RNA–Protein interactions for RNA: ENST00000544363.5

CCM2-219, Transcript of CCM2 scaffold protein, humanhuman

TSL 3 BASIC

Gene CCM2, Length 1,620 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-219ENST00000544363 IPPQ9Y573 584 aa32.77■■■□□ 2.84
CCM2-219ENST00000544363 EVI5O60447 810 aa32.77■■■□□ 2.84
CCM2-219ENST00000544363 RECQL4O94761 1208 aa32.77■■■□□ 2.84
CCM2-219ENST00000544363 SGPL1O95470 568 aa32.77■■■□□ 2.84
CCM2-219ENST00000544363 CCDC172P0C7W6 258 aa32.77■■■□□ 2.84
CCM2-219ENST00000544363 CD52P31358 61 aa32.77■■■□□ 2.84
CCM2-219ENST00000544363 PAK2Q13177 524 aa32.77■■■□□ 2.84
CCM2-219ENST00000544363 ASTE1Q2TB18 679 aaPredicted RBP32.77■■■□□ 2.84
CCM2-219ENST00000544363 SCARA3Q6AZY7 606 aa32.77■■■□□ 2.84
CCM2-219ENST00000544363 REXO1L1PQ8IX06 675 aa32.77■■■□□ 2.84
CCM2-219ENST00000544363 FAM126BQ8IXS8 530 aa32.77■■■□□ 2.84
CCM2-219ENST00000544363 SMG8Q8ND04 991 aaKnown RBP32.77■■■□□ 2.84
CCM2-219ENST00000544363 ARMC5Q96C12 935 aa32.77■■■□□ 2.84
CCM2-219ENST00000544363 APOBEC3GQ9HC16 384 aaKnown RBP32.77■■■□□ 2.84
CCM2-219ENST00000544363 DERAQ9Y315 318 aa32.77■■■□□ 2.84
CCM2-219ENST00000544363 ASS1P00966 412 aaKnown RBP32.76■■■□□ 2.83
CCM2-219ENST00000544363 CTCFP49711 727 aaPredicted RBP32.76■■■□□ 2.83
CCM2-219ENST00000544363 KIF11P52732 1056 aa32.76■■■□□ 2.83
CCM2-219ENST00000544363 NOP14P78316 857 aaKnown RBP32.76■■■□□ 2.83
CCM2-219ENST00000544363 SGSM1Q2NKQ1 1148 aa32.76■■■□□ 2.83
CCM2-219ENST00000544363 SPOPLQ6IQ16 392 aa32.76■■■□□ 2.83
CCM2-219ENST00000544363 TRAF7Q6Q0C0 670 aa32.76■■■□□ 2.83
CCM2-219ENST00000544363 ALKAL1Q6UXT8 129 aa32.76■■■□□ 2.83
CCM2-219ENST00000544363 CAGE1Q8TC20 777 aa32.76■■■□□ 2.83
CCM2-219ENST00000544363 U2AF1L4Q8WU68 220 aaKnown RBP32.76■■■□□ 2.83
CCM2-219ENST00000544363 SHC3Q92529 594 aa32.76■■■□□ 2.83
CCM2-219ENST00000544363 APOL6Q9BWW8 343 aa32.76■■■□□ 2.83
CCM2-219ENST00000544363 RALGAPA2Q2PPJ7 1873 aa32.75■■■□□ 2.83
CCM2-219ENST00000544363 AKR1B10O60218 316 aa32.75■■■□□ 2.83
CCM2-219ENST00000544363 TFRCP02786 760 aaKnown RBP32.75■■■□□ 2.83
CCM2-219ENST00000544363 MYL6P60660 151 aa32.75■■■□□ 2.83
CCM2-219ENST00000544363 C1orf127Q8N9H9 656 aa32.75■■■□□ 2.83
CCM2-219ENST00000544363 KIF12Q96FN5 646 aa32.75■■■□□ 2.83
CCM2-219ENST00000544363 ZSCAN20P17040 1043 aaPredicted RBP32.74■■■□□ 2.83
CCM2-219ENST00000544363 AKAP5P24588 427 aa32.74■■■□□ 2.83
CCM2-219ENST00000544363 PTK2Q05397 1052 aa32.74■■■□□ 2.83
CCM2-219ENST00000544363 CNTN3Q9P232 1028 aa32.74■■■□□ 2.83
CCM2-219ENST00000544363 REXO2Q9Y3B8 237 aaKnown RBP32.74■■■□□ 2.83
CCM2-219ENST00000544363 NUB1Q9Y5A7 615 aa32.74■■■□□ 2.83
CCM2-219ENST00000544363 CD4P01730 458 aa32.73■■■□□ 2.83
CCM2-219ENST00000544363 MNX1P50219 401 aaPredicted RBP32.73■■■□□ 2.83
CCM2-219ENST00000544363 KRT83P78385 493 aa32.73■■■□□ 2.83
CCM2-219ENST00000544363 FAM71AQ8IYT1 594 aa32.73■■■□□ 2.83
CCM2-219ENST00000544363 RNF39Q9H2S5 420 aa32.73■■■□□ 2.83
CCM2-219ENST00000544363 PARP2Q9UGN5 583 aa32.73■■■□□ 2.83
CCM2-219ENST00000544363 SIX4Q9UIU6 781 aa32.73■■■□□ 2.83
CCM2-219ENST00000544363 PCDHB2Q9Y5E7 798 aa32.73■■■□□ 2.83
CCM2-219ENST00000544363 IPO7O95373 1038 aaKnown RBP32.73■■■□□ 2.83
CCM2-219ENST00000544363 LCA5LO95447 670 aa32.73■■■□□ 2.83
CCM2-219ENST00000544363 HSPA1AP0DMV8 641 aaKnown RBP32.73■■■□□ 2.83
CCM2-219ENST00000544363 HSPA1BP0DMV9 641 aaKnown RBP32.73■■■□□ 2.83
CCM2-219ENST00000544363 ZNF571Q7Z3V5 609 aaPredicted RBP32.73■■■□□ 2.83
CCM2-219ENST00000544363 JAKMIP2Q96AA8 810 aa32.73■■■□□ 2.83
CCM2-219ENST00000544363 CXCL16Q9H2A7 254 aa32.73■■■□□ 2.83
CCM2-219ENST00000544363 FAM105AQ9NUU6 356 aa32.73■■■□□ 2.83
CCM2-219ENST00000544363 GOLGA6L9A6NEM1 432 aa32.72■■■□□ 2.83
CCM2-219ENST00000544363 TBXAS1P24557 533 aaPredicted RBP32.72■■■□□ 2.83
CCM2-219ENST00000544363 CUL2Q13617 745 aa32.72■■■□□ 2.83
CCM2-219ENST00000544363 XKR4Q5GH76 650 aa32.72■■■□□ 2.83
CCM2-219ENST00000544363 CXorf38Q8TB03 319 aa32.72■■■□□ 2.83
CCM2-219ENST00000544363 TAF4BQ92750 862 aa32.72■■■□□ 2.83
CCM2-219ENST00000544363 ZMAT2Q96NC0 199 aaKnown RBP32.72■■■□□ 2.83
CCM2-219ENST00000544363 TSPAN18Q96SJ8 248 aa32.72■■■□□ 2.83
CCM2-219ENST00000544363 XYLT2Q9H1B5 865 aa32.72■■■□□ 2.83
CCM2-219ENST00000544363 DPP3Q9NY33 737 aa32.72■■■□□ 2.83
CCM2-219ENST00000544363 ITGB3P05106 788 aa32.71■■■□□ 2.83
CCM2-219ENST00000544363 KRT19P08727 400 aa32.71■■■□□ 2.83
CCM2-219ENST00000544363 ANXA13P27216 316 aa32.71■■■□□ 2.83
CCM2-219ENST00000544363 DSC3Q14574 896 aa32.71■■■□□ 2.83
CCM2-219ENST00000544363 SPA17Q15506 151 aa32.71■■■□□ 2.83
CCM2-219ENST00000544363 ZBTB6Q15916 424 aa32.71■■■□□ 2.83
CCM2-219ENST00000544363 ITGA11Q9UKX5 1188 aa32.71■■■□□ 2.83
CCM2-219ENST00000544363 ZNF263O14978 683 aa32.7■■■□□ 2.83
CCM2-219ENST00000544363 CLSTN1O94985 981 aa32.7■■■□□ 2.83
CCM2-219ENST00000544363 CLCN1P35523 988 aa32.7■■■□□ 2.83
CCM2-219ENST00000544363 USP8P40818 1118 aa32.7■■■□□ 2.83
CCM2-219ENST00000544363 BFSP2Q13515 415 aa32.7■■■□□ 2.83
CCM2-219ENST00000544363 ZNF699Q32M78 642 aa32.7■■■□□ 2.83
CCM2-219ENST00000544363 ARID3AQ99856 593 aa32.7■■■□□ 2.83
CCM2-219ENST00000544363 TRAIPQ9BWF2 469 aa32.7■■■□□ 2.83
CCM2-219ENST00000544363 TRIP11Q15643 1979 aa32.7■■■□□ 2.83
CCM2-219ENST00000544363 UMODL1Q5DID0 1318 aa32.7■■■□□ 2.83
CCM2-219ENST00000544363 OFD1O75665 1012 aa32.69■■■□□ 2.82
CCM2-219ENST00000544363 HACE1Q8IYU2 909 aa32.69■■■□□ 2.82
CCM2-219ENST00000544363 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP32.69■■■□□ 2.82
CCM2-219ENST00000544363 KLK14Q9P0G3 267 aa32.69■■■□□ 2.82
CCM2-219ENST00000544363 KCNE1P15382 129 aa32.69■■■□□ 2.82
CCM2-219ENST00000544363 SELPP16109 830 aa32.69■■■□□ 2.82
CCM2-219ENST00000544363 CYP27A1Q02318 531 aa32.69■■■□□ 2.82
CCM2-219ENST00000544363 GFPT1Q06210 699 aaPredicted RBP32.69■■■□□ 2.82
CCM2-219ENST00000544363 MBTPS1Q14703 1052 aa32.69■■■□□ 2.82
CCM2-219ENST00000544363 SLC18A3Q16572 532 aa32.69■■■□□ 2.82
CCM2-219ENST00000544363 SLC39A5Q6ZMH5 540 aa32.69■■■□□ 2.82
CCM2-219ENST00000544363 ADAMTS1Q9UHI8 967 aa32.69■■■□□ 2.82
CCM2-219ENST00000544363 TLR3O15455 904 aaKnown RBP32.68■■■□□ 2.82
CCM2-219ENST00000544363 MGEA5O60502 916 aa32.68■■■□□ 2.82
CCM2-219ENST00000544363 ATICP31939 592 aa32.68■■■□□ 2.82
CCM2-219ENST00000544363 GUCY2FP51841 1108 aa32.68■■■□□ 2.82
CCM2-219ENST00000544363 NYAP1Q6ZVC0 841 aa32.68■■■□□ 2.82
CCM2-219ENST00000544363 LRRC8DQ7L1W4 858 aa32.68■■■□□ 2.82
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms