RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 TRMT1LQ7Z2T5 733 aaKnown RBP5.78□□□□□ -1.48
LIMA1-212ENST00000552491 SRRM1Q8IYB3 904 aaKnown RBP5.78□□□□□ -1.48
LIMA1-212ENST00000552491 SLC17A8Q8NDX2 589 aa5.78□□□□□ -1.48
LIMA1-212ENST00000552491 HELQQ8TDG4 1101 aa5.78□□□□□ -1.48
LIMA1-212ENST00000552491 KCNV2Q8TDN2 545 aa5.78□□□□□ -1.48
LIMA1-212ENST00000552491 ACER1Q8TDN7 264 aa5.78□□□□□ -1.48
LIMA1-212ENST00000552491 C9orf72Q96LT7 481 aa5.78□□□□□ -1.48
LIMA1-212ENST00000552491 ZDHHC15Q96MV8 337 aa5.78□□□□□ -1.48
LIMA1-212ENST00000552491 PLCD4Q9BRC7 762 aa5.78□□□□□ -1.48
LIMA1-212ENST00000552491 ZNF577Q9BSK1 485 aa5.78□□□□□ -1.48
LIMA1-212ENST00000552491 HEMGNQ9BXL5 484 aa5.78□□□□□ -1.48
LIMA1-212ENST00000552491 DCLK3Q9C098 648 aa5.78□□□□□ -1.48
LIMA1-212ENST00000552491 RXFP1Q9HBX9 757 aa5.78□□□□□ -1.48
LIMA1-212ENST00000552491 SLC24A3Q9HC58 644 aa5.78□□□□□ -1.48
LIMA1-212ENST00000552491 GPRC5CQ9NQ84 441 aa5.78□□□□□ -1.48
LIMA1-212ENST00000552491 NOP53Q9NZM5 478 aaKnown RBP5.78□□□□□ -1.48
LIMA1-212ENST00000552491 FRMD4AQ9P2Q2 1039 aaPredicted RBP5.78□□□□□ -1.48
LIMA1-212ENST00000552491 GTF3C4Q9UKN8 822 aa5.78□□□□□ -1.48
LIMA1-212ENST00000552491 NEU2Q9Y3R4 380 aa5.78□□□□□ -1.48
LIMA1-212ENST00000552491 SLX4Q8IY92 1834 aa5.78□□□□□ -1.48
LIMA1-212ENST00000552491 MROH7Q68CQ1 1323 aa5.78□□□□□ -1.48
LIMA1-212ENST00000552491 ANKRD31Q8N7Z5 1873 aa5.78□□□□□ -1.48
LIMA1-212ENST00000552491 KLRG2A4D1S0 409 aaPredicted RBP5.78□□□□□ -1.48
LIMA1-212ENST00000552491 POLRMTO00411 1230 aaKnown RBP5.78□□□□□ -1.48
LIMA1-212ENST00000552491 NEBLO76041 1014 aa5.78□□□□□ -1.48
LIMA1-212ENST00000552491 UPP2O95045 317 aa5.78□□□□□ -1.48
LIMA1-212ENST00000552491 CCNB1P14635 433 aa5.78□□□□□ -1.48
LIMA1-212ENST00000552491 GM2AP17900 193 aa5.78□□□□□ -1.48
LIMA1-212ENST00000552491 ITIH2P19823 946 aa5.78□□□□□ -1.48
LIMA1-212ENST00000552491 GCAP28676 217 aa5.78□□□□□ -1.48
LIMA1-212ENST00000552491 PDE6BP35913 854 aa5.78□□□□□ -1.48
LIMA1-212ENST00000552491 PTK6Q13882 451 aa5.78□□□□□ -1.48
LIMA1-212ENST00000552491 MTFR1Q15390 333 aa5.78□□□□□ -1.48
LIMA1-212ENST00000552491 GLIS1Q8NBF1 620 aa5.78□□□□□ -1.48
LIMA1-212ENST00000552491 TAS1R2Q8TE23 839 aa5.78□□□□□ -1.48
LIMA1-212ENST00000552491 CCDC127Q96BQ5 260 aa5.78□□□□□ -1.48
LIMA1-212ENST00000552491 SAAL1Q96ER3 474 aa5.78□□□□□ -1.48
LIMA1-212ENST00000552491 SNF8Q96H20 258 aa5.78□□□□□ -1.48
LIMA1-212ENST00000552491 C8orf37Q96NL8 207 aa5.78□□□□□ -1.48
LIMA1-212ENST00000552491 TMEM237Q96Q45 408 aa5.78□□□□□ -1.48
LIMA1-212ENST00000552491 KIF9Q9HAQ2 790 aa5.78□□□□□ -1.48
LIMA1-212ENST00000552491 SLCO1B3Q9NPD5 702 aa5.78□□□□□ -1.48
LIMA1-212ENST00000552491 BATF3Q9NR55 127 aa5.78□□□□□ -1.48
LIMA1-212ENST00000552491 KCND2Q9NZV8 630 aa5.78□□□□□ -1.48
LIMA1-212ENST00000552491 ANAPC7Q9UJX3 599 aa5.78□□□□□ -1.48
LIMA1-212ENST00000552491 GRID1Q9ULK0 1009 aa5.78□□□□□ -1.48
LIMA1-212ENST00000552491 IPO5O00410 1097 aaKnown RBP5.77□□□□□ -1.49
LIMA1-212ENST00000552491 SLC16A4O15374 487 aa5.77□□□□□ -1.49
LIMA1-212ENST00000552491 P4HA2O15460 535 aa5.77□□□□□ -1.49
LIMA1-212ENST00000552491 THAP12O43422 761 aa5.77□□□□□ -1.49
LIMA1-212ENST00000552491 SPAG7O75391 227 aa5.77□□□□□ -1.49
LIMA1-212ENST00000552491 TCEA3O75764 348 aa5.77□□□□□ -1.49
LIMA1-212ENST00000552491 VIL1P09327 827 aaKnown RBP5.77□□□□□ -1.49
LIMA1-212ENST00000552491 FGFR1P11362 822 aa5.77□□□□□ -1.49
LIMA1-212ENST00000552491 ITGB5P18084 799 aa5.77□□□□□ -1.49
LIMA1-212ENST00000552491 MUTP22033 750 aa5.77□□□□□ -1.49
LIMA1-212ENST00000552491 CCND1P24385 295 aa5.77□□□□□ -1.49
LIMA1-212ENST00000552491 ATP5DP30049 168 aa5.77□□□□□ -1.49
LIMA1-212ENST00000552491 STX2P32856 288 aa5.77□□□□□ -1.49
LIMA1-212ENST00000552491 CDR2Q01850 454 aa5.77□□□□□ -1.49
LIMA1-212ENST00000552491 CETN1Q12798 172 aa5.77□□□□□ -1.49
LIMA1-212ENST00000552491 VPS72Q15906 364 aa5.77□□□□□ -1.49
LIMA1-212ENST00000552491 GRIPAP1Q4V328 841 aa5.77□□□□□ -1.49
LIMA1-212ENST00000552491 ANKRD20A2Q5SQ80 823 aa5.77□□□□□ -1.49
LIMA1-212ENST00000552491 ANKRD20A1Q5TYW2 823 aa5.77□□□□□ -1.49
LIMA1-212ENST00000552491 MEX3CQ5U5Q3 659 aaKnown RBP5.77□□□□□ -1.49
LIMA1-212ENST00000552491 ANKRD20A3Q5VUR7 823 aa5.77□□□□□ -1.49
LIMA1-212ENST00000552491 RNF43Q68DV7 783 aa5.77□□□□□ -1.49
LIMA1-212ENST00000552491 ACAD10Q6JQN1 1059 aa5.77□□□□□ -1.49
LIMA1-212ENST00000552491 XXYLT1Q8NBI6 393 aa5.77□□□□□ -1.49
LIMA1-212ENST00000552491 IL31RAQ8NI17 732 aa5.77□□□□□ -1.49
LIMA1-212ENST00000552491 MAML1Q92585 1016 aa5.77□□□□□ -1.49
LIMA1-212ENST00000552491 DDX27Q96GQ7 796 aaKnown RBP5.77□□□□□ -1.49
LIMA1-212ENST00000552491 MAGEB18Q96M61 343 aa5.77□□□□□ -1.49
LIMA1-212ENST00000552491 PI4K2AQ9BTU6 479 aa5.77□□□□□ -1.49
LIMA1-212ENST00000552491 KIFC3Q9BVG8 833 aa5.77□□□□□ -1.49
LIMA1-212ENST00000552491 IDI2Q9BXS1 227 aa5.77□□□□□ -1.49
LIMA1-212ENST00000552491 ADAM33Q9BZ11 813 aa5.77□□□□□ -1.49
LIMA1-212ENST00000552491 MYLK2Q9H1R3 596 aa5.77□□□□□ -1.49
LIMA1-212ENST00000552491 UVRAGQ9P2Y5 699 aa5.77□□□□□ -1.49
LIMA1-212ENST00000552491 LGALS13Q9UHV8 139 aa5.77□□□□□ -1.49
LIMA1-212ENST00000552491 ZMYND8Q9ULU4 1186 aaPredicted RBP5.77□□□□□ -1.49
LIMA1-212ENST00000552491 CHKBQ9Y259 395 aa5.77□□□□□ -1.49
LIMA1-212ENST00000552491 NUMBLQ9Y6R0 609 aa5.77□□□□□ -1.49
LIMA1-212ENST00000552491 ZHX2Q9Y6X8 837 aa5.77□□□□□ -1.49
LIMA1-212ENST00000552491 ADGRA3Q8IWK6 1321 aa5.77□□□□□ -1.49
LIMA1-212ENST00000552491 ATRNL1Q5VV63 1379 aa5.77□□□□□ -1.49
LIMA1-212ENST00000552491 DHX15O43143 795 aaKnown RBP5.77□□□□□ -1.49
LIMA1-212ENST00000552491 UNC5CO95185 931 aa5.77□□□□□ -1.49
LIMA1-212ENST00000552491 CFHP08603 1231 aa5.77□□□□□ -1.49
LIMA1-212ENST00000552491 T-ENOLP0DO92 83 aa5.77□□□□□ -1.49
LIMA1-212ENST00000552491 RALAP11233 206 aa5.77□□□□□ -1.49
LIMA1-212ENST00000552491 ADCY8P40145 1251 aa5.77□□□□□ -1.49
LIMA1-212ENST00000552491 RARRES1P49788 294 aa5.77□□□□□ -1.49
LIMA1-212ENST00000552491 CCNHP51946 323 aaPredicted RBP5.77□□□□□ -1.49
LIMA1-212ENST00000552491 RBM5P52756 815 aaKnown RBP eCLIP5.77□□□□□ -1.49
LIMA1-212ENST00000552491 DNAJC3Q13217 504 aa5.77□□□□□ -1.49
LIMA1-212ENST00000552491 KLF1Q13351 362 aaPredicted RBP5.77□□□□□ -1.49
LIMA1-212ENST00000552491 FASTKD3Q14CZ7 662 aaKnown RBP5.77□□□□□ -1.49
LIMA1-212ENST00000552491 HP1BP3Q5SSJ5 553 aaPredicted RBP5.77□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms