RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 TGFBRAP1Q8WUH2 860 aa4.55□□□□□ -1.68
LIMA1-208ENST00000551691 TEKT5Q96M29 485 aa4.55□□□□□ -1.68
LIMA1-208ENST00000551691 MAP3K14Q99558 947 aa4.55□□□□□ -1.68
LIMA1-208ENST00000551691 BDH2Q9BUT1 245 aa4.55□□□□□ -1.68
LIMA1-208ENST00000551691 JAM3Q9BX67 310 aa4.55□□□□□ -1.68
LIMA1-208ENST00000551691 RNF38Q9H0F5 515 aa4.55□□□□□ -1.68
LIMA1-208ENST00000551691 TMX4Q9H1E5 349 aaPredicted RBP4.55□□□□□ -1.68
LIMA1-208ENST00000551691 TTYH1Q9H313 450 aaPredicted RBP4.55□□□□□ -1.68
LIMA1-208ENST00000551691 EPB41L1Q9H4G0 881 aa4.55□□□□□ -1.68
LIMA1-208ENST00000551691 PRDM16Q9HAZ2 1276 aa4.55□□□□□ -1.68
LIMA1-208ENST00000551691 TNFRSF12AQ9NP84 129 aa4.55□□□□□ -1.68
LIMA1-208ENST00000551691 MYOZ2Q9NPC6 264 aa4.55□□□□□ -1.68
LIMA1-208ENST00000551691 TOPORSQ9NS56 1045 aaPredicted RBP4.55□□□□□ -1.68
LIMA1-208ENST00000551691 MARCH2Q9P0N8 246 aa4.55□□□□□ -1.68
LIMA1-208ENST00000551691 PCDHA5Q9Y5H7 936 aa4.55□□□□□ -1.68
LIMA1-208ENST00000551691 SCN7AQ01118 1682 aa4.54□□□□□ -1.68
LIMA1-208ENST00000551691 MUC6Q6W4X9 2439 aa4.54□□□□□ -1.68
LIMA1-208ENST00000551691 TAF1P21675 1872 aa4.54□□□□□ -1.68
LIMA1-208ENST00000551691 KIF7Q2M1P5 1343 aa4.54□□□□□ -1.68
LIMA1-208ENST00000551691 UBN2Q6ZU65 1347 aa4.54□□□□□ -1.68
LIMA1-208ENST00000551691 CFAP54Q96N23 3096 aa4.54□□□□□ -1.68
LIMA1-208ENST00000551691 FFAR3O14843 346 aa4.54□□□□□ -1.68
LIMA1-208ENST00000551691 FGF10O15520 208 aaPredicted RBP4.54□□□□□ -1.68
LIMA1-208ENST00000551691 PRICKLE3O43900 615 aaPredicted RBP4.54□□□□□ -1.68
LIMA1-208ENST00000551691 H2AFYO75367 372 aaKnown RBP4.54□□□□□ -1.68
LIMA1-208ENST00000551691 BBOX1O75936 387 aa4.54□□□□□ -1.68
LIMA1-208ENST00000551691 MYL3P08590 195 aa4.54□□□□□ -1.68
LIMA1-208ENST00000551691 HMOX1P09601 288 aa4.54□□□□□ -1.68
LIMA1-208ENST00000551691 MTHFD2P13995 350 aa4.54□□□□□ -1.68
LIMA1-208ENST00000551691 TACR1P25103 407 aa4.54□□□□□ -1.68
LIMA1-208ENST00000551691 RPS12P25398 132 aaKnown RBP4.54□□□□□ -1.68
LIMA1-208ENST00000551691 SLC16A1P53985 500 aa4.54□□□□□ -1.68
LIMA1-208ENST00000551691 JAM2P57087 298 aa4.54□□□□□ -1.68
LIMA1-208ENST00000551691 GPSM2P81274 684 aa4.54□□□□□ -1.68
LIMA1-208ENST00000551691 LACTBP83111 547 aaPredicted RBP4.54□□□□□ -1.68
LIMA1-208ENST00000551691 UAP1L1Q3KQV9 507 aa4.54□□□□□ -1.68
LIMA1-208ENST00000551691 PLEKHN1Q494U1 663 aaPredicted RBP4.54□□□□□ -1.68
LIMA1-208ENST00000551691 GRAMD1CQ8IYS0 662 aa4.54□□□□□ -1.68
LIMA1-208ENST00000551691 FAM43AQ8N2R8 423 aa4.54□□□□□ -1.68
LIMA1-208ENST00000551691 C7orf31Q8N865 590 aa4.54□□□□□ -1.68
LIMA1-208ENST00000551691 PNISRQ8TF01 805 aaKnown RBP4.54□□□□□ -1.68
LIMA1-208ENST00000551691 SSH1Q8WYL5 1049 aa4.54□□□□□ -1.68
LIMA1-208ENST00000551691 FERMT2Q96AC1 680 aa4.54□□□□□ -1.68
LIMA1-208ENST00000551691 DEFB118Q96PH6 123 aa4.54□□□□□ -1.68
LIMA1-208ENST00000551691 ELF4Q99607 663 aaPredicted RBP4.54□□□□□ -1.68
LIMA1-208ENST00000551691 TEX13AQ9BXU3 409 aaPredicted RBP4.54□□□□□ -1.68
LIMA1-208ENST00000551691 ZDHHC5Q9C0B5 715 aa4.54□□□□□ -1.68
LIMA1-208ENST00000551691 CCM2LQ9NUG4 571 aaPredicted RBP4.54□□□□□ -1.68
LIMA1-208ENST00000551691 TAGLN3Q9UI15 199 aa4.54□□□□□ -1.68
LIMA1-208ENST00000551691 MSRAQ9UJ68 235 aa4.54□□□□□ -1.68
LIMA1-208ENST00000551691 ATP23Q9Y6H3 246 aa4.54□□□□□ -1.68
LIMA1-208ENST00000551691 ALPK3Q96L96 1907 aa4.54□□□□□ -1.68
LIMA1-208ENST00000551691 TCF20Q9UGU0 1960 aaKnown RBP4.53□□□□□ -1.68
LIMA1-208ENST00000551691 C7orf72A4D263 438 aa4.53□□□□□ -1.68
LIMA1-208ENST00000551691 TRIM75PA6NK02 468 aa4.53□□□□□ -1.68
LIMA1-208ENST00000551691 C22orf46C9J442 243 aa4.53□□□□□ -1.68
LIMA1-208ENST00000551691 PMM2O15305 246 aa4.53□□□□□ -1.68
LIMA1-208ENST00000551691 COL6A2P12110 1019 aa4.53□□□□□ -1.68
LIMA1-208ENST00000551691 FOSL2P15408 326 aa4.53□□□□□ -1.68
LIMA1-208ENST00000551691 LPOP22079 712 aaPredicted RBP4.53□□□□□ -1.68
LIMA1-208ENST00000551691 AKAP5P24588 427 aa4.53□□□□□ -1.68
LIMA1-208ENST00000551691 MVKQ03426 396 aa4.53□□□□□ -1.68
LIMA1-208ENST00000551691 ODF1Q14990 250 aa4.53□□□□□ -1.68
LIMA1-208ENST00000551691 INAVAQ3KP66 663 aa4.53□□□□□ -1.68
LIMA1-208ENST00000551691 CCDC157Q569K6 752 aa4.53□□□□□ -1.68
LIMA1-208ENST00000551691 FIGNQ5HY92 759 aa4.53□□□□□ -1.68
LIMA1-208ENST00000551691 RTP2Q5QGT7 225 aa4.53□□□□□ -1.68
LIMA1-208ENST00000551691 OLFML2BQ68BL8 750 aa4.53□□□□□ -1.68
LIMA1-208ENST00000551691 TIGD7Q6NT04 549 aaPredicted RBP4.53□□□□□ -1.68
LIMA1-208ENST00000551691 SRGAP1Q7Z6B7 1085 aa4.53□□□□□ -1.68
LIMA1-208ENST00000551691 CABP7Q86V35 215 aa4.53□□□□□ -1.68
LIMA1-208ENST00000551691 MYLK4Q86YV6 388 aaPredicted RBP4.53□□□□□ -1.68
LIMA1-208ENST00000551691 TEX2Q8IWB9 1127 aa4.53□□□□□ -1.68
LIMA1-208ENST00000551691 SPICE1Q8N0Z3 855 aa4.53□□□□□ -1.68
LIMA1-208ENST00000551691 LINC01356Q8N9X3 169 aa4.53□□□□□ -1.68
LIMA1-208ENST00000551691 BRI3BPQ8WY22 251 aa4.53□□□□□ -1.68
LIMA1-208ENST00000551691 SCLT1Q96NL6 688 aa4.53□□□□□ -1.68
LIMA1-208ENST00000551691 UHRF1Q96T88 793 aaPredicted RBP4.53□□□□□ -1.68
LIMA1-208ENST00000551691 P2RX7Q99572 595 aaKnown RBP4.53□□□□□ -1.68
LIMA1-208ENST00000551691 QRSL1Q9H0R6 528 aaKnown RBP4.53□□□□□ -1.68
LIMA1-208ENST00000551691 BCAS3Q9H6U6 928 aa4.53□□□□□ -1.68
LIMA1-208ENST00000551691 RXFP1Q9HBX9 757 aa4.53□□□□□ -1.68
LIMA1-208ENST00000551691 NLRC4Q9NPP4 1024 aa4.53□□□□□ -1.68
LIMA1-208ENST00000551691 ANLNQ9NQW6 1124 aa4.53□□□□□ -1.68
LIMA1-208ENST00000551691 USP36Q9P275 1121 aaKnown RBP4.53□□□□□ -1.68
LIMA1-208ENST00000551691 GULP1Q9UBP9 304 aa4.53□□□□□ -1.68
LIMA1-208ENST00000551691 DSEQ9UL01 958 aa4.53□□□□□ -1.68
LIMA1-208ENST00000551691 GABRQQ9UN88 632 aa4.53□□□□□ -1.68
LIMA1-208ENST00000551691 KDM3BQ7LBC6 1761 aa4.53□□□□□ -1.69
LIMA1-208ENST00000551691 PRAMEF25A6NGN4 478 aa4.52□□□□□ -1.69
LIMA1-208ENST00000551691 ZNF561-AS1K7EIQ3 104 aa4.52□□□□□ -1.69
LIMA1-208ENST00000551691 WNT10BO00744 389 aa4.52□□□□□ -1.69
LIMA1-208ENST00000551691 ABLIM1O14639 778 aa4.52□□□□□ -1.69
LIMA1-208ENST00000551691 APAF1O14727 1248 aa4.52□□□□□ -1.69
LIMA1-208ENST00000551691 TGM5O43548 720 aa4.52□□□□□ -1.69
LIMA1-208ENST00000551691 TCEA3O75764 348 aa4.52□□□□□ -1.69
LIMA1-208ENST00000551691 APOL3O95236 402 aa4.52□□□□□ -1.69
LIMA1-208ENST00000551691 NTSR2O95665 410 aa4.52□□□□□ -1.69
LIMA1-208ENST00000551691 FUCA1P04066 466 aa4.52□□□□□ -1.69
LIMA1-208ENST00000551691 FPR2P25090 351 aa4.52□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms