RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 NFICP08651 508 aa12.61□□□□□ -0.39
CCDC88C-208ENST00000554165 SLFN14P0C7P3 912 aa12.61□□□□□ -0.39
CCDC88C-208ENST00000554165 SCP2P22307 547 aa12.61□□□□□ -0.39
CCDC88C-208ENST00000554165 SP100P23497 879 aaPredicted RBP12.61□□□□□ -0.39
CCDC88C-208ENST00000554165 TKTP29401 623 aaKnown RBP12.61□□□□□ -0.39
CCDC88C-208ENST00000554165 SSTR3P32745 418 aaPredicted RBP12.61□□□□□ -0.39
CCDC88C-208ENST00000554165 JADE1Q6IE81 842 aa12.61□□□□□ -0.39
CCDC88C-208ENST00000554165 CNNM4Q6P4Q7 775 aa12.61□□□□□ -0.39
CCDC88C-208ENST00000554165 TMC5Q6UXY8 1006 aa12.61□□□□□ -0.39
CCDC88C-208ENST00000554165 GJD3Q8N144 294 aa12.61□□□□□ -0.39
CCDC88C-208ENST00000554165 LNX1Q8TBB1 728 aaPredicted RBP12.61□□□□□ -0.39
CCDC88C-208ENST00000554165 POMGNT1Q8WZA1 660 aa12.61□□□□□ -0.39
CCDC88C-208ENST00000554165 SUSD6Q92537 303 aa12.61□□□□□ -0.39
CCDC88C-208ENST00000554165 CASP10Q92851 521 aa12.61□□□□□ -0.39
CCDC88C-208ENST00000554165 HVCN1Q96D96 273 aa12.61□□□□□ -0.39
CCDC88C-208ENST00000554165 FBXL18Q96ME1 805 aa12.61□□□□□ -0.39
CCDC88C-208ENST00000554165 CBWD1Q9BRT8 395 aa12.61□□□□□ -0.39
CCDC88C-208ENST00000554165 PCIF1Q9H4Z3 704 aa12.61□□□□□ -0.39
CCDC88C-208ENST00000554165 PLEKHA5Q9HAU0 1116 aa12.61□□□□□ -0.39
CCDC88C-208ENST00000554165 SLC38A7Q9NVC3 462 aa12.61□□□□□ -0.39
CCDC88C-208ENST00000554165 PCDHB13Q9Y5F0 798 aa12.61□□□□□ -0.39
CCDC88C-208ENST00000554165 PLXNA3P51805 1871 aa12.61□□□□□ -0.39
CCDC88C-208ENST00000554165 PDCD11Q14690 1871 aaKnown RBP12.6□□□□□ -0.39
CCDC88C-208ENST00000554165 KLRC4O43908 158 aa12.6□□□□□ -0.39
CCDC88C-208ENST00000554165 ADRB2P07550 413 aa12.6□□□□□ -0.39
CCDC88C-208ENST00000554165 PRR29P0C7W0 189 aa12.6□□□□□ -0.39
CCDC88C-208ENST00000554165 FGFR3P22607 806 aa12.6□□□□□ -0.39
CCDC88C-208ENST00000554165 AMPD3Q01432 767 aa12.6□□□□□ -0.39
CCDC88C-208ENST00000554165 EHHADHQ08426 723 aa12.6□□□□□ -0.39
CCDC88C-208ENST00000554165 FAM26FQ5R3K3 315 aa12.6□□□□□ -0.39
CCDC88C-208ENST00000554165 UNC13DQ70J99 1090 aa12.6□□□□□ -0.39
CCDC88C-208ENST00000554165 ADHFE1Q8IWW8 467 aa12.6□□□□□ -0.39
CCDC88C-208ENST00000554165 SYCP3Q8IZU3 236 aa12.6□□□□□ -0.39
CCDC88C-208ENST00000554165 FSIP1Q8NA03 581 aa12.6□□□□□ -0.39
CCDC88C-208ENST00000554165 PIK3R5Q8WYR1 880 aa12.6□□□□□ -0.39
CCDC88C-208ENST00000554165 DDX27Q96GQ7 796 aaKnown RBP12.6□□□□□ -0.39
CCDC88C-208ENST00000554165 UROC1Q96N76 676 aa12.6□□□□□ -0.39
CCDC88C-208ENST00000554165 FAM213AQ9BRX8 229 aa12.6□□□□□ -0.39
CCDC88C-208ENST00000554165 SLC39A2Q9NP94 309 aa12.6□□□□□ -0.39
CCDC88C-208ENST00000554165 MAN1C1Q9NR34 630 aa12.6□□□□□ -0.39
CCDC88C-208ENST00000554165 STK39Q9UEW8 545 aa12.6□□□□□ -0.39
CCDC88C-208ENST00000554165 C19orf67A6NJJ6 358 aa12.59□□□□□ -0.39
CCDC88C-208ENST00000554165 TGM5O43548 720 aa12.59□□□□□ -0.39
CCDC88C-208ENST00000554165 RFPL2O75678 378 aa12.59□□□□□ -0.39
CCDC88C-208ENST00000554165 ADH1AP07327 375 aa12.59□□□□□ -0.39
CCDC88C-208ENST00000554165 SRGAP2BP0DMP2 458 aa12.59□□□□□ -0.39
CCDC88C-208ENST00000554165 HOXB8P17481 243 aaPredicted RBP12.59□□□□□ -0.39
CCDC88C-208ENST00000554165 PPP2R3AQ06190 1150 aa12.59□□□□□ -0.39
CCDC88C-208ENST00000554165 CBX2Q14781 532 aaPredicted RBP12.59□□□□□ -0.39
CCDC88C-208ENST00000554165 PSMD5Q16401 504 aa12.59□□□□□ -0.39
CCDC88C-208ENST00000554165 SLFN12LQ6IEE8 588 aa12.59□□□□□ -0.39
CCDC88C-208ENST00000554165 LILRA6Q6PI73 481 aa12.59□□□□□ -0.39
CCDC88C-208ENST00000554165 EPM2AIP1Q7L775 607 aaPredicted RBP12.59□□□□□ -0.39
CCDC88C-208ENST00000554165 NELFCDQ8IXH7 590 aa12.59□□□□□ -0.39
CCDC88C-208ENST00000554165 EFCAB13Q8IY85 973 aa12.59□□□□□ -0.39
CCDC88C-208ENST00000554165 CEP57L1Q8IYX8 460 aa12.59□□□□□ -0.39
CCDC88C-208ENST00000554165 NOC3LQ8WTT2 800 aaKnown RBP12.59□□□□□ -0.39
CCDC88C-208ENST00000554165 RPGRIP1Q96KN7 1286 aa12.59□□□□□ -0.39
CCDC88C-208ENST00000554165 LRRC27Q9C0I9 530 aa12.59□□□□□ -0.39
CCDC88C-208ENST00000554165 SCAND2PQ9GZW5 306 aaPredicted RBP12.59□□□□□ -0.39
CCDC88C-208ENST00000554165 ADAM7Q9H2U9 754 aa12.59□□□□□ -0.39
CCDC88C-208ENST00000554165 POMKQ9H5K3 350 aa12.59□□□□□ -0.39
CCDC88C-208ENST00000554165 EPHX3Q9H6B9 360 aa12.59□□□□□ -0.39
CCDC88C-208ENST00000554165 MAGEF1Q9HAY2 307 aa12.59□□□□□ -0.39
CCDC88C-208ENST00000554165 FNIP2Q9P278 1114 aa12.59□□□□□ -0.39
CCDC88C-208ENST00000554165 EXOC7Q9UPT5 735 aa12.59□□□□□ -0.39
CCDC88C-208ENST00000554165 FAM50BQ9Y247 325 aa12.59□□□□□ -0.39
CCDC88C-208ENST00000554165 ATP6V1DQ9Y5K8 247 aa12.59□□□□□ -0.39
CCDC88C-208ENST00000554165 FAM237AA0A1B0GTK4 181 aa12.58□□□□□ -0.4
CCDC88C-208ENST00000554165 FSD2A1L4K1 749 aa12.58□□□□□ -0.4
CCDC88C-208ENST00000554165 SPTLC1O15269 473 aa12.58□□□□□ -0.4
CCDC88C-208ENST00000554165 TGFB1I1O43294 461 aa12.58□□□□□ -0.4
CCDC88C-208ENST00000554165 GLUD1P00367 558 aa12.58□□□□□ -0.4
CCDC88C-208ENST00000554165 ANK1P16157 1881 aa12.58□□□□□ -0.4
CCDC88C-208ENST00000554165 LRPAP1P30533 357 aa12.58□□□□□ -0.4
CCDC88C-208ENST00000554165 RPL9P32969 192 aaKnown RBP12.58□□□□□ -0.4
CCDC88C-208ENST00000554165 ABCD1P33897 745 aa12.58□□□□□ -0.4
CCDC88C-208ENST00000554165 OR1D2P34982 312 aa12.58□□□□□ -0.4
CCDC88C-208ENST00000554165 SYKP43405 635 aa12.58□□□□□ -0.4
CCDC88C-208ENST00000554165 NUCB2P80303 420 aa12.58□□□□□ -0.4
CCDC88C-208ENST00000554165 KYAT1Q16773 422 aa12.58□□□□□ -0.4
CCDC88C-208ENST00000554165 SPATA1Q5VX52 437 aa12.58□□□□□ -0.4
CCDC88C-208ENST00000554165 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.58□□□□□ -0.4
CCDC88C-208ENST00000554165 PPFIBP1Q86W92 1011 aa12.58□□□□□ -0.4
CCDC88C-208ENST00000554165 ZNF507Q8TCN5 953 aa12.58□□□□□ -0.4
CCDC88C-208ENST00000554165 SCFD1Q8WVM8 642 aa12.58□□□□□ -0.4
CCDC88C-208ENST00000554165 DOCK6Q96HP0 2047 aa12.58□□□□□ -0.4
CCDC88C-208ENST00000554165 DZANK1Q9NVP4 752 aa12.58□□□□□ -0.4
CCDC88C-208ENST00000554165 UBQLN1Q9UMX0 589 aaKnown RBP12.58□□□□□ -0.4
CCDC88C-208ENST00000554165 SSX2IPQ9Y2D8 614 aa12.58□□□□□ -0.4
CCDC88C-208ENST00000554165 NUB1Q9Y5A7 615 aa12.58□□□□□ -0.4
CCDC88C-208ENST00000554165 TIMM13Q9Y5L4 95 aaPredicted RBP12.58□□□□□ -0.4
CCDC88C-208ENST00000554165 A0A1W2PQ27 194 aa12.57□□□□□ -0.4
CCDC88C-208ENST00000554165 A0A1W2PQ64 194 aa12.57□□□□□ -0.4
CCDC88C-208ENST00000554165 A0A1W2PQD8 194 aa12.57□□□□□ -0.4
CCDC88C-208ENST00000554165 SPDYE4A6NLX3 237 aa12.57□□□□□ -0.4
CCDC88C-208ENST00000554165 GARTP22102 1010 aa12.57□□□□□ -0.4
CCDC88C-208ENST00000554165 MCM4P33991 863 aa12.57□□□□□ -0.4
CCDC88C-208ENST00000554165 CDR1P51861 262 aa12.57□□□□□ -0.4
CCDC88C-208ENST00000554165 ELAVL2Q12926 359 aaKnown RBP12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms