RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 PALB2Q86YC2 1186 aa11.2□□□□□ -0.62
CCDC88C-206ENST00000553437 IQUBQ8NA54 791 aa11.2□□□□□ -0.62
CCDC88C-206ENST00000553437 CMASQ8NFW8 434 aaPredicted RBP11.2□□□□□ -0.62
CCDC88C-206ENST00000553437 HDAC7Q8WUI4 952 aa11.2□□□□□ -0.62
CCDC88C-206ENST00000553437 DHX58Q96C10 678 aa11.2□□□□□ -0.62
CCDC88C-206ENST00000553437 HVCN1Q96D96 273 aa11.2□□□□□ -0.62
CCDC88C-206ENST00000553437 CHAMP1Q96JM3 812 aa11.2□□□□□ -0.62
CCDC88C-206ENST00000553437 RPGRIP1Q96KN7 1286 aa11.2□□□□□ -0.62
CCDC88C-206ENST00000553437 NECTIN4Q96NY8 510 aa11.2□□□□□ -0.62
CCDC88C-206ENST00000553437 MSTO1Q9BUK6 570 aa11.2□□□□□ -0.62
CCDC88C-206ENST00000553437 TRIM9Q9C026 710 aa11.2□□□□□ -0.62
CCDC88C-206ENST00000553437 TNMDQ9H2S6 317 aa11.2□□□□□ -0.62
CCDC88C-206ENST00000553437 CUEDC2Q9H467 287 aa11.2□□□□□ -0.62
CCDC88C-206ENST00000553437 SFXN1Q9H9B4 322 aa11.2□□□□□ -0.62
CCDC88C-206ENST00000553437 MRPL44Q9H9J2 332 aaKnown RBP11.2□□□□□ -0.62
CCDC88C-206ENST00000553437 MAN1C1Q9NR34 630 aa11.2□□□□□ -0.62
CCDC88C-206ENST00000553437 PANK4Q9NVE7 773 aa11.2□□□□□ -0.62
CCDC88C-206ENST00000553437 TBC1D7Q9P0N9 293 aa11.2□□□□□ -0.62
CCDC88C-206ENST00000553437 TUBGCP4Q9UGJ1 667 aa11.2□□□□□ -0.62
CCDC88C-206ENST00000553437 CFAP45Q9UL16 551 aa11.2□□□□□ -0.62
CCDC88C-206ENST00000553437 TRIOO75962 3097 aa11.2□□□□□ -0.62
CCDC88C-206ENST00000553437 DCXO43602 365 aa11.19□□□□□ -0.62
CCDC88C-206ENST00000553437 RFPL2O75678 378 aa11.19□□□□□ -0.62
CCDC88C-206ENST00000553437 SPATA31D3P0C874 917 aa11.19□□□□□ -0.62
CCDC88C-206ENST00000553437 MYBP10242 640 aa11.19□□□□□ -0.62
CCDC88C-206ENST00000553437 ALADP13716 330 aa11.19□□□□□ -0.62
CCDC88C-206ENST00000553437 IDEP14735 1019 aa11.19□□□□□ -0.62
CCDC88C-206ENST00000553437 TKTP29401 623 aaKnown RBP11.19□□□□□ -0.62
CCDC88C-206ENST00000553437 LRPAP1P30533 357 aa11.19□□□□□ -0.62
CCDC88C-206ENST00000553437 CREMQ03060 361 aa11.19□□□□□ -0.62
CCDC88C-206ENST00000553437 L1TD1Q5T7N2 865 aaKnown RBP11.19□□□□□ -0.62
CCDC88C-206ENST00000553437 RESP18Q5W5W9 173 aa11.19□□□□□ -0.62
CCDC88C-206ENST00000553437 SLFN12LQ6IEE8 588 aa11.19□□□□□ -0.62
CCDC88C-206ENST00000553437 C15orf39Q6ZRI6 1047 aa11.19□□□□□ -0.62
CCDC88C-206ENST00000553437 SPATA31D4Q6ZUB0 917 aa11.19□□□□□ -0.62
CCDC88C-206ENST00000553437 GLYCTKQ8IVS8 523 aa11.19□□□□□ -0.62
CCDC88C-206ENST00000553437 ZNF707Q96C28 371 aaPredicted RBP11.19□□□□□ -0.62
CCDC88C-206ENST00000553437 RIPOR3Q96MK2 946 aa11.19□□□□□ -0.62
CCDC88C-206ENST00000553437 C1QTNF1Q9BXJ1 281 aa11.19□□□□□ -0.62
CCDC88C-206ENST00000553437 RHOBTB2Q9BYZ6 727 aa11.19□□□□□ -0.62
CCDC88C-206ENST00000553437 PLEKHA4Q9H4M7 779 aa11.19□□□□□ -0.62
CCDC88C-206ENST00000553437 RPF1Q9H9Y2 349 aaKnown RBP11.19□□□□□ -0.62
CCDC88C-206ENST00000553437 MTRRQ9UBK8 725 aa11.19□□□□□ -0.62
CCDC88C-206ENST00000553437 MUTYHQ9UIF7 546 aa11.19□□□□□ -0.62
CCDC88C-206ENST00000553437 C2CD4DB7Z1M9 353 aa11.18□□□□□ -0.62
CCDC88C-206ENST00000553437 POLR2DO15514 142 aaKnown RBP11.18□□□□□ -0.62
CCDC88C-206ENST00000553437 TRAPPC3O43617 180 aa11.18□□□□□ -0.62
CCDC88C-206ENST00000553437 TBC1D4O60343 1298 aa11.18□□□□□ -0.62
CCDC88C-206ENST00000553437 GPR37L1O60883 481 aa11.18□□□□□ -0.62
CCDC88C-206ENST00000553437 GCNT3O95395 438 aa11.18□□□□□ -0.62
CCDC88C-206ENST00000553437 CYP3A5P20815 502 aa11.18□□□□□ -0.62
CCDC88C-206ENST00000553437 ACOT2P49753 483 aa11.18□□□□□ -0.62
CCDC88C-206ENST00000553437 PPP2R3AQ06190 1150 aa11.18□□□□□ -0.62
CCDC88C-206ENST00000553437 RAB33AQ14088 237 aa11.18□□□□□ -0.62
CCDC88C-206ENST00000553437 MRPL58Q14197 206 aaKnown RBP11.18□□□□□ -0.62
CCDC88C-206ENST00000553437 ADALQ6DHV7 355 aa11.18□□□□□ -0.62
CCDC88C-206ENST00000553437 PDXDC1Q6P996 788 aa11.18□□□□□ -0.62
CCDC88C-206ENST00000553437 CRELD2Q6UXH1 353 aaPredicted RBP11.18□□□□□ -0.62
CCDC88C-206ENST00000553437 KREMEN2Q8NCW0 462 aa11.18□□□□□ -0.62
CCDC88C-206ENST00000553437 GLIS3Q8NEA6 775 aa11.18□□□□□ -0.62
CCDC88C-206ENST00000553437 LEO1Q8WVC0 666 aaPredicted RBP11.18□□□□□ -0.62
CCDC88C-206ENST00000553437 HPS3Q969F9 1004 aa11.18□□□□□ -0.62
CCDC88C-206ENST00000553437 KIF12Q96FN5 646 aa11.18□□□□□ -0.62
CCDC88C-206ENST00000553437 ACCSQ96QU6 501 aa11.18□□□□□ -0.62
CCDC88C-206ENST00000553437 TSPAN18Q96SJ8 248 aa11.18□□□□□ -0.62
CCDC88C-206ENST00000553437 C7orf25Q9BPX7 421 aa11.18□□□□□ -0.62
CCDC88C-206ENST00000553437 LRRC27Q9C0I9 530 aa11.18□□□□□ -0.62
CCDC88C-206ENST00000553437 DPP7Q9UHL4 492 aa11.18□□□□□ -0.62
CCDC88C-206ENST00000553437 FBXW11Q9UKB1 542 aa11.18□□□□□ -0.62
CCDC88C-206ENST00000553437 AGO2Q9UKV8 859 aaKnown RBP11.18□□□□□ -0.62
CCDC88C-206ENST00000553437 UBQLN1Q9UMX0 589 aaKnown RBP11.18□□□□□ -0.62
CCDC88C-206ENST00000553437 PCDHB13Q9Y5F0 798 aa11.18□□□□□ -0.62
CCDC88C-206ENST00000553437 BACE2Q9Y5Z0 518 aa11.18□□□□□ -0.62
CCDC88C-206ENST00000553437 CCDC195A0A1B0GUA6 201 aa11.17□□□□□ -0.62
CCDC88C-206ENST00000553437 FAM86C2PA6NEL3 165 aa11.17□□□□□ -0.62
CCDC88C-206ENST00000553437 SYN3O14994 580 aa11.17□□□□□ -0.62
CCDC88C-206ENST00000553437 PRPF6O94906 941 aaKnown RBP11.17□□□□□ -0.62
CCDC88C-206ENST00000553437 SP100P23497 879 aaPredicted RBP11.17□□□□□ -0.62
CCDC88C-206ENST00000553437 CASP1P29466 404 aa11.17□□□□□ -0.62
CCDC88C-206ENST00000553437 HOXD13P35453 343 aa11.17□□□□□ -0.62
CCDC88C-206ENST00000553437 AARSP49588 968 aaKnown RBP eCLIP11.17□□□□□ -0.62
CCDC88C-206ENST00000553437 GUCY2FP51841 1108 aa11.17□□□□□ -0.62
CCDC88C-206ENST00000553437 AMPD3Q01432 767 aa11.17□□□□□ -0.62
CCDC88C-206ENST00000553437 POU5F1Q01860 360 aaKnown RBP11.17□□□□□ -0.62
CCDC88C-206ENST00000553437 EHHADHQ08426 723 aa11.17□□□□□ -0.62
CCDC88C-206ENST00000553437 ALCAMQ13740 583 aa11.17□□□□□ -0.62
CCDC88C-206ENST00000553437 SPATA1Q5VX52 437 aa11.17□□□□□ -0.62
CCDC88C-206ENST00000553437 JADE1Q6IE81 842 aa11.17□□□□□ -0.62
CCDC88C-206ENST00000553437 CYP26C1Q6V0L0 522 aa11.17□□□□□ -0.62
CCDC88C-206ENST00000553437 ANKS3Q6ZW76 656 aa11.17□□□□□ -0.62
CCDC88C-206ENST00000553437 CD302Q8IX05 232 aa11.17□□□□□ -0.62
CCDC88C-206ENST00000553437 CCDC65Q8IXS2 484 aa11.17□□□□□ -0.62
CCDC88C-206ENST00000553437 ZSWIM2Q8NEG5 633 aa11.17□□□□□ -0.62
CCDC88C-206ENST00000553437 SUSD3Q96L08 255 aa11.17□□□□□ -0.62
CCDC88C-206ENST00000553437 LRFN3Q9BTN0 628 aa11.17□□□□□ -0.62
CCDC88C-206ENST00000553437 ASB7Q9H672 318 aa11.17□□□□□ -0.62
CCDC88C-206ENST00000553437 MAGEF1Q9HAY2 307 aa11.17□□□□□ -0.62
CCDC88C-206ENST00000553437 ZDHHC7Q9NXF8 308 aa11.17□□□□□ -0.62
CCDC88C-206ENST00000553437 FAM13BQ9NYF5 915 aa11.17□□□□□ -0.62
CCDC88C-206ENST00000553437 KCNH3Q9ULD8 1083 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms