RNA–Protein interactions for RNA: ENST00000542238.5

RTN3-211, Transcript of reticulon 3, humanhuman

TSL 3

Gene RTN3, Length 735 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-211ENST00000542238 ARPP19P56211 112 aa16.92■□□□□ 0.3
RTN3-211ENST00000542238 OSTNP61366 133 aa16.92■□□□□ 0.3
RTN3-211ENST00000542238 ADCY1Q08828 1119 aa16.92■□□□□ 0.3
RTN3-211ENST00000542238 GNL2Q13823 731 aaKnown RBP16.92■□□□□ 0.3
RTN3-211ENST00000542238 ZNF568Q3ZCX4 644 aa16.92■□□□□ 0.3
RTN3-211ENST00000542238 TTC38Q5R3I4 469 aa16.92■□□□□ 0.3
RTN3-211ENST00000542238 C3orf58Q8NDZ4 430 aa16.92■□□□□ 0.3
RTN3-211ENST00000542238 DNASE1L2Q92874 299 aa16.92■□□□□ 0.3
RTN3-211ENST00000542238 C8orf76Q96K31 380 aa16.92■□□□□ 0.3
RTN3-211ENST00000542238 CORO1BQ9BR76 489 aa16.92■□□□□ 0.3
RTN3-211ENST00000542238 PLA2G2FQ9BZM2 168 aa16.92■□□□□ 0.3
RTN3-211ENST00000542238 FOXP1Q9H334 677 aaPredicted RBP16.92■□□□□ 0.3
RTN3-211ENST00000542238 CYP4F11Q9HBI6 524 aa16.92■□□□□ 0.3
RTN3-211ENST00000542238 ZFP14Q9HCL3 533 aa16.92■□□□□ 0.3
RTN3-211ENST00000542238 HEBP1Q9NRV9 189 aa16.92■□□□□ 0.3
RTN3-211ENST00000542238 DLL3Q9NYJ7 618 aa16.92■□□□□ 0.3
RTN3-211ENST00000542238 LRWD1Q9UFC0 647 aa16.92■□□□□ 0.3
RTN3-211ENST00000542238 KIAA1024Q9UPX6 916 aa16.92■□□□□ 0.3
RTN3-211ENST00000542238 NUB1Q9Y5A7 615 aa16.92■□□□□ 0.3
RTN3-211ENST00000542238 STK24Q9Y6E0 443 aa16.92■□□□□ 0.3
RTN3-211ENST00000542238 PHLPP2Q6ZVD8 1323 aa16.92■□□□□ 0.3
RTN3-211ENST00000542238 WDR27A2RRH5 827 aa16.91■□□□□ 0.3
RTN3-211ENST00000542238 PODXLO00592 558 aa16.91■□□□□ 0.3
RTN3-211ENST00000542238 MAN2B1O00754 1011 aa16.91■□□□□ 0.3
RTN3-211ENST00000542238 SYN3O14994 580 aa16.91■□□□□ 0.3
RTN3-211ENST00000542238 ATF2P15336 505 aa16.91■□□□□ 0.3
RTN3-211ENST00000542238 CEBPBP17676 345 aa16.91■□□□□ 0.3
RTN3-211ENST00000542238 FXR2P51116 673 aaKnown RBP eCLIP16.91■□□□□ 0.3
RTN3-211ENST00000542238 PEX3P56589 373 aa16.91■□□□□ 0.3
RTN3-211ENST00000542238 SOX4Q06945 474 aaPredicted RBP16.91■□□□□ 0.3
RTN3-211ENST00000542238 RSPO4Q2I0M5 234 aaPredicted RBP16.91■□□□□ 0.3
RTN3-211ENST00000542238 XKR4Q5GH76 650 aa16.91■□□□□ 0.3
RTN3-211ENST00000542238 CYP4A22Q5TCH4 519 aa16.91■□□□□ 0.3
RTN3-211ENST00000542238 TANGO2Q6ICL3 276 aa16.91■□□□□ 0.3
RTN3-211ENST00000542238 ALKAL1Q6UXT8 129 aa16.91■□□□□ 0.3
RTN3-211ENST00000542238 TCEAL8Q8IYN2 117 aa16.91■□□□□ 0.3
RTN3-211ENST00000542238 ELMOD1Q8N336 334 aa16.91■□□□□ 0.3
RTN3-211ENST00000542238 CEP120Q8N960 986 aa16.91■□□□□ 0.3
RTN3-211ENST00000542238 ZBTB44Q8NCP5 570 aa16.91■□□□□ 0.3
RTN3-211ENST00000542238 ACAP3Q96P50 834 aa16.91■□□□□ 0.3
RTN3-211ENST00000542238 ACO2Q99798 780 aaKnown RBP16.91■□□□□ 0.3
RTN3-211ENST00000542238 TCHPQ9BT92 498 aa16.91■□□□□ 0.3
RTN3-211ENST00000542238 MRPL4Q9BYD3 311 aaKnown RBP16.91■□□□□ 0.3
RTN3-211ENST00000542238 FAM126AQ9BYI3 521 aaPredicted RBP16.91■□□□□ 0.3
RTN3-211ENST00000542238 RAB34Q9BZG1 259 aa16.91■□□□□ 0.3
RTN3-211ENST00000542238 CDT1Q9H211 546 aa16.91■□□□□ 0.3
RTN3-211ENST00000542238 TMEM134Q9H6X4 195 aa16.91■□□□□ 0.3
RTN3-211ENST00000542238 BRD9Q9H8M2 597 aa16.91■□□□□ 0.3
RTN3-211ENST00000542238 NCOR2Q9Y618 2525 aa16.9■□□□□ 0.3
RTN3-211ENST00000542238 EIF5BO60841 1220 aaKnown RBP16.9■□□□□ 0.3
RTN3-211ENST00000542238 MICAL2O94851 1124 aa16.9■□□□□ 0.3
RTN3-211ENST00000542238 RPL9P32969 192 aaKnown RBP16.9■□□□□ 0.3
RTN3-211ENST00000542238 DMP1Q13316 513 aaPredicted RBP16.9■□□□□ 0.3
RTN3-211ENST00000542238 PDIA5Q14554 519 aa16.9■□□□□ 0.3
RTN3-211ENST00000542238 ECM1Q16610 540 aa16.9■□□□□ 0.3
RTN3-211ENST00000542238 TPGS2Q68CL5 300 aa16.9■□□□□ 0.3
RTN3-211ENST00000542238 IQCEQ6IPM2 695 aa16.9■□□□□ 0.3
RTN3-211ENST00000542238 PDZD4Q76G19 769 aaPredicted RBP16.9■□□□□ 0.3
RTN3-211ENST00000542238 IRF7Q92985 503 aa16.9■□□□□ 0.3
RTN3-211ENST00000542238 TRMT61BQ9BVS5 477 aaKnown RBP16.9■□□□□ 0.3
RTN3-211ENST00000542238 DDX19AQ9NUU7 478 aaKnown RBP16.9■□□□□ 0.3
RTN3-211ENST00000542238 NOL7Q9UMY1 257 aaKnown RBP16.9■□□□□ 0.3
RTN3-211ENST00000542238 SMG5Q9UPR3 1016 aaKnown RBP16.9■□□□□ 0.3
RTN3-211ENST00000542238 RBM19Q9Y4C8 960 aaKnown RBP16.9■□□□□ 0.3
RTN3-211ENST00000542238 F5P12259 2224 aa16.89■□□□□ 0.29
RTN3-211ENST00000542238 MCF2P10911 925 aa16.89■□□□□ 0.29
RTN3-211ENST00000542238 KCNE1P15382 129 aa16.89■□□□□ 0.29
RTN3-211ENST00000542238 NPTX2P47972 431 aa16.89■□□□□ 0.29
RTN3-211ENST00000542238 TRAPPC10P48553 1259 aa16.89■□□□□ 0.29
RTN3-211ENST00000542238 PPP2R5DQ14738 602 aa16.89■□□□□ 0.29
RTN3-211ENST00000542238 CTXN3Q4LDR2 81 aa16.89■□□□□ 0.29
RTN3-211ENST00000542238 FAM78AQ5JUQ0 283 aa16.89■□□□□ 0.29
RTN3-211ENST00000542238 PRSS36Q5K4E3 855 aa16.89■□□□□ 0.29
RTN3-211ENST00000542238 SNX29Q8TEQ0 813 aa16.89■□□□□ 0.29
RTN3-211ENST00000542238 NELL1Q92832 810 aa16.89■□□□□ 0.29
RTN3-211ENST00000542238 DRC1Q96MC2 740 aa16.89■□□□□ 0.29
RTN3-211ENST00000542238 ZNF512Q96ME7 567 aaPredicted RBP16.89■□□□□ 0.29
RTN3-211ENST00000542238 EPC1Q9H2F5 836 aa16.89■□□□□ 0.29
RTN3-211ENST00000542238 PTPRHQ9HD43 1115 aa16.89■□□□□ 0.29
RTN3-211ENST00000542238 KMT5AQ9NQR1 393 aa16.89■□□□□ 0.29
RTN3-211ENST00000542238 PRMT8Q9NR22 394 aaPredicted RBP16.89■□□□□ 0.29
RTN3-211ENST00000542238 FBXL5Q9UKA1 691 aa16.89■□□□□ 0.29
RTN3-211ENST00000542238 MAFFQ9ULX9 164 aa16.89■□□□□ 0.29
RTN3-211ENST00000542238 DNM3Q9UQ16 869 aa16.89■□□□□ 0.29
RTN3-211ENST00000542238 INSL5Q9Y5Q6 135 aa16.89■□□□□ 0.29
RTN3-211ENST00000542238 MYH11P35749 1972 aa16.88■□□□□ 0.29
RTN3-211ENST00000542238 DNAH14Q0VDD8 3507 aa16.88■□□□□ 0.29
RTN3-211ENST00000542238 TBC1D4O60343 1298 aa16.88■□□□□ 0.29
RTN3-211ENST00000542238 LILRB5O75023 590 aa16.88■□□□□ 0.29
RTN3-211ENST00000542238 SEC24AO95486 1093 aa16.88■□□□□ 0.29
RTN3-211ENST00000542238 MCM4P33991 863 aa16.88■□□□□ 0.29
RTN3-211ENST00000542238 NRLP54845 237 aa16.88■□□□□ 0.29
RTN3-211ENST00000542238 MTAPQ13126 283 aa16.88■□□□□ 0.29
RTN3-211ENST00000542238 MRPL58Q14197 206 aaKnown RBP16.88■□□□□ 0.29
RTN3-211ENST00000542238 GRM2Q14416 872 aa16.88■□□□□ 0.29
RTN3-211ENST00000542238 ZNF280DQ6N043 979 aa16.88■□□□□ 0.29
RTN3-211ENST00000542238 TSSK4Q6SA08 328 aa16.88■□□□□ 0.29
RTN3-211ENST00000542238 MPZL3Q6UWV2 235 aa16.88■□□□□ 0.29
RTN3-211ENST00000542238 APPL2Q8NEU8 664 aa16.88■□□□□ 0.29
RTN3-211ENST00000542238 TCEAL4Q96EI5 215 aa16.88■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms