RNA–Protein interactions for RNA: ENST00000540669.1

VPS33A-204, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 455 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-204ENST00000540669 OSTNP61366 133 aa11.41□□□□□ -0.58
VPS33A-204ENST00000540669 TPM4P67936 248 aa11.41□□□□□ -0.58
VPS33A-204ENST00000540669 KCNMA1Q12791 1236 aa11.41□□□□□ -0.58
VPS33A-204ENST00000540669 TMEM132DQ14C87 1099 aa11.41□□□□□ -0.58
VPS33A-204ENST00000540669 ZNF365Q70YC5 407 aa11.41□□□□□ -0.58
VPS33A-204ENST00000540669 USP37Q86T82 979 aa11.41□□□□□ -0.58
VPS33A-204ENST00000540669 RDH13Q8NBN7 331 aa11.41□□□□□ -0.58
VPS33A-204ENST00000540669 RNPC3Q96LT9 517 aaKnown RBP11.41□□□□□ -0.58
VPS33A-204ENST00000540669 CASD1Q96PB1 797 aa11.41□□□□□ -0.58
VPS33A-204ENST00000540669 GAD1Q99259 594 aa11.41□□□□□ -0.58
VPS33A-204ENST00000540669 POP1Q99575 1024 aaKnown RBP11.41□□□□□ -0.58
VPS33A-204ENST00000540669 XPO4Q9C0E2 1151 aaKnown RBP11.41□□□□□ -0.58
VPS33A-204ENST00000540669 MTMR12Q9C0I1 747 aa11.41□□□□□ -0.58
VPS33A-204ENST00000540669 TUBGCP4Q9UGJ1 667 aa11.41□□□□□ -0.58
VPS33A-204ENST00000540669 UBQLN1Q9UMX0 589 aaKnown RBP11.41□□□□□ -0.58
VPS33A-204ENST00000540669 TMEM189-UBE2V1I3L0A0 370 aa11.4□□□□□ -0.58
VPS33A-204ENST00000540669 TEX33O43247 280 aa11.4□□□□□ -0.58
VPS33A-204ENST00000540669 STX10O60499 249 aa11.4□□□□□ -0.58
VPS33A-204ENST00000540669 GJB5O95377 273 aa11.4□□□□□ -0.58
VPS33A-204ENST00000540669 ASS1P00966 412 aaKnown RBP11.4□□□□□ -0.58
VPS33A-204ENST00000540669 CHRM1P11229 460 aaPredicted RBP11.4□□□□□ -0.58
VPS33A-204ENST00000540669 FGFR1P11362 822 aa11.4□□□□□ -0.58
VPS33A-204ENST00000540669 CDC25BP30305 580 aa11.4□□□□□ -0.58
VPS33A-204ENST00000540669 MATR3P43243 847 aaKnown RBP eCLIP11.4□□□□□ -0.58
VPS33A-204ENST00000540669 MTIF2P46199 727 aaKnown RBP11.4□□□□□ -0.58
VPS33A-204ENST00000540669 GCLMP48507 274 aa11.4□□□□□ -0.58
VPS33A-204ENST00000540669 SCNN1GP51170 649 aa11.4□□□□□ -0.58
VPS33A-204ENST00000540669 ZNF75DP51815 510 aa11.4□□□□□ -0.58
VPS33A-204ENST00000540669 YARSP54577 528 aaKnown RBP11.4□□□□□ -0.58
VPS33A-204ENST00000540669 MYL7Q01449 175 aa11.4□□□□□ -0.58
VPS33A-204ENST00000540669 DCAF17Q5H9S7 520 aaPredicted RBP11.4□□□□□ -0.58
VPS33A-204ENST00000540669 FIGNQ5HY92 759 aa11.4□□□□□ -0.58
VPS33A-204ENST00000540669 HABP4Q5JVS0 413 aaKnown RBP11.4□□□□□ -0.58
VPS33A-204ENST00000540669 LMBRD2Q68DH5 695 aaPredicted RBP11.4□□□□□ -0.58
VPS33A-204ENST00000540669 KRT39Q6A163 491 aa11.4□□□□□ -0.58
VPS33A-204ENST00000540669 GLB1LQ6UWU2 654 aa11.4□□□□□ -0.58
VPS33A-204ENST00000540669 CD300LGQ6UXG3 332 aa11.4□□□□□ -0.58
VPS33A-204ENST00000540669 TRAPPC11Q7Z392 1133 aa11.4□□□□□ -0.58
VPS33A-204ENST00000540669 TMEM130Q8N3G9 435 aa11.4□□□□□ -0.58
VPS33A-204ENST00000540669 LRRC52Q8N7C0 313 aa11.4□□□□□ -0.58
VPS33A-204ENST00000540669 UBR7Q8N806 425 aa11.4□□□□□ -0.58
VPS33A-204ENST00000540669 PHOSPHO2Q8TCD6 241 aa11.4□□□□□ -0.58
VPS33A-204ENST00000540669 TAS1R2Q8TE23 839 aa11.4□□□□□ -0.58
VPS33A-204ENST00000540669 SEMA4DQ92854 862 aa11.4□□□□□ -0.58
VPS33A-204ENST00000540669 CCDC127Q96BQ5 260 aa11.4□□□□□ -0.58
VPS33A-204ENST00000540669 FAXDC2Q96IV6 333 aa11.4□□□□□ -0.58
VPS33A-204ENST00000540669 PDLIM2Q96JY6 352 aa11.4□□□□□ -0.58
VPS33A-204ENST00000540669 SLC9A7Q96T83 725 aa11.4□□□□□ -0.58
VPS33A-204ENST00000540669 GANQ9H2C0 597 aa11.4□□□□□ -0.58
VPS33A-204ENST00000540669 PLCB1Q9NQ66 1216 aa11.4□□□□□ -0.58
VPS33A-204ENST00000540669 TBC1D13Q9NVG8 400 aa11.4□□□□□ -0.58
VPS33A-204ENST00000540669 IFNKQ9P0W0 207 aa11.4□□□□□ -0.58
VPS33A-204ENST00000540669 MAGEC2Q9UBF1 373 aaPredicted RBP11.4□□□□□ -0.58
VPS33A-204ENST00000540669 FBXL5Q9UKA1 691 aa11.4□□□□□ -0.58
VPS33A-204ENST00000540669 ITGA11Q9UKX5 1188 aa11.4□□□□□ -0.58
VPS33A-204ENST00000540669 GOLGA6L3A6NEY3 463 aa11.39□□□□□ -0.59
VPS33A-204ENST00000540669 PIRO00625 290 aa11.39□□□□□ -0.59
VPS33A-204ENST00000540669 PPEF2O14830 753 aa11.39□□□□□ -0.59
VPS33A-204ENST00000540669 LRRN2O75325 713 aa11.39□□□□□ -0.59
VPS33A-204ENST00000540669 NOL4O94818 638 aa11.39□□□□□ -0.59
VPS33A-204ENST00000540669 FGBP02675 491 aa11.39□□□□□ -0.59
VPS33A-204ENST00000540669 AMHP03971 560 aa11.39□□□□□ -0.59
VPS33A-204ENST00000540669 DLATP10515 647 aaKnown RBP11.39□□□□□ -0.59
VPS33A-204ENST00000540669 MRE11P49959 708 aa11.39□□□□□ -0.59
VPS33A-204ENST00000540669 GATMP50440 423 aa11.39□□□□□ -0.59
VPS33A-204ENST00000540669 TUSC3Q13454 348 aa11.39□□□□□ -0.59
VPS33A-204ENST00000540669 ARID5BQ14865 1188 aa11.39□□□□□ -0.59
VPS33A-204ENST00000540669 DUOXA2Q1HG44 320 aa11.39□□□□□ -0.59
VPS33A-204ENST00000540669 NOMO2Q5JPE7 1267 aa11.39□□□□□ -0.59
VPS33A-204ENST00000540669 GLRA4Q5JXX5 417 aa11.39□□□□□ -0.59
VPS33A-204ENST00000540669 TRIM65Q6PJ69 517 aa11.39□□□□□ -0.59
VPS33A-204ENST00000540669 VSTM4Q8IW00 320 aa11.39□□□□□ -0.59
VPS33A-204ENST00000540669 COLGALT2Q8IYK4 626 aa11.39□□□□□ -0.59
VPS33A-204ENST00000540669 CMTR2Q8IYT2 770 aaKnown RBP11.39□□□□□ -0.59
VPS33A-204ENST00000540669 RNF168Q8IYW5 571 aaPredicted RBP11.39□□□□□ -0.59
VPS33A-204ENST00000540669 FBXL13Q8NEE6 735 aa11.39□□□□□ -0.59
VPS33A-204ENST00000540669 ANKRD20A12PQ8NF67 263 aa11.39□□□□□ -0.59
VPS33A-204ENST00000540669 HELQQ8TDG4 1101 aa11.39□□□□□ -0.59
VPS33A-204ENST00000540669 C18orf25Q96B23 403 aaPredicted RBP11.39□□□□□ -0.59
VPS33A-204ENST00000540669 FNBP1Q96RU3 617 aa11.39□□□□□ -0.59
VPS33A-204ENST00000540669 APOL6Q9BWW8 343 aa11.39□□□□□ -0.59
VPS33A-204ENST00000540669 NAA15Q9BXJ9 866 aaKnown RBP11.39□□□□□ -0.59
VPS33A-204ENST00000540669 MRPL9Q9BYD2 267 aaKnown RBP11.39□□□□□ -0.59
VPS33A-204ENST00000540669 VPS16Q9H269 839 aa11.39□□□□□ -0.59
VPS33A-204ENST00000540669 SLC38A7Q9NVC3 462 aa11.39□□□□□ -0.59
VPS33A-204ENST00000540669 KLK14Q9P0G3 267 aa11.39□□□□□ -0.59
VPS33A-204ENST00000540669 PLXNA4Q9HCM2 1894 aa11.38□□□□□ -0.59
VPS33A-204ENST00000540669 ZBBXA8MT70 800 aa11.38□□□□□ -0.59
VPS33A-204ENST00000540669 EPHB6O15197 1021 aa11.38□□□□□ -0.59
VPS33A-204ENST00000540669 ZC3H11AO75152 810 aaKnown RBP eCLIP11.38□□□□□ -0.59
VPS33A-204ENST00000540669 DDHD2O94830 711 aa11.38□□□□□ -0.59
VPS33A-204ENST00000540669 HLA-DRAP01903 254 aa11.38□□□□□ -0.59
VPS33A-204ENST00000540669 PYGBP11216 843 aa11.38□□□□□ -0.59
VPS33A-204ENST00000540669 PON1P27169 355 aa11.38□□□□□ -0.59
VPS33A-204ENST00000540669 KCNJ6P48051 423 aa11.38□□□□□ -0.59
VPS33A-204ENST00000540669 GUCY2FP51841 1108 aa11.38□□□□□ -0.59
VPS33A-204ENST00000540669 UBASH3AP57075 661 aa11.38□□□□□ -0.59
VPS33A-204ENST00000540669 TBX2Q13207 712 aaPredicted RBP11.38□□□□□ -0.59
VPS33A-204ENST00000540669 UPP1Q16831 310 aa11.38□□□□□ -0.59
VPS33A-204ENST00000540669 C9orf50Q5SZB4 431 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 80.8 ms