RNA–Protein interactions for RNA: ENST00000554997.1

SYNE2-215, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 711 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-215ENST00000554997 DCAF17Q5H9S7 520 aaPredicted RBP11.02□□□□□ -0.65
SYNE2-215ENST00000554997 MIIPQ5JXC2 388 aa11.02□□□□□ -0.65
SYNE2-215ENST00000554997 GLRA4Q5JXX5 417 aa11.02□□□□□ -0.65
SYNE2-215ENST00000554997 TCERG1LQ5VWI1 586 aa11.02□□□□□ -0.65
SYNE2-215ENST00000554997 KRT39Q6A163 491 aa11.02□□□□□ -0.65
SYNE2-215ENST00000554997 TRAPPC11Q7Z392 1133 aa11.02□□□□□ -0.65
SYNE2-215ENST00000554997 COLGALT2Q8IYK4 626 aa11.02□□□□□ -0.65
SYNE2-215ENST00000554997 LRRC43Q8N309 656 aa11.02□□□□□ -0.65
SYNE2-215ENST00000554997 FIBCD1Q8N539 461 aa11.02□□□□□ -0.65
SYNE2-215ENST00000554997 CXorf38Q8TB03 319 aa11.02□□□□□ -0.65
SYNE2-215ENST00000554997 SP7Q8TDD2 431 aaPredicted RBP11.02□□□□□ -0.65
SYNE2-215ENST00000554997 UROC1Q96N76 676 aa11.02□□□□□ -0.65
SYNE2-215ENST00000554997 NDST4Q9H3R1 872 aa11.02□□□□□ -0.65
SYNE2-215ENST00000554997 CWH43Q9H720 699 aa11.02□□□□□ -0.65
SYNE2-215ENST00000554997 NRDE2Q9H7Z3 1164 aa11.02□□□□□ -0.65
SYNE2-215ENST00000554997 ITGA11Q9UKX5 1188 aa11.02□□□□□ -0.65
SYNE2-215ENST00000554997 PTPRJQ12913 1337 aa11.02□□□□□ -0.65
SYNE2-215ENST00000554997 ANO9A1A5B4 782 aa11.01□□□□□ -0.65
SYNE2-215ENST00000554997 GRXCR1A8MXD5 290 aa11.01□□□□□ -0.65
SYNE2-215ENST00000554997 PIRO00625 290 aa11.01□□□□□ -0.65
SYNE2-215ENST00000554997 AFPP02771 609 aaKnown RBP11.01□□□□□ -0.65
SYNE2-215ENST00000554997 TPM2P07951 284 aa11.01□□□□□ -0.65
SYNE2-215ENST00000554997 TMEM191BP0C7N4 346 aa11.01□□□□□ -0.65
SYNE2-215ENST00000554997 PAX3P23760 479 aa11.01□□□□□ -0.65
SYNE2-215ENST00000554997 FMO5P49326 533 aa11.01□□□□□ -0.65
SYNE2-215ENST00000554997 ALDH7A1P49419 539 aaKnown RBP11.01□□□□□ -0.65
SYNE2-215ENST00000554997 RABGGTBP53611 331 aa11.01□□□□□ -0.65
SYNE2-215ENST00000554997 CETN1Q12798 172 aa11.01□□□□□ -0.65
SYNE2-215ENST00000554997 UPP1Q16831 310 aa11.01□□□□□ -0.65
SYNE2-215ENST00000554997 UVSSAQ2YD98 709 aa11.01□□□□□ -0.65
SYNE2-215ENST00000554997 PAN2Q504Q3 1202 aaKnown RBP11.01□□□□□ -0.65
SYNE2-215ENST00000554997 C9orf57Q5W0N0 161 aa11.01□□□□□ -0.65
SYNE2-215ENST00000554997 LMBRD2Q68DH5 695 aaPredicted RBP11.01□□□□□ -0.65
SYNE2-215ENST00000554997 DCLRE1AQ6PJP8 1040 aa11.01□□□□□ -0.65
SYNE2-215ENST00000554997 CHRDL2Q6WN34 429 aa11.01□□□□□ -0.65
SYNE2-215ENST00000554997 APTXQ7Z2E3 356 aaKnown RBP11.01□□□□□ -0.65
SYNE2-215ENST00000554997 C1orf127Q8N9H9 656 aa11.01□□□□□ -0.65
SYNE2-215ENST00000554997 TMEM175Q9BSA9 504 aa11.01□□□□□ -0.65
SYNE2-215ENST00000554997 MTMR12Q9C0I1 747 aa11.01□□□□□ -0.65
SYNE2-215ENST00000554997 COQ4Q9Y3A0 265 aa11.01□□□□□ -0.65
SYNE2-215ENST00000554997 PCDHA11Q9Y5I1 949 aa11.01□□□□□ -0.65
SYNE2-215ENST00000554997 TTC3P53804 2025 aa11.01□□□□□ -0.65
SYNE2-215ENST00000554997 TRIOBPQ9H2D6 2365 aa11.01□□□□□ -0.65
SYNE2-215ENST00000554997 A0A1W2PPC1 479 aa11□□□□□ -0.65
SYNE2-215ENST00000554997 GTPBP10A4D1E9 387 aaKnown RBP11□□□□□ -0.65
SYNE2-215ENST00000554997 NRP1O14786 923 aa11□□□□□ -0.65
SYNE2-215ENST00000554997 N4BP1O75113 896 aaKnown RBP11□□□□□ -0.65
SYNE2-215ENST00000554997 PHACTR2O75167 634 aa11□□□□□ -0.65
SYNE2-215ENST00000554997 VNN1O95497 513 aa11□□□□□ -0.65
SYNE2-215ENST00000554997 SERPINC1P01008 464 aa11□□□□□ -0.65
SYNE2-215ENST00000554997 ITGB3P05106 788 aa11□□□□□ -0.65
SYNE2-215ENST00000554997 GALTP07902 379 aa11□□□□□ -0.65
SYNE2-215ENST00000554997 ATICP31939 592 aa11□□□□□ -0.65
SYNE2-215ENST00000554997 CLCNKBP51801 687 aa11□□□□□ -0.65
SYNE2-215ENST00000554997 COPB1P53618 953 aaKnown RBP11□□□□□ -0.65
SYNE2-215ENST00000554997 BCAR1P56945 870 aa11□□□□□ -0.65
SYNE2-215ENST00000554997 FANCCQ00597 558 aa11□□□□□ -0.65
SYNE2-215ENST00000554997 TRPC3Q13507 836 aa11□□□□□ -0.65
SYNE2-215ENST00000554997 NR1I3Q14994 352 aa11□□□□□ -0.65
SYNE2-215ENST00000554997 SGSM1Q2NKQ1 1148 aa11□□□□□ -0.65
SYNE2-215ENST00000554997 FILIP1LQ4L180 1135 aa11□□□□□ -0.65
SYNE2-215ENST00000554997 CBWD6Q4V339 395 aa11□□□□□ -0.65
SYNE2-215ENST00000554997 CBWD3Q5JTY5 395 aa11□□□□□ -0.65
SYNE2-215ENST00000554997 CBWD5Q5RIA9 395 aa11□□□□□ -0.65
SYNE2-215ENST00000554997 TDRD10Q5VZ19 366 aaKnown RBP11□□□□□ -0.65
SYNE2-215ENST00000554997 FAM109BQ6ICB4 259 aaPredicted RBP11□□□□□ -0.65
SYNE2-215ENST00000554997 EHBP1Q8NDI1 1231 aa11□□□□□ -0.65
SYNE2-215ENST00000554997 FBXL13Q8NEE6 735 aa11□□□□□ -0.65
SYNE2-215ENST00000554997 TAF4BQ92750 862 aa11□□□□□ -0.65
SYNE2-215ENST00000554997 CLP1Q92989 425 aaKnown RBP11□□□□□ -0.65
SYNE2-215ENST00000554997 NAP1L5Q96NT1 182 aaPredicted RBP11□□□□□ -0.65
SYNE2-215ENST00000554997 COLEC11Q9BWP8 271 aa11□□□□□ -0.65
SYNE2-215ENST00000554997 VPS16Q9H269 839 aa11□□□□□ -0.65
SYNE2-215ENST00000554997 AAASQ9NRG9 546 aa11□□□□□ -0.65
SYNE2-215ENST00000554997 RAB20Q9NX57 234 aa11□□□□□ -0.65
SYNE2-215ENST00000554997 TAB2Q9NYJ8 693 aa11□□□□□ -0.65
SYNE2-215ENST00000554997 DNAJB4Q9UDY4 337 aa11□□□□□ -0.65
SYNE2-215ENST00000554997 TUBGCP4Q9UGJ1 667 aa11□□□□□ -0.65
SYNE2-215ENST00000554997 SIX4Q9UIU6 781 aa11□□□□□ -0.65
SYNE2-215ENST00000554997 AGAP1Q9UPQ3 857 aa11□□□□□ -0.65
SYNE2-215ENST00000554997 FAN1Q9Y2M0 1017 aa11□□□□□ -0.65
SYNE2-215ENST00000554997 R3HCC1Q9Y3T6 440 aaKnown RBP11□□□□□ -0.65
SYNE2-215ENST00000554997 MRPL42Q9Y6G3 142 aaKnown RBP11□□□□□ -0.65
SYNE2-215ENST00000554997 RANBP2P49792 3224 aaKnown RBP11□□□□□ -0.65
SYNE2-215ENST00000554997 TMEM189-UBE2V1I3L0A0 370 aa10.99□□□□□ -0.65
SYNE2-215ENST00000554997 PODXLO00592 558 aa10.99□□□□□ -0.65
SYNE2-215ENST00000554997 B4GALT3O60512 393 aa10.99□□□□□ -0.65
SYNE2-215ENST00000554997 B3GAT3O94766 335 aa10.99□□□□□ -0.65
SYNE2-215ENST00000554997 STAU1O95793 577 aaKnown RBP10.99□□□□□ -0.65
SYNE2-215ENST00000554997 KRT19P08727 400 aa10.99□□□□□ -0.65
SYNE2-215ENST00000554997 LAG3P18627 525 aa10.99□□□□□ -0.65
SYNE2-215ENST00000554997 BMPR1AP36894 532 aa10.99□□□□□ -0.65
SYNE2-215ENST00000554997 PNPLA4P41247 253 aa10.99□□□□□ -0.65
SYNE2-215ENST00000554997 OR1G1P47890 313 aa10.99□□□□□ -0.65
SYNE2-215ENST00000554997 SLC11A1P49279 550 aa10.99□□□□□ -0.65
SYNE2-215ENST00000554997 MXI1P50539 228 aa10.99□□□□□ -0.65
SYNE2-215ENST00000554997 GUCY2FP51841 1108 aa10.99□□□□□ -0.65
SYNE2-215ENST00000554997 UBASH3AP57075 661 aa10.99□□□□□ -0.65
SYNE2-215ENST00000554997 SMAD3P84022 425 aaKnown RBP10.99□□□□□ -0.65
SYNE2-215ENST00000554997 MYO1EQ12965 1108 aa10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 65.9 ms