RNA–Protein interactions for RNA: ENST00000543627.1

DDB1-222, Transcript of damage specific DNA binding protein 1, human

TSL 5

Gene DDB1, Length 540 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDB1-222	ENST00000543627	HPSE	Q9Y251	543 aa		12.01	□□□□□ -0.49
DDB1-222	ENST00000543627	ZMYM2	Q9UBW7	1377 aa		12.01	□□□□□ -0.49
DDB1-222	ENST00000543627	TRIP11	Q15643	1979 aa		12.01	□□□□□ -0.49
DDB1-222	ENST00000543627	PVALEF	A0A1B0GWK0	134 aa		12	□□□□□ -0.49
DDB1-222	ENST00000543627		A0A1W2PQ27	194 aa		12	□□□□□ -0.49
DDB1-222	ENST00000543627		A0A1W2PQ64	194 aa		12	□□□□□ -0.49
DDB1-222	ENST00000543627		A0A1W2PQD8	194 aa		12	□□□□□ -0.49
DDB1-222	ENST00000543627	TTC26	A0AVF1	554 aa		12	□□□□□ -0.49
DDB1-222	ENST00000543627	FSD2	A1L4K1	749 aa		12	□□□□□ -0.49
DDB1-222	ENST00000543627	XPOT	O43592	962 aa	Known RBP	12	□□□□□ -0.49
DDB1-222	ENST00000543627	RPN1	P04843	607 aa	Known RBP	12	□□□□□ -0.49
DDB1-222	ENST00000543627	ADH1A	P07327	375 aa		12	□□□□□ -0.49
DDB1-222	ENST00000543627	NFIC	P08651	508 aa		12	□□□□□ -0.49
DDB1-222	ENST00000543627	TKT	P29401	623 aa	Known RBP	12	□□□□□ -0.49
DDB1-222	ENST00000543627	ADSS	P30520	456 aa		12	□□□□□ -0.49
DDB1-222	ENST00000543627	RPL9	P32969	192 aa	Known RBP	12	□□□□□ -0.49
DDB1-222	ENST00000543627	CYP2J2	P51589	502 aa		12	□□□□□ -0.49
DDB1-222	ENST00000543627	DSG1	Q02413	1049 aa		12	□□□□□ -0.49
DDB1-222	ENST00000543627	ELAVL2	Q12926	359 aa	Known RBP	12	□□□□□ -0.49
DDB1-222	ENST00000543627	TMEM132D	Q14C87	1099 aa		12	□□□□□ -0.49
DDB1-222	ENST00000543627	PSMD5	Q16401	504 aa		12	□□□□□ -0.49
DDB1-222	ENST00000543627	PUS10	Q3MIT2	529 aa	Known RBP	12	□□□□□ -0.49
DDB1-222	ENST00000543627	XKR4	Q5GH76	650 aa		12	□□□□□ -0.49
DDB1-222	ENST00000543627	CES5A	Q6NT32	575 aa		12	□□□□□ -0.49
DDB1-222	ENST00000543627	TMC5	Q6UXY8	1006 aa		12	□□□□□ -0.49
DDB1-222	ENST00000543627	KRBA2	Q6ZNG9	492 aa		12	□□□□□ -0.49
DDB1-222	ENST00000543627	C3orf58	Q8NDZ4	430 aa		12	□□□□□ -0.49
DDB1-222	ENST00000543627	CCDC34	Q96HJ3	373 aa		12	□□□□□ -0.49
DDB1-222	ENST00000543627	STRA6	Q9BX79	667 aa		12	□□□□□ -0.49
DDB1-222	ENST00000543627	TSHZ2	Q9NRE2	1034 aa		12	□□□□□ -0.49
DDB1-222	ENST00000543627	UBQLN1	Q9UMX0	589 aa	Known RBP	12	□□□□□ -0.49
DDB1-222	ENST00000543627	SPTBN5	Q9NRC6	3674 aa	Known RBP	12	□□□□□ -0.49
DDB1-222	ENST00000543627	CLSTN1	O94985	981 aa		11.99	□□□□□ -0.49
DDB1-222	ENST00000543627	LDHA	P00338	332 aa	Known RBP	11.99	□□□□□ -0.49
DDB1-222	ENST00000543627	GLUD1	P00367	558 aa		11.99	□□□□□ -0.49
DDB1-222	ENST00000543627	TFAM	Q00059	246 aa	Known RBP	11.99	□□□□□ -0.49
DDB1-222	ENST00000543627	SMAD4	Q13485	552 aa	Known RBP	11.99	□□□□□ -0.49
DDB1-222	ENST00000543627	CD302	Q8IX05	232 aa		11.99	□□□□□ -0.49
DDB1-222	ENST00000543627	ZNF507	Q8TCN5	953 aa		11.99	□□□□□ -0.49
DDB1-222	ENST00000543627	MSLNL	Q96KJ4	702 aa		11.99	□□□□□ -0.49
DDB1-222	ENST00000543627	RPGRIP1	Q96KN7	1286 aa		11.99	□□□□□ -0.49
DDB1-222	ENST00000543627	FBXL18	Q96ME1	805 aa		11.99	□□□□□ -0.49
DDB1-222	ENST00000543627	CHST7	Q9NS84	486 aa		11.99	□□□□□ -0.49
DDB1-222	ENST00000543627	RBAK	Q9NYW8	714 aa	Predicted RBP	11.99	□□□□□ -0.49
DDB1-222	ENST00000543627	CHMP5	Q9NZZ3	219 aa		11.99	□□□□□ -0.49
DDB1-222	ENST00000543627	CDH22	Q9UJ99	828 aa		11.99	□□□□□ -0.49
DDB1-222	ENST00000543627	MAPK8IP1	Q9UQF2	711 aa		11.99	□□□□□ -0.49
DDB1-222	ENST00000543627	R3HCC1	Q9Y3T6	440 aa	Known RBP	11.99	□□□□□ -0.49
DDB1-222	ENST00000543627	USP15	Q9Y4E8	981 aa	Predicted RBP	11.99	□□□□□ -0.49
DDB1-222	ENST00000543627	TIMM13	Q9Y5L4	95 aa	Predicted RBP	11.99	□□□□□ -0.49
DDB1-222	ENST00000543627	IRAK3	Q9Y616	596 aa		11.99	□□□□□ -0.49
DDB1-222	ENST00000543627	CIT	O14578	2027 aa		11.99	□□□□□ -0.49
DDB1-222	ENST00000543627	EIF3D	O15371	548 aa	Known RBP eCLIP	11.98	□□□□□ -0.49
DDB1-222	ENST00000543627	KLRC4	O43908	158 aa		11.98	□□□□□ -0.49
DDB1-222	ENST00000543627	EXTL3	O43909	919 aa		11.98	□□□□□ -0.49
DDB1-222	ENST00000543627	FAM189A1	O60320	539 aa		11.98	□□□□□ -0.49
DDB1-222	ENST00000543627	LILRB3	O75022	631 aa		11.98	□□□□□ -0.49
DDB1-222	ENST00000543627	KRT19	P08727	400 aa		11.98	□□□□□ -0.49
DDB1-222	ENST00000543627	GART	P22102	1010 aa		11.98	□□□□□ -0.49
DDB1-222	ENST00000543627	OR1D2	P34982	312 aa		11.98	□□□□□ -0.49
DDB1-222	ENST00000543627	CLCN4	P51793	760 aa		11.98	□□□□□ -0.49
DDB1-222	ENST00000543627	STK4	Q13043	487 aa		11.98	□□□□□ -0.49
DDB1-222	ENST00000543627	LMBRD2	Q68DH5	695 aa	Predicted RBP	11.98	□□□□□ -0.49
DDB1-222	ENST00000543627	CNNM4	Q6P4Q7	775 aa		11.98	□□□□□ -0.49
DDB1-222	ENST00000543627	SYCE2	Q6PIF2	218 aa		11.98	□□□□□ -0.49
DDB1-222	ENST00000543627	CD300LG	Q6UXG3	332 aa		11.98	□□□□□ -0.49
DDB1-222	ENST00000543627	CRELD2	Q6UXH1	353 aa	Predicted RBP	11.98	□□□□□ -0.49
DDB1-222	ENST00000543627	PDZRN4	Q6ZMN7	1036 aa	Predicted RBP	11.98	□□□□□ -0.49
DDB1-222	ENST00000543627	HS2ST1	Q7LGA3	356 aa		11.98	□□□□□ -0.49
DDB1-222	ENST00000543627	GPD1L	Q8N335	351 aa		11.98	□□□□□ -0.49
DDB1-222	ENST00000543627	LNX1	Q8TBB1	728 aa	Predicted RBP	11.98	□□□□□ -0.49
DDB1-222	ENST00000543627	SLC22A17	Q8WUG5	538 aa		11.98	□□□□□ -0.49
DDB1-222	ENST00000543627	SCFD1	Q8WVM8	642 aa		11.98	□□□□□ -0.49
DDB1-222	ENST00000543627	ERCC4	Q92889	916 aa	Predicted RBP	11.98	□□□□□ -0.49
DDB1-222	ENST00000543627	KCNN1	Q92952	543 aa		11.98	□□□□□ -0.49
DDB1-222	ENST00000543627	MAN1C1	Q9NR34	630 aa		11.98	□□□□□ -0.49
DDB1-222	ENST00000543627	APOBEC3C	Q9NRW3	190 aa	Known RBP eCLIP	11.98	□□□□□ -0.49
DDB1-222	ENST00000543627	DPP3	Q9NY33	737 aa		11.98	□□□□□ -0.49
DDB1-222	ENST00000543627	HSPBP1	Q9NZL4	362 aa		11.98	□□□□□ -0.49
DDB1-222	ENST00000543627	CIZ1	Q9ULV3	898 aa	Predicted RBP	11.98	□□□□□ -0.49
DDB1-222	ENST00000543627	STYXL1	Q9Y6J8	313 aa		11.98	□□□□□ -0.49
DDB1-222	ENST00000543627	VCAN	P13611	3396 aa		11.98	□□□□□ -0.49
DDB1-222	ENST00000543627	BRWD1	Q9NSI6	2320 aa		11.97	□□□□□ -0.49
DDB1-222	ENST00000543627	ZNF233	A6NK53	670 aa		11.97	□□□□□ -0.49
DDB1-222	ENST00000543627	PPEF2	O14830	753 aa		11.97	□□□□□ -0.49
DDB1-222	ENST00000543627	ADAM12	O43184	909 aa		11.97	□□□□□ -0.49
DDB1-222	ENST00000543627	TGM5	O43548	720 aa		11.97	□□□□□ -0.49
DDB1-222	ENST00000543627	GADD45B	O75293	160 aa	Predicted RBP	11.97	□□□□□ -0.49
DDB1-222	ENST00000543627	IL18RAP	O95256	599 aa		11.97	□□□□□ -0.49
DDB1-222	ENST00000543627	HOXB8	P17481	243 aa	Predicted RBP	11.97	□□□□□ -0.49
DDB1-222	ENST00000543627	HOXD13	P35453	343 aa		11.97	□□□□□ -0.49
DDB1-222	ENST00000543627	CDR1	P51861	262 aa		11.97	□□□□□ -0.49
DDB1-222	ENST00000543627	CREM	Q03060	361 aa		11.97	□□□□□ -0.49
DDB1-222	ENST00000543627	PSMD2	Q13200	908 aa		11.97	□□□□□ -0.49
DDB1-222	ENST00000543627	PNOC	Q13519	176 aa		11.97	□□□□□ -0.49
DDB1-222	ENST00000543627	COL19A1	Q14993	1142 aa		11.97	□□□□□ -0.49
DDB1-222	ENST00000543627	KNOP1	Q1ED39	458 aa	Known RBP	11.97	□□□□□ -0.49
DDB1-222	ENST00000543627	ATAT1	Q5SQI0	421 aa		11.97	□□□□□ -0.49
DDB1-222	ENST00000543627	SPATA1	Q5VX52	437 aa		11.97	□□□□□ -0.49
DDB1-222	ENST00000543627	ISM2	Q6H9L7	571 aa		11.97	□□□□□ -0.49

Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms