RNA–Protein interactions for RNA: ENST00000543552.5

RTN3-213, Transcript of reticulon 3, humanhuman

TSL 4

Gene RTN3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-213ENST00000543552 NUMBLQ9Y6R0 609 aa14.33□□□□□ -0.12
RTN3-213ENST00000543552 DOCK8Q8NF50 2099 aa14.33□□□□□ -0.12
RTN3-213ENST00000543552 MYH11P35749 1972 aa14.33□□□□□ -0.12
RTN3-213ENST00000543552 I3L4J1 428 aa14.32□□□□□ -0.12
RTN3-213ENST00000543552 PRRG1O14668 218 aa14.32□□□□□ -0.12
RTN3-213ENST00000543552 HNRNPDLO14979 420 aaKnown RBP14.32□□□□□ -0.12
RTN3-213ENST00000543552 XPOTO43592 962 aaKnown RBP14.32□□□□□ -0.12
RTN3-213ENST00000543552 TBCAO75347 108 aaKnown RBP14.32□□□□□ -0.12
RTN3-213ENST00000543552 CD2BP2O95400 341 aaKnown RBP14.32□□□□□ -0.12
RTN3-213ENST00000543552 LRG1P02750 347 aa14.32□□□□□ -0.12
RTN3-213ENST00000543552 KRT18P05783 430 aaKnown RBP14.32□□□□□ -0.12
RTN3-213ENST00000543552 CLTAP09496 248 aa14.32□□□□□ -0.12
RTN3-213ENST00000543552 BRCC3P46736 316 aa14.32□□□□□ -0.12
RTN3-213ENST00000543552 LIG4P49917 911 aa14.32□□□□□ -0.12
RTN3-213ENST00000543552 NCKAP1LP55160 1127 aa14.32□□□□□ -0.12
RTN3-213ENST00000543552 SOX4Q06945 474 aaPredicted RBP14.32□□□□□ -0.12
RTN3-213ENST00000543552 ZNF280DQ6N043 979 aa14.32□□□□□ -0.12
RTN3-213ENST00000543552 GPBP1Q86WP2 473 aa14.32□□□□□ -0.12
RTN3-213ENST00000543552 CCDC105Q8IYK2 499 aa14.32□□□□□ -0.12
RTN3-213ENST00000543552 C3orf58Q8NDZ4 430 aa14.32□□□□□ -0.12
RTN3-213ENST00000543552 ZNF461Q8TAF7 563 aa14.32□□□□□ -0.12
RTN3-213ENST00000543552 FGF13Q92913 245 aa14.32□□□□□ -0.12
RTN3-213ENST00000543552 KCNN1Q92952 543 aa14.32□□□□□ -0.12
RTN3-213ENST00000543552 SHDQ96IW2 340 aa14.32□□□□□ -0.12
RTN3-213ENST00000543552 ZMAT2Q96NC0 199 aaKnown RBP14.32□□□□□ -0.12
RTN3-213ENST00000543552 TSPAN18Q96SJ8 248 aa14.32□□□□□ -0.12
RTN3-213ENST00000543552 PHOX2BQ99453 314 aa14.32□□□□□ -0.12
RTN3-213ENST00000543552 PARVGQ9HBI0 331 aa14.32□□□□□ -0.12
RTN3-213ENST00000543552 ARHGEF3Q9NR81 526 aa14.32□□□□□ -0.12
RTN3-213ENST00000543552 SLC2A4RGQ9NR83 387 aa14.32□□□□□ -0.12
RTN3-213ENST00000543552 FAM86C1Q9NVL1 165 aa14.32□□□□□ -0.12
RTN3-213ENST00000543552 DMDP11532 3685 aa14.32□□□□□ -0.12
RTN3-213ENST00000543552 ZFHX2Q9C0A1 2572 aaPredicted RBP14.31□□□□□ -0.12
RTN3-213ENST00000543552 TRIP11Q15643 1979 aa14.31□□□□□ -0.12
RTN3-213ENST00000543552 VPS13AQ96RL7 3174 aa14.31□□□□□ -0.12
RTN3-213ENST00000543552 PROB1E7EW31 1015 aa14.31□□□□□ -0.12
RTN3-213ENST00000543552 GFRA3O60609 400 aa14.31□□□□□ -0.12
RTN3-213ENST00000543552 FAM13AO94988 1023 aa14.31□□□□□ -0.12
RTN3-213ENST00000543552 NPR3P17342 541 aa14.31□□□□□ -0.12
RTN3-213ENST00000543552 MCM4P33991 863 aa14.31□□□□□ -0.12
RTN3-213ENST00000543552 ROR1Q01973 937 aa14.31□□□□□ -0.12
RTN3-213ENST00000543552 PPP2R3AQ06190 1150 aa14.31□□□□□ -0.12
RTN3-213ENST00000543552 TPGS2Q68CL5 300 aa14.31□□□□□ -0.12
RTN3-213ENST00000543552 PHLDB3Q6NSJ2 640 aa14.31□□□□□ -0.12
RTN3-213ENST00000543552 CD300LGQ6UXG3 332 aa14.31□□□□□ -0.12
RTN3-213ENST00000543552 HAUS6Q7Z4H7 955 aa14.31□□□□□ -0.12
RTN3-213ENST00000543552 MYCT1Q8N699 235 aa14.31□□□□□ -0.12
RTN3-213ENST00000543552 C18orf25Q96B23 403 aaPredicted RBP14.31□□□□□ -0.12
RTN3-213ENST00000543552 ZBTB45Q96K62 511 aaPredicted RBP14.31□□□□□ -0.12
RTN3-213ENST00000543552 SUSD3Q96L08 255 aa14.31□□□□□ -0.12
RTN3-213ENST00000543552 REEP2Q9BRK0 252 aa14.31□□□□□ -0.12
RTN3-213ENST00000543552 OXCT2Q9BYC2 517 aaPredicted RBP14.31□□□□□ -0.12
RTN3-213ENST00000543552 CA14Q9ULX7 337 aa14.31□□□□□ -0.12
RTN3-213ENST00000543552 MAFFQ9ULX9 164 aa14.31□□□□□ -0.12
RTN3-213ENST00000543552 MRPS23Q9Y3D9 190 aaKnown RBP14.31□□□□□ -0.12
RTN3-213ENST00000543552 ARHGEF37A1IGU5 675 aa14.3□□□□□ -0.12
RTN3-213ENST00000543552 VPS37CA5D8V6 355 aaPredicted RBP14.3□□□□□ -0.12
RTN3-213ENST00000543552 K7ENM7 598 aa14.3□□□□□ -0.12
RTN3-213ENST00000543552 MARCKSP29966 332 aaPredicted RBP14.3□□□□□ -0.12
RTN3-213ENST00000543552 NBL1P41271 181 aa14.3□□□□□ -0.12
RTN3-213ENST00000543552 NTHL1P78549 312 aa14.3□□□□□ -0.12
RTN3-213ENST00000543552 PFKPQ01813 784 aa14.3□□□□□ -0.12
RTN3-213ENST00000543552 SLC10A6Q3KNW5 377 aa14.3□□□□□ -0.12
RTN3-213ENST00000543552 CTXN3Q4LDR2 81 aa14.3□□□□□ -0.12
RTN3-213ENST00000543552 ARSHQ5FYA8 562 aa14.3□□□□□ -0.12
RTN3-213ENST00000543552 ELMOD1Q8N336 334 aa14.3□□□□□ -0.12
RTN3-213ENST00000543552 DTWD2Q8NBA8 298 aa14.3□□□□□ -0.12
RTN3-213ENST00000543552 GPR152Q8TDT2 470 aa14.3□□□□□ -0.12
RTN3-213ENST00000543552 TBC1D17Q9HA65 648 aa14.3□□□□□ -0.12
RTN3-213ENST00000543552 AVENQ9NQS1 362 aaPredicted RBP14.3□□□□□ -0.12
RTN3-213ENST00000543552 GDE1Q9NZC3 331 aa14.3□□□□□ -0.12
RTN3-213ENST00000543552 UBQLN1Q9UMX0 589 aaKnown RBP14.3□□□□□ -0.12
RTN3-213ENST00000543552 NPHP3-ACAD11A0A0J9YXS1 232 aa14.29□□□□□ -0.12
RTN3-213ENST00000543552 KRBA1A5PL33 1030 aa14.29□□□□□ -0.12
RTN3-213ENST00000543552 ABLIM3O94929 683 aa14.29□□□□□ -0.12
RTN3-213ENST00000543552 PIGRP01833 764 aa14.29□□□□□ -0.12
RTN3-213ENST00000543552 CXCL8P10145 99 aa14.29□□□□□ -0.12
RTN3-213ENST00000543552 ATF2P15336 505 aa14.29□□□□□ -0.12
RTN3-213ENST00000543552 PTPN2P17706 415 aa14.29□□□□□ -0.12
RTN3-213ENST00000543552 PLCG1P19174 1290 aa14.29□□□□□ -0.12
RTN3-213ENST00000543552 CYP3A5P20815 502 aa14.29□□□□□ -0.12
RTN3-213ENST00000543552 PAX3P23760 479 aa14.29□□□□□ -0.12
RTN3-213ENST00000543552 TXLNAP40222 546 aa14.29□□□□□ -0.12
RTN3-213ENST00000543552 ZNF131P52739 623 aa14.29□□□□□ -0.12
RTN3-213ENST00000543552 ARPP19P56211 112 aa14.29□□□□□ -0.12
RTN3-213ENST00000543552 CACNB1Q02641 598 aaPredicted RBP14.29□□□□□ -0.12
RTN3-213ENST00000543552 DHX8Q14562 1220 aaKnown RBP14.29□□□□□ -0.12
RTN3-213ENST00000543552 SF3A1Q15459 793 aaKnown RBP14.29□□□□□ -0.12
RTN3-213ENST00000543552 PARM1Q6UWI2 310 aa14.29□□□□□ -0.12
RTN3-213ENST00000543552 RSPO2Q6UXX9 243 aaPredicted RBP14.29□□□□□ -0.12
RTN3-213ENST00000543552 NPAS3Q8IXF0 933 aa14.29□□□□□ -0.12
RTN3-213ENST00000543552 TCEAL8Q8IYN2 117 aa14.29□□□□□ -0.12
RTN3-213ENST00000543552 LARP4BQ92615 738 aaKnown RBP14.29□□□□□ -0.12
RTN3-213ENST00000543552 RAD54LQ92698 747 aa14.29□□□□□ -0.12
RTN3-213ENST00000543552 FGF14Q92915 247 aa14.29□□□□□ -0.12
RTN3-213ENST00000543552 KIF12Q96FN5 646 aa14.29□□□□□ -0.12
RTN3-213ENST00000543552 ZHX3Q9H4I2 956 aa14.29□□□□□ -0.12
RTN3-213ENST00000543552 CYP4F11Q9HBI6 524 aa14.29□□□□□ -0.12
RTN3-213ENST00000543552 TUBGCP4Q9UGJ1 667 aa14.29□□□□□ -0.12
RTN3-213ENST00000543552 FBXL5Q9UKA1 691 aa14.29□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms