RNA–Protein interactions for RNA: ENST00000541351.3

YBX3-211, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 717 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-211ENST00000541351 TEX51A0A1B0GUA7 166 aa10.52□□□□□ -0.73
YBX3-211ENST00000541351 PATE3B3GLJ2 98 aa10.52□□□□□ -0.73
YBX3-211ENST00000541351 FAM86B1E9PN63 330 aa10.52□□□□□ -0.73
YBX3-211ENST00000541351 TNFRSF10BO14763 440 aa10.52□□□□□ -0.73
YBX3-211ENST00000541351 DKC1O60832 514 aaKnown RBP eCLIP10.52□□□□□ -0.73
YBX3-211ENST00000541351 FAM86B2P0C5J1 330 aa10.52□□□□□ -0.73
YBX3-211ENST00000541351 ATF2P15336 505 aa10.52□□□□□ -0.73
YBX3-211ENST00000541351 SDSP20132 328 aa10.52□□□□□ -0.73
YBX3-211ENST00000541351 CFHR1Q03591 330 aa10.52□□□□□ -0.73
YBX3-211ENST00000541351 BYSLQ13895 437 aaKnown RBP10.52□□□□□ -0.73
YBX3-211ENST00000541351 TMEM196Q5HYL7 178 aa10.52□□□□□ -0.73
YBX3-211ENST00000541351 TCEAL8Q8IYN2 117 aa10.52□□□□□ -0.73
YBX3-211ENST00000541351 TSTD1Q8NFU3 115 aa10.52□□□□□ -0.73
YBX3-211ENST00000541351 TCP11Q8WWU5 503 aa10.52□□□□□ -0.73
YBX3-211ENST00000541351 TCEAL4Q96EI5 215 aa10.52□□□□□ -0.73
YBX3-211ENST00000541351 CYP4F11Q9HBI6 524 aa10.52□□□□□ -0.73
YBX3-211ENST00000541351 MIOSQ9NXC5 875 aa10.52□□□□□ -0.73
YBX3-211ENST00000541351 PARP2Q9UGN5 583 aa10.52□□□□□ -0.73
YBX3-211ENST00000541351 USP9XQ93008 2570 aaPredicted RBP10.51□□□□□ -0.73
YBX3-211ENST00000541351 TDRD15B5MCY1 1934 aaKnown RBP10.51□□□□□ -0.73
YBX3-211ENST00000541351 IGLV3-22A0A075B6J6 115 aa10.51□□□□□ -0.73
YBX3-211ENST00000541351 CCDC69A6NI79 296 aa10.51□□□□□ -0.73
YBX3-211ENST00000541351 E9PAM4 449 aa10.51□□□□□ -0.73
YBX3-211ENST00000541351 DCLK1O15075 740 aa10.51□□□□□ -0.73
YBX3-211ENST00000541351 ADAM12O43184 909 aa10.51□□□□□ -0.73
YBX3-211ENST00000541351 GAS7O60861 476 aa10.51□□□□□ -0.73
YBX3-211ENST00000541351 RNF40O75150 1001 aa10.51□□□□□ -0.73
YBX3-211ENST00000541351 FGF19O95750 216 aa10.51□□□□□ -0.73
YBX3-211ENST00000541351 THP07101 528 aa10.51□□□□□ -0.73
YBX3-211ENST00000541351 SYPP08247 313 aa10.51□□□□□ -0.73
YBX3-211ENST00000541351 FTH1P19P0C7X4 201 aa10.51□□□□□ -0.73
YBX3-211ENST00000541351 SRGAP2CP0DJJ0 459 aa10.51□□□□□ -0.73
YBX3-211ENST00000541351 MYL4P12829 197 aa10.51□□□□□ -0.73
YBX3-211ENST00000541351 PDE1AP54750 535 aa10.51□□□□□ -0.73
YBX3-211ENST00000541351 PLD1Q13393 1074 aa10.51□□□□□ -0.73
YBX3-211ENST00000541351 TPGS2Q68CL5 300 aa10.51□□□□□ -0.73
YBX3-211ENST00000541351 CASC1Q6TDU7 716 aa10.51□□□□□ -0.73
YBX3-211ENST00000541351 CWC27Q6UX04 472 aaKnown RBP10.51□□□□□ -0.73
YBX3-211ENST00000541351 NFXL1Q6ZNB6 911 aa10.51□□□□□ -0.73
YBX3-211ENST00000541351 GALNT15Q8N3T1 639 aa10.51□□□□□ -0.73
YBX3-211ENST00000541351 HASPINQ8TF76 798 aa10.51□□□□□ -0.73
YBX3-211ENST00000541351 PGBD1Q96JS3 809 aa10.51□□□□□ -0.73
YBX3-211ENST00000541351 RIT2Q99578 217 aa10.51□□□□□ -0.73
YBX3-211ENST00000541351 MTA3Q9BTC8 594 aa10.51□□□□□ -0.73
YBX3-211ENST00000541351 PI4K2AQ9BTU6 479 aa10.51□□□□□ -0.73
YBX3-211ENST00000541351 GTPBP2Q9BX10 602 aaKnown RBP10.51□□□□□ -0.73
YBX3-211ENST00000541351 GTSE1Q9NYZ3 720 aa10.51□□□□□ -0.73
YBX3-211ENST00000541351 INSL5Q9Y5Q6 135 aa10.51□□□□□ -0.73
YBX3-211ENST00000541351 NUP205Q92621 2012 aa10.5□□□□□ -0.73
YBX3-211ENST00000541351 NOTCH4Q99466 2003 aa10.5□□□□□ -0.73
YBX3-211ENST00000541351 CASTOR2A6NHX0 329 aa10.5□□□□□ -0.73
YBX3-211ENST00000541351 H7C4K7 107 aa10.5□□□□□ -0.73
YBX3-211ENST00000541351 TRDMT1O14717 391 aaKnown RBP10.5□□□□□ -0.73
YBX3-211ENST00000541351 RRP8O43159 456 aaKnown RBP10.5□□□□□ -0.73
YBX3-211ENST00000541351 ALDH1A2O94788 518 aa10.5□□□□□ -0.73
YBX3-211ENST00000541351 KIF4AO95239 1232 aa10.5□□□□□ -0.73
YBX3-211ENST00000541351 CFIP05156 583 aa10.5□□□□□ -0.73
YBX3-211ENST00000541351 FGFR3P22607 806 aa10.5□□□□□ -0.73
YBX3-211ENST00000541351 EPHA5P54756 1037 aa10.5□□□□□ -0.73
YBX3-211ENST00000541351 TFDP1Q14186 410 aa10.5□□□□□ -0.73
YBX3-211ENST00000541351 DMC1Q14565 340 aa10.5□□□□□ -0.73
YBX3-211ENST00000541351 DUOXA1Q1HG43 343 aa10.5□□□□□ -0.73
YBX3-211ENST00000541351 ARHGAP15Q53QZ3 475 aa10.5□□□□□ -0.73
YBX3-211ENST00000541351 PRR16Q569H4 304 aa10.5□□□□□ -0.73
YBX3-211ENST00000541351 KSR1Q8IVT5 923 aa10.5□□□□□ -0.73
YBX3-211ENST00000541351 SRBD1Q8N5C6 995 aaKnown RBP10.5□□□□□ -0.73
YBX3-211ENST00000541351 ZSWIM3Q96MP5 696 aa10.5□□□□□ -0.73
YBX3-211ENST00000541351 TEKT3Q9BXF9 490 aa10.5□□□□□ -0.73
YBX3-211ENST00000541351 EIF2AQ9BY44 585 aaKnown RBP10.5□□□□□ -0.73
YBX3-211ENST00000541351 RNF39Q9H2S5 420 aa10.5□□□□□ -0.73
YBX3-211ENST00000541351 POLMQ9NP87 494 aaPredicted RBP10.5□□□□□ -0.73
YBX3-211ENST00000541351 KIAA1522Q9P206 1035 aaPredicted RBP10.5□□□□□ -0.73
YBX3-211ENST00000541351 ZMYM5Q9UJ78 669 aa10.5□□□□□ -0.73
YBX3-211ENST00000541351 SLC6A14Q9UN76 642 aa10.5□□□□□ -0.73
YBX3-211ENST00000541351 PDCD11Q14690 1871 aaKnown RBP10.5□□□□□ -0.73
YBX3-211ENST00000541351 KALRNO60229 2985 aa10.49□□□□□ -0.73
YBX3-211ENST00000541351 SHROOM3Q8TF72 1996 aa10.49□□□□□ -0.73
YBX3-211ENST00000541351 SMCO2A6NFE2 343 aa10.49□□□□□ -0.73
YBX3-211ENST00000541351 DDX11L8A8MPP1 907 aa10.49□□□□□ -0.73
YBX3-211ENST00000541351 TMEM189-UBE2V1I3L0A0 370 aa10.49□□□□□ -0.73
YBX3-211ENST00000541351 ABLIM3O94929 683 aa10.49□□□□□ -0.73
YBX3-211ENST00000541351 PLEKHA8P1O95397 391 aa10.49□□□□□ -0.73
YBX3-211ENST00000541351 ROR1Q01973 937 aa10.49□□□□□ -0.73
YBX3-211ENST00000541351 MXD4Q14582 209 aaPredicted RBP10.49□□□□□ -0.73
YBX3-211ENST00000541351 TEAD2Q15562 447 aa10.49□□□□□ -0.73
YBX3-211ENST00000541351 WDR44Q5JSH3 913 aa10.49□□□□□ -0.73
YBX3-211ENST00000541351 LYSMD4Q5XG99 296 aa10.49□□□□□ -0.73
YBX3-211ENST00000541351 SLC8B1Q6J4K2 584 aa10.49□□□□□ -0.73
YBX3-211ENST00000541351 SLC27A1Q6PCB7 646 aa10.49□□□□□ -0.73
YBX3-211ENST00000541351 TOGARAM2Q6ZUX3 1019 aa10.49□□□□□ -0.73
YBX3-211ENST00000541351 MIER3Q7Z3K6 550 aa10.49□□□□□ -0.73
YBX3-211ENST00000541351 RNF149Q8NC42 400 aa10.49□□□□□ -0.73
YBX3-211ENST00000541351 TTC8Q8TAM2 541 aa10.49□□□□□ -0.73
YBX3-211ENST00000541351 PIP4K2CQ8TBX8 421 aa10.49□□□□□ -0.73
YBX3-211ENST00000541351 BPIFB1Q8TDL5 484 aa10.49□□□□□ -0.73
YBX3-211ENST00000541351 PRPF31Q8WWY3 499 aaKnown RBP10.49□□□□□ -0.73
YBX3-211ENST00000541351 DCBLD2Q96PD2 775 aa10.49□□□□□ -0.73
YBX3-211ENST00000541351 HES2Q9Y543 173 aa10.49□□□□□ -0.73
YBX3-211ENST00000541351 TENM4Q6N022 2769 aa10.48□□□□□ -0.73
YBX3-211ENST00000541351 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.48□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms