13
SCFD1-222ENST00000556768 TGM5O43548 720 aa7.99□□□□□ -1.13
SCFD1-222ENST00000556768 XPOTO43592 962 aaKnown RBP7.99□□□□□ -1.13
SCFD1-222ENST00000556768 KIF4AO95239 1232 aa7.99□□□□□ -1.13
SCFD1-222ENST00000556768 CLTAP09496 248 aa7.99□□□□□ -1.13
SCFD1-222ENST00000556768 WEE2P0C1S8 567 aa7.99□□□□□ -1.13
SCFD1-222ENST00000556768 SPATA31D3P0C874 917 aa7.99□□□□□ -1.13
SCFD1-222ENST00000556768 CLCNKBP51801 687 aa7.99□□□□□ -1.13
SCFD1-222ENST00000556768 ZXDAP98168 799 aa7.99□□□□□ -1.13
SCFD1-222ENST00000556768 MAPK7Q13164 816 aa7.99□□□□□ -1.13
SCFD1-222ENST00000556768 PSMD5Q16401 504 aa7.99□□□□□ -1.13
SCFD1-222ENST00000556768 PTPN21Q16825 1174 aa7.99□□□□□ -1.13
SCFD1-222ENST00000556768 UPP1Q16831 310 aa7.99□□□□□ -1.13
SCFD1-222ENST00000556768 ARSHQ5FYA8 562 aa7.99□□□□□ -1.13
SCFD1-222ENST00000556768 PDZRN4Q6ZMN7 1036 aaPredicted RBP7.99□□□□□ -1.13
SCFD1-222ENST00000556768 SPATA31D4Q6ZUB0 917 aa7.99□□□□□ -1.13
SCFD1-222ENST00000556768 ANKS3Q6ZW76 656 aa7.99□□□□□ -1.13
SCFD1-222ENST00000556768 GLYCTKQ8IVS8 523 aa7.99□□□□□ -1.13
SCFD1-222ENST00000556768 RNF168Q8IYW5 571 aaPredicted RBP7.99□□□□□ -1.13
SCFD1-222ENST00000556768 KREMEN2Q8NCW0 462 aa7.99□□□□□ -1.13
SCFD1-222ENST00000556768 PIK3R5Q8WYR1 880 aa7.99□□□□□ -1.13
SCFD1-222ENST00000556768 FAM122AQ96E09 287 aa7.99□□□□□ -1.13
SCFD1-222ENST00000556768 B3GALT6Q96L58 329 aa7.99□□□□□ -1.13
SCFD1-222ENST00000556768 ZNF396Q96N95 335 aaPredicted RBP7.99□□□□□ -1.13
SCFD1-222ENST00000556768 PPP1R10Q96QC0 940 aaKnown RBP7.99□□□□□ -1.13
SCFD1-222ENST00000556768 REEP2Q9BRK0 252 aa7.99□□□□□ -1.13
SCFD1-222ENST00000556768 PAAF1Q9BRP4 392 aa7.99□□□□□ -1.13
SCFD1-222ENST00000556768 PLEKHA5Q9HAU0 1116 aa7.99□□□□□ -1.13
SCFD1-222ENST00000556768 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP7.99□□□□□ -1.13
SCFD1-222ENST00000556768 STK17AQ9UEE5 414 aa7.99□□□□□ -1.13
SCFD1-222ENST00000556768 SORCS3Q9UPU3 1222 aa7.99□□□□□ -1.13
SCFD1-222ENST00000556768 NLRC5Q86WI3 1866 aa7.99□□□□□ -1.13
SCFD1-222ENST00000556768 NPHP3-ACAD11A0A0J9YXS1 232 aa7.99□□□□□ -1.13
SCFD1-222ENST00000556768 TMEM189-UBE2V1I3L0A0 370 aa7.99□□□□□ -1.13
SCFD1-222ENST00000556768 K7ENM7 598 aa7.99□□□□□ -1.13
SCFD1-222ENST00000556768 XYLBO75191 536 aa7.99□□□□□ -1.13
SCFD1-222ENST00000556768 EFEMP2O95967 443 aa7.99□□□□□ -1.13
SCFD1-222ENST00000556768 KCNE1P15382 129 aa7.99□□□□□ -1.13
SCFD1-222ENST00000556768 PROZP22891 400 aa7.99□□□□□ -1.13
SCFD1-222ENST00000556768 ELF1P32519 619 aa7.99□□□□□ -1.13
SCFD1-222ENST00000556768 NCKAP1LP55160 1127 aa7.99□□□□□ -1.13
SCFD1-222ENST00000556768 MCL1Q07820 350 aa7.99□□□□□ -1.13
SCFD1-222ENST00000556768 SIGLEC14Q08ET2 396 aa7.99□□□□□ -1.13
SCFD1-222ENST00000556768 STK38Q15208 465 aa7.99□□□□□ -1.13
SCFD1-222ENST00000556768 RTP2Q5QGT7 225 aa7.99□□□□□ -1.13
SCFD1-222ENST00000556768 SLFN12LQ6IEE8 588 aa7.99□□□□□ -1.13
SCFD1-222ENST00000556768 ALKAL1Q6UXT8 129 aa7.99□□□□□ -1.13
SCFD1-222ENST00000556768 RTL10Q7L3V2 364 aa7.99□□□□□ -1.13
SCFD1-222ENST00000556768 ZDHHC14Q8IZN3 488 aa7.99□□□□□ -1.13
SCFD1-222ENST00000556768 SMG7Q92540 1137 aaKnown RBP7.99□□□□□ -1.13
SCFD1-222ENST00000556768 SNX21Q969T3 373 aa7.99□□□□□ -1.13
SCFD1-222ENST00000556768 MRRFQ96E11 262 aaKnown RBP7.99□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 95.3 ms