RNA–Protein interactions for RNA: ENST00000555213.1

SHMT2-218, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 611 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-218ENST00000555213 BORCS6Q96GS4 357 aa11.81□□□□□ -0.52
SHMT2-218ENST00000555213 FBXL18Q96ME1 805 aa11.81□□□□□ -0.52
SHMT2-218ENST00000555213 PPP1R10Q96QC0 940 aaKnown RBP11.81□□□□□ -0.52
SHMT2-218ENST00000555213 FNBP1Q96RU3 617 aa11.81□□□□□ -0.52
SHMT2-218ENST00000555213 COLEC11Q9BWP8 271 aa11.81□□□□□ -0.52
SHMT2-218ENST00000555213 CWH43Q9H720 699 aa11.81□□□□□ -0.52
SHMT2-218ENST00000555213 NRDE2Q9H7Z3 1164 aa11.81□□□□□ -0.52
SHMT2-218ENST00000555213 CERS4Q9HA82 394 aa11.81□□□□□ -0.52
SHMT2-218ENST00000555213 SPG21Q9NZD8 308 aa11.81□□□□□ -0.52
SHMT2-218ENST00000555213 HCSTQ9UBK5 93 aa11.81□□□□□ -0.52
SHMT2-218ENST00000555213 PLAGL2Q9UPG8 496 aa11.81□□□□□ -0.52
SHMT2-218ENST00000555213 FAN1Q9Y2M0 1017 aa11.81□□□□□ -0.52
SHMT2-218ENST00000555213 PRG3Q9Y2Y8 225 aaPredicted RBP11.81□□□□□ -0.52
SHMT2-218ENST00000555213 RANBP2P49792 3224 aaKnown RBP11.81□□□□□ -0.52
SHMT2-218ENST00000555213 FNDC1Q4ZHG4 1894 aaPredicted RBP11.8□□□□□ -0.52
SHMT2-218ENST00000555213 CASTOR2A6NHX0 329 aa11.8□□□□□ -0.52
SHMT2-218ENST00000555213 DDHD2O94830 711 aa11.8□□□□□ -0.52
SHMT2-218ENST00000555213 ALDH2P05091 517 aa11.8□□□□□ -0.52
SHMT2-218ENST00000555213 NFICP08651 508 aa11.8□□□□□ -0.52
SHMT2-218ENST00000555213 EPB41P11171 864 aaKnown RBP11.8□□□□□ -0.52
SHMT2-218ENST00000555213 KRT13P13646 458 aa11.8□□□□□ -0.52
SHMT2-218ENST00000555213 CYP3A5P20815 502 aa11.8□□□□□ -0.52
SHMT2-218ENST00000555213 CDK11BP21127 795 aaKnown RBP11.8□□□□□ -0.52
SHMT2-218ENST00000555213 EEF1GP26641 437 aaKnown RBP11.8□□□□□ -0.52
SHMT2-218ENST00000555213 SLC11A1P49279 550 aa11.8□□□□□ -0.52
SHMT2-218ENST00000555213 COPB1P53618 953 aaKnown RBP11.8□□□□□ -0.52
SHMT2-218ENST00000555213 MARSP56192 900 aaKnown RBP11.8□□□□□ -0.52
SHMT2-218ENST00000555213 FKBP3Q00688 224 aaKnown RBP11.8□□□□□ -0.52
SHMT2-218ENST00000555213 UBE3AQ05086 875 aa11.8□□□□□ -0.52
SHMT2-218ENST00000555213 ADAM9Q13443 819 aa11.8□□□□□ -0.52
SHMT2-218ENST00000555213 BMS1Q14692 1282 aaKnown RBP11.8□□□□□ -0.52
SHMT2-218ENST00000555213 PTPROQ16827 1216 aa11.8□□□□□ -0.52
SHMT2-218ENST00000555213 MIIPQ5JXC2 388 aa11.8□□□□□ -0.52
SHMT2-218ENST00000555213 CRELD2Q6UXH1 353 aaPredicted RBP11.8□□□□□ -0.52
SHMT2-218ENST00000555213 ARHGAP30Q7Z6I6 1101 aaPredicted RBP11.8□□□□□ -0.52
SHMT2-218ENST00000555213 COLGALT2Q8IYK4 626 aa11.8□□□□□ -0.52
SHMT2-218ENST00000555213 SLC39A11Q8N1S5 342 aa11.8□□□□□ -0.52
SHMT2-218ENST00000555213 DEFB123Q8N688 67 aa11.8□□□□□ -0.52
SHMT2-218ENST00000555213 CACTINQ8WUQ7 758 aaKnown RBP11.8□□□□□ -0.52
SHMT2-218ENST00000555213 GAS2L1Q99501 681 aaPredicted RBP11.8□□□□□ -0.52
SHMT2-218ENST00000555213 TTYH1Q9H313 450 aaPredicted RBP11.8□□□□□ -0.52
SHMT2-218ENST00000555213 DNAJB4Q9UDY4 337 aa11.8□□□□□ -0.52
SHMT2-218ENST00000555213 PUF60Q9UHX1 559 aaKnown RBP11.8□□□□□ -0.52
SHMT2-218ENST00000555213 R3HCC1Q9Y3T6 440 aaKnown RBP11.8□□□□□ -0.52
SHMT2-218ENST00000555213 RALGAPA2Q2PPJ7 1873 aa11.8□□□□□ -0.52
SHMT2-218ENST00000555213 H3BNC9 293 aa11.79□□□□□ -0.52
SHMT2-218ENST00000555213 MAPK13O15264 365 aa11.79□□□□□ -0.52
SHMT2-218ENST00000555213 SLC16A3O15427 465 aaKnown RBP11.79□□□□□ -0.52
SHMT2-218ENST00000555213 FGF18O76093 207 aa11.79□□□□□ -0.52
SHMT2-218ENST00000555213 FGFR1OPO95684 399 aaKnown RBP11.79□□□□□ -0.52
SHMT2-218ENST00000555213 SERPINC1P01008 464 aa11.79□□□□□ -0.52
SHMT2-218ENST00000555213 TNNC2P02585 160 aa11.79□□□□□ -0.52
SHMT2-218ENST00000555213 ADRB2P07550 413 aa11.79□□□□□ -0.52
SHMT2-218ENST00000555213 GALTP07902 379 aa11.79□□□□□ -0.52
SHMT2-218ENST00000555213 TMEM191BP0C7N4 346 aa11.79□□□□□ -0.52
SHMT2-218ENST00000555213 LINC00271P0C7V0 271 aa11.79□□□□□ -0.52
SHMT2-218ENST00000555213 RPL9P32969 192 aaKnown RBP11.79□□□□□ -0.52
SHMT2-218ENST00000555213 PSMC2P35998 433 aaKnown RBP11.79□□□□□ -0.52
SHMT2-218ENST00000555213 PBX3P40426 434 aa11.79□□□□□ -0.52
SHMT2-218ENST00000555213 CASP4P49662 377 aa11.79□□□□□ -0.52
SHMT2-218ENST00000555213 TFAMQ00059 246 aaKnown RBP11.79□□□□□ -0.52
SHMT2-218ENST00000555213 SPAG1Q07617 926 aa11.79□□□□□ -0.52
SHMT2-218ENST00000555213 CYP24A1Q07973 514 aa11.79□□□□□ -0.52
SHMT2-218ENST00000555213 TBX2Q13207 712 aaPredicted RBP11.79□□□□□ -0.52
SHMT2-218ENST00000555213 GPM6BQ13491 265 aa11.79□□□□□ -0.52
SHMT2-218ENST00000555213 PSMD6Q15008 389 aa11.79□□□□□ -0.52
SHMT2-218ENST00000555213 TPD52L1Q16890 204 aaPredicted RBP11.79□□□□□ -0.52
SHMT2-218ENST00000555213 JADE1Q6IE81 842 aa11.79□□□□□ -0.52
SHMT2-218ENST00000555213 INTS8Q75QN2 995 aaKnown RBP11.79□□□□□ -0.52
SHMT2-218ENST00000555213 WDR49Q8IV35 697 aa11.79□□□□□ -0.52
SHMT2-218ENST00000555213 VSTM4Q8IW00 320 aa11.79□□□□□ -0.52
SHMT2-218ENST00000555213 FAM186BQ8IYM0 893 aa11.79□□□□□ -0.52
SHMT2-218ENST00000555213 KLHL23Q8NBE8 558 aa11.79□□□□□ -0.52
SHMT2-218ENST00000555213 RDH13Q8NBN7 331 aa11.79□□□□□ -0.52
SHMT2-218ENST00000555213 ZSWIM2Q8NEG5 633 aa11.79□□□□□ -0.52
SHMT2-218ENST00000555213 GDPD5Q8WTR4 605 aa11.79□□□□□ -0.52
SHMT2-218ENST00000555213 CCDC127Q96BQ5 260 aa11.79□□□□□ -0.52
SHMT2-218ENST00000555213 IGSF21Q96ID5 467 aa11.79□□□□□ -0.52
SHMT2-218ENST00000555213 ANKRD36BP1Q96IX9 119 aa11.79□□□□□ -0.52
SHMT2-218ENST00000555213 CEP63Q96MT8 703 aa11.79□□□□□ -0.52
SHMT2-218ENST00000555213 FAM161BQ96MY7 647 aa11.79□□□□□ -0.52
SHMT2-218ENST00000555213 ZMAT2Q96NC0 199 aaKnown RBP11.79□□□□□ -0.52
SHMT2-218ENST00000555213 MKNK1Q9BUB5 465 aa11.79□□□□□ -0.52
SHMT2-218ENST00000555213 LMAN2LQ9H0V9 348 aa11.79□□□□□ -0.52
SHMT2-218ENST00000555213 VPS16Q9H269 839 aa11.79□□□□□ -0.52
SHMT2-218ENST00000555213 MIOSQ9NXC5 875 aa11.79□□□□□ -0.52
SHMT2-218ENST00000555213 TAB2Q9NYJ8 693 aa11.79□□□□□ -0.52
SHMT2-218ENST00000555213 TUBGCP4Q9UGJ1 667 aa11.79□□□□□ -0.52
SHMT2-218ENST00000555213 LZTS1Q9Y250 596 aa11.79□□□□□ -0.52
SHMT2-218ENST00000555213 SF3B1O75533 1304 aaKnown RBP eCLIP11.79□□□□□ -0.525e-8■■■■■ 37.4
SHMT2-218ENST00000555213 PODXLO00592 558 aa11.78□□□□□ -0.52
SHMT2-218ENST00000555213 NRP1O14786 923 aa11.78□□□□□ -0.52
SHMT2-218ENST00000555213 MEFVO15553 781 aaPredicted RBP11.78□□□□□ -0.52
SHMT2-218ENST00000555213 TRAPPC3O43617 180 aa11.78□□□□□ -0.52
SHMT2-218ENST00000555213 B4GALT3O60512 393 aa11.78□□□□□ -0.52
SHMT2-218ENST00000555213 TADA2AO75478 443 aa11.78□□□□□ -0.52
SHMT2-218ENST00000555213 AKAP3O75969 853 aa11.78□□□□□ -0.52
SHMT2-218ENST00000555213 B3GAT3O94766 335 aa11.78□□□□□ -0.52
SHMT2-218ENST00000555213 DLATP10515 647 aaKnown RBP11.78□□□□□ -0.52
SHMT2-218ENST00000555213 TNNI1P19237 187 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms