RNA–Protein interactions for RNA: ENST00000541259.1

DDX55-208, Transcript of DEAD-box helicase 55, human

TSL 3

Gene DDX55, Length 460 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX55-208	ENST00000541259	EOMES	O95936	686 aa		10.11	□□□□□ -0.79
DDX55-208	ENST00000541259	FGB	P02675	491 aa		10.11	□□□□□ -0.79
DDX55-208	ENST00000541259	AFP	P02771	609 aa	Known RBP	10.11	□□□□□ -0.79
DDX55-208	ENST00000541259	PFKM	P08237	780 aa		10.11	□□□□□ -0.79
DDX55-208	ENST00000541259	SKI	P12755	728 aa		10.11	□□□□□ -0.79
DDX55-208	ENST00000541259	MLH1	P40692	756 aa		10.11	□□□□□ -0.79
DDX55-208	ENST00000541259	GUCY2F	P51841	1108 aa		10.11	□□□□□ -0.79
DDX55-208	ENST00000541259	UBASH3A	P57075	661 aa		10.11	□□□□□ -0.79
DDX55-208	ENST00000541259	WDR5	P61964	334 aa	Known RBP	10.11	□□□□□ -0.79
DDX55-208	ENST00000541259	CLDN10	P78369	228 aa		10.11	□□□□□ -0.79
DDX55-208	ENST00000541259	DEFB103A	P81534	67 aa		10.11	□□□□□ -0.79
DDX55-208	ENST00000541259	POU5F1	Q01860	360 aa	Known RBP	10.11	□□□□□ -0.79
DDX55-208	ENST00000541259	PPP2R3A	Q06190	1150 aa		10.11	□□□□□ -0.79
DDX55-208	ENST00000541259	NR1I3	Q14994	352 aa		10.11	□□□□□ -0.79
DDX55-208	ENST00000541259	CBWD6	Q4V339	395 aa		10.11	□□□□□ -0.79
DDX55-208	ENST00000541259	XKR4	Q5GH76	650 aa		10.11	□□□□□ -0.79
DDX55-208	ENST00000541259	CBWD3	Q5JTY5	395 aa		10.11	□□□□□ -0.79
DDX55-208	ENST00000541259	CBWD5	Q5RIA9	395 aa		10.11	□□□□□ -0.79
DDX55-208	ENST00000541259	PACS2	Q86VP3	889 aa		10.11	□□□□□ -0.79
DDX55-208	ENST00000541259	HELQ	Q8TDG4	1101 aa		10.11	□□□□□ -0.79
DDX55-208	ENST00000541259	C18orf25	Q96B23	403 aa	Predicted RBP	10.11	□□□□□ -0.79
DDX55-208	ENST00000541259	ELMO3	Q96BJ8	720 aa		10.11	□□□□□ -0.79
DDX55-208	ENST00000541259	PGBD4	Q96DM1	585 aa		10.11	□□□□□ -0.79
DDX55-208	ENST00000541259	XPO4	Q9C0E2	1151 aa	Known RBP	10.11	□□□□□ -0.79
DDX55-208	ENST00000541259	TMEM117	Q9H0C3	514 aa		10.11	□□□□□ -0.79
DDX55-208	ENST00000541259	NDST4	Q9H3R1	872 aa		10.11	□□□□□ -0.79
DDX55-208	ENST00000541259	RSAD1	Q9HA92	442 aa		10.11	□□□□□ -0.79
DDX55-208	ENST00000541259	PLEKHA5	Q9HAU0	1116 aa		10.11	□□□□□ -0.79
DDX55-208	ENST00000541259	TMEM161A	Q9NX61	479 aa		10.11	□□□□□ -0.79
DDX55-208	ENST00000541259	CNTN3	Q9P232	1028 aa		10.11	□□□□□ -0.79
DDX55-208	ENST00000541259	INPP5F	Q9Y2H2	1132 aa		10.11	□□□□□ -0.79
DDX55-208	ENST00000541259	GIT1	Q9Y2X7	761 aa		10.11	□□□□□ -0.79
DDX55-208	ENST00000541259	PCDHB7	Q9Y5E2	793 aa		10.11	□□□□□ -0.79
DDX55-208	ENST00000541259	COL4A6	Q14031	1691 aa		10.11	□□□□□ -0.79
DDX55-208	ENST00000541259	ZBBX	A8MT70	800 aa		10.1	□□□□□ -0.79
DDX55-208	ENST00000541259	POMC	P01189	267 aa		10.1	□□□□□ -0.79
DDX55-208	ENST00000541259	C4BPA	P04003	597 aa	Known RBP	10.1	□□□□□ -0.79
DDX55-208	ENST00000541259	ACTN1	P12814	892 aa		10.1	□□□□□ -0.79
DDX55-208	ENST00000541259	MAGEA10	P43363	369 aa	Predicted RBP	10.1	□□□□□ -0.79
DDX55-208	ENST00000541259	FMO5	P49326	533 aa		10.1	□□□□□ -0.79
DDX55-208	ENST00000541259	SCNN1G	P51170	649 aa		10.1	□□□□□ -0.79
DDX55-208	ENST00000541259	TFAM	Q00059	246 aa	Known RBP	10.1	□□□□□ -0.79
DDX55-208	ENST00000541259	SOX4	Q06945	474 aa	Predicted RBP	10.1	□□□□□ -0.79
DDX55-208	ENST00000541259	ENPEP	Q07075	957 aa		10.1	□□□□□ -0.79
DDX55-208	ENST00000541259	HSP90AA2P	Q14568	343 aa	Predicted RBP	10.1	□□□□□ -0.79
DDX55-208	ENST00000541259	TMEM132D	Q14C87	1099 aa		10.1	□□□□□ -0.79
DDX55-208	ENST00000541259	SURF1	Q15526	300 aa		10.1	□□□□□ -0.79
DDX55-208	ENST00000541259	ZBTB6	Q15916	424 aa		10.1	□□□□□ -0.79
DDX55-208	ENST00000541259	TDRD10	Q5VZ19	366 aa	Known RBP	10.1	□□□□□ -0.79
DDX55-208	ENST00000541259	FAM117B	Q6P1L5	589 aa		10.1	□□□□□ -0.79
DDX55-208	ENST00000541259	SARM1	Q6SZW1	724 aa		10.1	□□□□□ -0.79
DDX55-208	ENST00000541259	C15orf39	Q6ZRI6	1047 aa		10.1	□□□□□ -0.79
DDX55-208	ENST00000541259	SV2A	Q7L0J3	742 aa		10.1	□□□□□ -0.79
DDX55-208	ENST00000541259	WDR49	Q8IV35	697 aa		10.1	□□□□□ -0.79
DDX55-208	ENST00000541259	CD302	Q8IX05	232 aa		10.1	□□□□□ -0.79
DDX55-208	ENST00000541259	HACE1	Q8IYU2	909 aa		10.1	□□□□□ -0.79
DDX55-208	ENST00000541259	ANKRD20A12P	Q8NF67	263 aa		10.1	□□□□□ -0.79
DDX55-208	ENST00000541259	LBHD1	Q9BQE6	289 aa	Predicted RBP	10.1	□□□□□ -0.79
DDX55-208	ENST00000541259	CRACR2A	Q9BSW2	395 aa		10.1	□□□□□ -0.79
DDX55-208	ENST00000541259	TRIM5	Q9C035	493 aa		10.1	□□□□□ -0.79
DDX55-208	ENST00000541259	MTMR12	Q9C0I1	747 aa		10.1	□□□□□ -0.79
DDX55-208	ENST00000541259	ASB7	Q9H672	318 aa		10.1	□□□□□ -0.79
DDX55-208	ENST00000541259	ELAC1	Q9H777	363 aa	Known RBP	10.1	□□□□□ -0.79
DDX55-208	ENST00000541259	CXXC1	Q9P0U4	656 aa	Predicted RBP	10.1	□□□□□ -0.79
DDX55-208	ENST00000541259	CACNG4	Q9UBN1	327 aa		10.1	□□□□□ -0.79
DDX55-208	ENST00000541259	TUBGCP4	Q9UGJ1	667 aa		10.1	□□□□□ -0.79
DDX55-208	ENST00000541259	LRFN2	Q9ULH4	789 aa		10.1	□□□□□ -0.79
DDX55-208	ENST00000541259	NR2E3	Q9Y5X4	410 aa		10.1	□□□□□ -0.79
DDX55-208	ENST00000541259	LGALS16	A8MUM7	142 aa		10.09	□□□□□ -0.79
DDX55-208	ENST00000541259	B4GALT3	O60512	393 aa		10.09	□□□□□ -0.79
DDX55-208	ENST00000541259	BAIAP3	O94812	1187 aa		10.09	□□□□□ -0.79
DDX55-208	ENST00000541259	VNN1	O95497	513 aa		10.09	□□□□□ -0.79
DDX55-208	ENST00000541259	CST3	P01034	146 aa	Predicted RBP	10.09	□□□□□ -0.79
DDX55-208	ENST00000541259	KCNE1	P15382	129 aa		10.09	□□□□□ -0.79
DDX55-208	ENST00000541259	IGFBP6	P24592	240 aa	Predicted RBP	10.09	□□□□□ -0.79
DDX55-208	ENST00000541259	GTF2H1	P32780	548 aa		10.09	□□□□□ -0.79
DDX55-208	ENST00000541259	KLK7	P49862	253 aa		10.09	□□□□□ -0.79
DDX55-208	ENST00000541259	MRE11	P49959	708 aa		10.09	□□□□□ -0.79
DDX55-208	ENST00000541259	MXI1	P50539	228 aa		10.09	□□□□□ -0.79
DDX55-208	ENST00000541259	ZNF75D	P51815	510 aa		10.09	□□□□□ -0.79
DDX55-208	ENST00000541259	APBA1	Q02410	837 aa		10.09	□□□□□ -0.79
DDX55-208	ENST00000541259	UBXN1	Q04323	297 aa		10.09	□□□□□ -0.79
DDX55-208	ENST00000541259	KCNMA1	Q12791	1236 aa		10.09	□□□□□ -0.79
DDX55-208	ENST00000541259	NAB2	Q15742	525 aa		10.09	□□□□□ -0.79
DDX55-208	ENST00000541259	DUOXA2	Q1HG44	320 aa		10.09	□□□□□ -0.79
DDX55-208	ENST00000541259	ZACN	Q401N2	412 aa		10.09	□□□□□ -0.79
DDX55-208	ENST00000541259	LCE2D	Q5TA82	110 aa	Predicted RBP	10.09	□□□□□ -0.79
DDX55-208	ENST00000541259	FAM43B	Q6ZT52	329 aa	Predicted RBP	10.09	□□□□□ -0.79
DDX55-208	ENST00000541259	TRAPPC11	Q7Z392	1133 aa		10.09	□□□□□ -0.79
DDX55-208	ENST00000541259	NPAS4	Q8IUM7	802 aa		10.09	□□□□□ -0.79
DDX55-208	ENST00000541259	CXorf38	Q8TB03	319 aa		10.09	□□□□□ -0.79
DDX55-208	ENST00000541259	TAS1R2	Q8TE23	839 aa		10.09	□□□□□ -0.79
DDX55-208	ENST00000541259	SEMA4D	Q92854	862 aa		10.09	□□□□□ -0.79
DDX55-208	ENST00000541259	TOP1MT	Q969P6	601 aa		10.09	□□□□□ -0.79
DDX55-208	ENST00000541259	CASD1	Q96PB1	797 aa		10.09	□□□□□ -0.79
DDX55-208	ENST00000541259	PPP1R10	Q96QC0	940 aa	Known RBP	10.09	□□□□□ -0.79
DDX55-208	ENST00000541259	RPS6KC1	Q96S38	1066 aa		10.09	□□□□□ -0.79
DDX55-208	ENST00000541259	GOLGA2P5	Q9HBQ8	144 aa		10.09	□□□□□ -0.79
DDX55-208	ENST00000541259	TMEM8A	Q9HCN3	771 aa		10.09	□□□□□ -0.79
DDX55-208	ENST00000541259	UBN1	Q9NPG3	1134 aa		10.09	□□□□□ -0.79

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