RNA–Protein interactions for RNA: ENST00000555995.1

CCDC88C-210, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 689 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-210ENST00000555995 LDHAP00338 332 aaKnown RBP22.45■■□□□ 1.18
CCDC88C-210ENST00000555995 MYL1P05976 194 aa22.45■■□□□ 1.18
CCDC88C-210ENST00000555995 ADRB2P07550 413 aa22.45■■□□□ 1.18
CCDC88C-210ENST00000555995 GARTP22102 1010 aa22.45■■□□□ 1.18
CCDC88C-210ENST00000555995 PAX3P23760 479 aa22.45■■□□□ 1.18
CCDC88C-210ENST00000555995 SOX4Q06945 474 aaPredicted RBP22.45■■□□□ 1.18
CCDC88C-210ENST00000555995 RTP2Q5QGT7 225 aa22.45■■□□□ 1.18
CCDC88C-210ENST00000555995 CYP26C1Q6V0L0 522 aa22.45■■□□□ 1.18
CCDC88C-210ENST00000555995 ANKS3Q6ZW76 656 aa22.45■■□□□ 1.18
CCDC88C-210ENST00000555995 UNC13DQ70J99 1090 aa22.45■■□□□ 1.18
CCDC88C-210ENST00000555995 CEP57Q86XR8 500 aa22.45■■□□□ 1.18
CCDC88C-210ENST00000555995 STAMQ92783 540 aa22.45■■□□□ 1.18
CCDC88C-210ENST00000555995 ASB7Q9H672 318 aa22.45■■□□□ 1.18
CCDC88C-210ENST00000555995 UBE4BO95155 1302 aa22.45■■□□□ 1.18
CCDC88C-210ENST00000555995 ANKRD63C9JTQ0 380 aa22.44■■□□□ 1.18
CCDC88C-210ENST00000555995 SYN3O14994 580 aa22.44■■□□□ 1.18
CCDC88C-210ENST00000555995 SLFN14P0C7P3 912 aa22.44■■□□□ 1.18
CCDC88C-210ENST00000555995 ANK1P16157 1881 aa22.44■■□□□ 1.18
CCDC88C-210ENST00000555995 FGFR3P22607 806 aa22.44■■□□□ 1.18
CCDC88C-210ENST00000555995 LRPAP1P30533 357 aa22.44■■□□□ 1.18
CCDC88C-210ENST00000555995 TNFSF9P41273 254 aa22.44■■□□□ 1.18
CCDC88C-210ENST00000555995 ENOX2Q16206 610 aaKnown RBP22.44■■□□□ 1.18
CCDC88C-210ENST00000555995 C15orf39Q6ZRI6 1047 aa22.44■■□□□ 1.18
CCDC88C-210ENST00000555995 BEST2Q8NFU1 509 aa22.44■■□□□ 1.18
CCDC88C-210ENST00000555995 CMASQ8NFW8 434 aaPredicted RBP22.44■■□□□ 1.18
CCDC88C-210ENST00000555995 MAN1C1Q9NR34 630 aa22.44■■□□□ 1.18
CCDC88C-210ENST00000555995 BDP1A6H8Y1 2624 aa22.43■■□□□ 1.18
CCDC88C-210ENST00000555995 PVALEFA0A1B0GWK0 134 aa22.43■■□□□ 1.18
CCDC88C-210ENST00000555995 IL18RAPO95256 599 aa22.43■■□□□ 1.18
CCDC88C-210ENST00000555995 MYBP10242 640 aa22.43■■□□□ 1.18
CCDC88C-210ENST00000555995 FAM26FQ5R3K3 315 aa22.43■■□□□ 1.18
CCDC88C-210ENST00000555995 ATAT1Q5SQI0 421 aa22.43■■□□□ 1.18
CCDC88C-210ENST00000555995 RARS2Q5T160 578 aaKnown RBP22.43■■□□□ 1.18
CCDC88C-210ENST00000555995 NT5DC4Q86YG4 428 aa22.43■■□□□ 1.18
CCDC88C-210ENST00000555995 CCDC34Q96HJ3 373 aa22.43■■□□□ 1.18
CCDC88C-210ENST00000555995 B3GALT6Q96L58 329 aa22.43■■□□□ 1.18
CCDC88C-210ENST00000555995 RHOBTB2Q9BYZ6 727 aa22.43■■□□□ 1.18
CCDC88C-210ENST00000555995 C2CD2Q9Y426 696 aa22.43■■□□□ 1.18
CCDC88C-210ENST00000555995 NR2E1Q9Y466 385 aa22.43■■□□□ 1.18
CCDC88C-210ENST00000555995 A0A1W2PQ27 194 aa22.42■■□□□ 1.18
CCDC88C-210ENST00000555995 A0A1W2PQ64 194 aa22.42■■□□□ 1.18
CCDC88C-210ENST00000555995 A0A1W2PQD8 194 aa22.42■■□□□ 1.18
CCDC88C-210ENST00000555995 LACTBL1A8MY62 500 aa22.42■■□□□ 1.18
CCDC88C-210ENST00000555995 MEFVO15553 781 aaPredicted RBP22.42■■□□□ 1.18
CCDC88C-210ENST00000555995 PFKFB1P16118 471 aa22.42■■□□□ 1.18
CCDC88C-210ENST00000555995 MCM4P33991 863 aa22.42■■□□□ 1.18
CCDC88C-210ENST00000555995 LNX1Q8TBB1 728 aaPredicted RBP22.42■■□□□ 1.18
CCDC88C-210ENST00000555995 C18orf25Q96B23 403 aaPredicted RBP22.42■■□□□ 1.18
CCDC88C-210ENST00000555995 MTRRQ9UBK8 725 aa22.42■■□□□ 1.18
CCDC88C-210ENST00000555995 BACE2Q9Y5Z0 518 aa22.42■■□□□ 1.18
CCDC88C-210ENST00000555995 DENND4AQ7Z401 1863 aa22.41■■□□□ 1.18
CCDC88C-210ENST00000555995 ARHGEF37A1IGU5 675 aa22.41■■□□□ 1.18
CCDC88C-210ENST00000555995 H7C4K7 107 aa22.41■■□□□ 1.18
CCDC88C-210ENST00000555995 ALADP13716 330 aa22.41■■□□□ 1.18
CCDC88C-210ENST00000555995 ACOT2P49753 483 aa22.41■■□□□ 1.18
CCDC88C-210ENST00000555995 CASP5P51878 434 aa22.41■■□□□ 1.18
CCDC88C-210ENST00000555995 TMEM132DQ14C87 1099 aa22.41■■□□□ 1.18
CCDC88C-210ENST00000555995 ZBTB6Q15916 424 aa22.41■■□□□ 1.18
CCDC88C-210ENST00000555995 PRSS55Q6UWB4 352 aaPredicted RBP22.41■■□□□ 1.18
CCDC88C-210ENST00000555995 C3orf58Q8NDZ4 430 aa22.41■■□□□ 1.18
CCDC88C-210ENST00000555995 APPL2Q8NEU8 664 aa22.41■■□□□ 1.18
CCDC88C-210ENST00000555995 FAM212AQ96EL1 285 aa22.41■■□□□ 1.18
CCDC88C-210ENST00000555995 SUSD3Q96L08 255 aa22.41■■□□□ 1.18
CCDC88C-210ENST00000555995 APOL5Q9BWW9 433 aa22.41■■□□□ 1.18
CCDC88C-210ENST00000555995 C1QTNF1Q9BXJ1 281 aa22.41■■□□□ 1.18
CCDC88C-210ENST00000555995 ZDHHC7Q9NXF8 308 aa22.41■■□□□ 1.18
CCDC88C-210ENST00000555995 TUBGCP4Q9UGJ1 667 aa22.41■■□□□ 1.18
CCDC88C-210ENST00000555995 LOC730098B7Z3J9 87 aa22.4■■□□□ 1.18
CCDC88C-210ENST00000555995 TGM5O43548 720 aa22.4■■□□□ 1.18
CCDC88C-210ENST00000555995 SYKP43405 635 aa22.4■■□□□ 1.18
CCDC88C-210ENST00000555995 SNRPFP62306 86 aaKnown RBP22.4■■□□□ 1.18
CCDC88C-210ENST00000555995 ZBTB41Q5SVQ8 909 aa22.4■■□□□ 1.18
CCDC88C-210ENST00000555995 LIN9Q5TKA1 542 aa22.4■■□□□ 1.18
CCDC88C-210ENST00000555995 SPATA1Q5VX52 437 aa22.4■■□□□ 1.18
CCDC88C-210ENST00000555995 ARMCX5Q6P1M9 558 aa22.4■■□□□ 1.18
CCDC88C-210ENST00000555995 RTL10Q7L3V2 364 aa22.4■■□□□ 1.18
CCDC88C-210ENST00000555995 GPR149Q86SP6 731 aa22.4■■□□□ 1.18
CCDC88C-210ENST00000555995 OXCT2Q9BYC2 517 aaPredicted RBP22.4■■□□□ 1.18
CCDC88C-210ENST00000555995 SERTAD1Q9UHV2 236 aa22.4■■□□□ 1.18
CCDC88C-210ENST00000555995 HPSEQ9Y251 543 aa22.4■■□□□ 1.18
CCDC88C-210ENST00000555995 FAM237AA0A1B0GTK4 181 aa22.39■■□□□ 1.17
CCDC88C-210ENST00000555995 A0A1B0GVL5 298 aa22.39■■□□□ 1.17
CCDC88C-210ENST00000555995 TISP43B9A030 160 aa22.39■■□□□ 1.17
CCDC88C-210ENST00000555995 ACTN4O43707 911 aaKnown RBP22.39■■□□□ 1.17
CCDC88C-210ENST00000555995 PRPF6O94906 941 aaKnown RBP22.39■■□□□ 1.17
CCDC88C-210ENST00000555995 TKTP29401 623 aaKnown RBP22.39■■□□□ 1.17
CCDC88C-210ENST00000555995 ADSSP30520 456 aa22.39■■□□□ 1.17
CCDC88C-210ENST00000555995 AFMP43652 599 aa22.39■■□□□ 1.17
CCDC88C-210ENST00000555995 BRCC3P46736 316 aa22.39■■□□□ 1.17
CCDC88C-210ENST00000555995 KCNA1Q09470 495 aa22.39■■□□□ 1.17
CCDC88C-210ENST00000555995 JADE1Q6IE81 842 aa22.39■■□□□ 1.17
CCDC88C-210ENST00000555995 CD300LGQ6UXG3 332 aa22.39■■□□□ 1.17
CCDC88C-210ENST00000555995 TMC5Q6UXY8 1006 aa22.39■■□□□ 1.17
CCDC88C-210ENST00000555995 PALB2Q86YC2 1186 aa22.39■■□□□ 1.17
CCDC88C-210ENST00000555995 BRSK2Q8IWQ3 736 aa22.39■■□□□ 1.17
CCDC88C-210ENST00000555995 KREMEN2Q8NCW0 462 aa22.39■■□□□ 1.17
CCDC88C-210ENST00000555995 CCDC47Q96A33 483 aaKnown RBP22.39■■□□□ 1.17
CCDC88C-210ENST00000555995 CLSTN3Q9BQT9 956 aa22.39■■□□□ 1.17
CCDC88C-210ENST00000555995 CGNQ9P2M7 1197 aaKnown RBP22.39■■□□□ 1.17
CCDC88C-210ENST00000555995 FBXW11Q9UKB1 542 aa22.39■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms