RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 PIH1D3Q9NQM4 214 aaKnown RBP10.02□□□□□ -0.81
CLIP1-214ENST00000540539 CNGB3Q9NQW8 809 aa10.02□□□□□ -0.81
CLIP1-214ENST00000540539 CEP72Q9P209 647 aa10.02□□□□□ -0.81
CLIP1-214ENST00000540539 AFDNP55196 1824 aaKnown RBP10.01□□□□□ -0.81
CLIP1-214ENST00000540539 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.01□□□□□ -0.81
CLIP1-214ENST00000540539 ATP5J2-PTCD1G3V325 749 aa10.01□□□□□ -0.81
CLIP1-214ENST00000540539 AP1G1O43747 822 aa10.01□□□□□ -0.81
CLIP1-214ENST00000540539 DCTN3O75935 186 aa10.01□□□□□ -0.81
CLIP1-214ENST00000540539 CAMTA2O94983 1202 aa10.01□□□□□ -0.81
CLIP1-214ENST00000540539 STAMBPO95630 424 aa10.01□□□□□ -0.81
CLIP1-214ENST00000540539 HMOX2P30519 316 aa10.01□□□□□ -0.81
CLIP1-214ENST00000540539 ETV3P41162 512 aa10.01□□□□□ -0.81
CLIP1-214ENST00000540539 DNM2P50570 870 aa10.01□□□□□ -0.81
CLIP1-214ENST00000540539 NOP14P78316 857 aaKnown RBP10.01□□□□□ -0.81
CLIP1-214ENST00000540539 TRIM71Q2Q1W2 868 aaKnown RBP10.01□□□□□ -0.81
CLIP1-214ENST00000540539 CWF19L2Q2TBE0 894 aaKnown RBP10.01□□□□□ -0.81
CLIP1-214ENST00000540539 BOLA3Q53S33 107 aa10.01□□□□□ -0.81
CLIP1-214ENST00000540539 COBLL1Q53SF7 1204 aa10.01□□□□□ -0.81
CLIP1-214ENST00000540539 TAF1BQ53T94 588 aaPredicted RBP10.01□□□□□ -0.81
CLIP1-214ENST00000540539 TRAPPC3LQ5T215 181 aa10.01□□□□□ -0.81
CLIP1-214ENST00000540539 RAPH1Q70E73 1250 aa10.01□□□□□ -0.81
CLIP1-214ENST00000540539 ACMSDQ8TDX5 336 aa10.01□□□□□ -0.81
CLIP1-214ENST00000540539 AKT1S1Q96B36 256 aa10.01□□□□□ -0.81
CLIP1-214ENST00000540539 PITPNM3Q9BZ71 974 aa10.01□□□□□ -0.81
CLIP1-214ENST00000540539 CELF4Q9BZC1 486 aaKnown RBP10.01□□□□□ -0.81
CLIP1-214ENST00000540539 TRIM31Q9BZY9 425 aa10.01□□□□□ -0.81
CLIP1-214ENST00000540539 ZFYVE28Q9HCC9 887 aa10.01□□□□□ -0.81
CLIP1-214ENST00000540539 MAN1C1Q9NR34 630 aa10.01□□□□□ -0.81
CLIP1-214ENST00000540539 ZDHHC7Q9NXF8 308 aa10.01□□□□□ -0.81
CLIP1-214ENST00000540539 NDE1Q9NXR1 346 aa10.01□□□□□ -0.81
CLIP1-214ENST00000540539 SATB2Q9UPW6 733 aa10.01□□□□□ -0.81
CLIP1-214ENST00000540539 MAD1L1Q9Y6D9 718 aa10.01□□□□□ -0.81
CLIP1-214ENST00000540539 C15orf38-AP3S2A0A0A6YYH1 394 aa10.01□□□□□ -0.81
CLIP1-214ENST00000540539 KLF18A0A0U1RQI7 1052 aa10.01□□□□□ -0.81
CLIP1-214ENST00000540539 LINC00854A0A1B0GVQ3 168 aa10.01□□□□□ -0.81
CLIP1-214ENST00000540539 SFI1A8K8P3 1242 aa10.01□□□□□ -0.81
CLIP1-214ENST00000540539 PFDN6O15212 129 aa10.01□□□□□ -0.81
CLIP1-214ENST00000540539 GSC2O15499 205 aa10.01□□□□□ -0.81
CLIP1-214ENST00000540539 AQP9O43315 295 aa10.01□□□□□ -0.81
CLIP1-214ENST00000540539 RANBP6O60518 1105 aaKnown RBP10.01□□□□□ -0.81
CLIP1-214ENST00000540539 USP1O94782 785 aa10.01□□□□□ -0.81
CLIP1-214ENST00000540539 FARP2O94887 1054 aaPredicted RBP10.01□□□□□ -0.81
CLIP1-214ENST00000540539 IGKV5-2P06315 115 aa10.01□□□□□ -0.81
CLIP1-214ENST00000540539 ESRRAP11474 423 aaPredicted RBP10.01□□□□□ -0.81
CLIP1-214ENST00000540539 PPARGP37231 505 aaPredicted RBP10.01□□□□□ -0.81
CLIP1-214ENST00000540539 BTKQ06187 659 aa10.01□□□□□ -0.81
CLIP1-214ENST00000540539 DLG1Q12959 904 aa10.01□□□□□ -0.81
CLIP1-214ENST00000540539 MPP2Q14168 576 aa10.01□□□□□ -0.81
CLIP1-214ENST00000540539 PDK3Q15120 406 aa10.01□□□□□ -0.81
CLIP1-214ENST00000540539 ARPINQ7Z6K5 226 aa10.01□□□□□ -0.81
CLIP1-214ENST00000540539 PDSS2Q86YH6 399 aa10.01□□□□□ -0.81
CLIP1-214ENST00000540539 LSMEM2Q8N112 164 aa10.01□□□□□ -0.81
CLIP1-214ENST00000540539 ADSSL1Q8N142 457 aa10.01□□□□□ -0.81
CLIP1-214ENST00000540539 CENPSQ8N2Z9 138 aa10.01□□□□□ -0.81
CLIP1-214ENST00000540539 KCTD17Q8N5Z5 321 aa10.01□□□□□ -0.81
CLIP1-214ENST00000540539 ZNF579Q8NAF0 562 aaKnown RBP10.01□□□□□ -0.81
CLIP1-214ENST00000540539 EXD1Q8NHP7 514 aa10.01□□□□□ -0.81
CLIP1-214ENST00000540539 BRSK1Q8TDC3 778 aa10.01□□□□□ -0.81
CLIP1-214ENST00000540539 UPF1Q92900 1129 aaKnown RBP eCLIP10.01□□□□□ -0.81
CLIP1-214ENST00000540539 SPZ1Q9BXG8 430 aa10.01□□□□□ -0.81
CLIP1-214ENST00000540539 TYW1Q9NV66 732 aaKnown RBP10.01□□□□□ -0.81
CLIP1-214ENST00000540539 TFCP2L1Q9NZI6 479 aa10.01□□□□□ -0.81
CLIP1-214ENST00000540539 CRNNQ9UBG3 495 aaPredicted RBP10.01□□□□□ -0.81
CLIP1-214ENST00000540539 PLAGL2Q9UPG8 496 aa10.01□□□□□ -0.81
CLIP1-214ENST00000540539 DNAJC16Q9Y2G8 782 aa10.01□□□□□ -0.81
CLIP1-214ENST00000540539 SEC23IPQ9Y6Y8 1000 aaKnown RBP10.01□□□□□ -0.81
CLIP1-214ENST00000540539 C4AP0C0L4 1744 aa10.01□□□□□ -0.81
CLIP1-214ENST00000540539 TRIM49BA6NDI0 452 aa10□□□□□ -0.81
CLIP1-214ENST00000540539 SOBPA7XYQ1 873 aa10□□□□□ -0.81
CLIP1-214ENST00000540539 KCNK3O14649 394 aa10□□□□□ -0.81
CLIP1-214ENST00000540539 BUD23O43709 281 aaKnown RBP10□□□□□ -0.81
CLIP1-214ENST00000540539 CHEK2O96017 543 aa10□□□□□ -0.81
CLIP1-214ENST00000540539 MYCP01106 439 aaPredicted RBP10□□□□□ -0.81
CLIP1-214ENST00000540539 UQCRBP14927 111 aa10□□□□□ -0.81
CLIP1-214ENST00000540539 CDH2P19022 906 aaPredicted RBP10□□□□□ -0.81
CLIP1-214ENST00000540539 TAC1P20366 129 aa10□□□□□ -0.81
CLIP1-214ENST00000540539 HNRNPH3P31942 346 aaKnown RBP10□□□□□ -0.81
CLIP1-214ENST00000540539 TOB1P50616 345 aaPredicted RBP10□□□□□ -0.81
CLIP1-214ENST00000540539 ASPHQ12797 758 aa10□□□□□ -0.81
CLIP1-214ENST00000540539 TCIRG1Q13488 830 aa10□□□□□ -0.81
CLIP1-214ENST00000540539 MOGSQ13724 837 aa10□□□□□ -0.81
CLIP1-214ENST00000540539 RASA2Q15283 850 aa10□□□□□ -0.81
CLIP1-214ENST00000540539 RABL6Q3YEC7 729 aaPredicted RBP10□□□□□ -0.81
CLIP1-214ENST00000540539 NIPAL1Q6NVV3 410 aa10□□□□□ -0.81
CLIP1-214ENST00000540539 RASSF3Q86WH2 238 aa10□□□□□ -0.81
CLIP1-214ENST00000540539 ACTRT1Q8TDG2 376 aa10□□□□□ -0.81
CLIP1-214ENST00000540539 STAMQ92783 540 aa10□□□□□ -0.81
CLIP1-214ENST00000540539 TRIM51Q9BSJ1 452 aa10□□□□□ -0.81
CLIP1-214ENST00000540539 TMEM109Q9BVC6 243 aa10□□□□□ -0.81
CLIP1-214ENST00000540539 OSBPL6Q9BZF3 934 aa10□□□□□ -0.81
CLIP1-214ENST00000540539 CSRNP2Q9H175 543 aa10□□□□□ -0.81
CLIP1-214ENST00000540539 TBC1D23Q9NUY8 699 aa10□□□□□ -0.81
CLIP1-214ENST00000540539 HACD3Q9P035 362 aa10□□□□□ -0.81
CLIP1-214ENST00000540539 NARFQ9UHQ1 456 aa10□□□□□ -0.81
CLIP1-214ENST00000540539 PPME1Q9Y570 386 aa10□□□□□ -0.81
CLIP1-214ENST00000540539 PCDHGA8Q9Y5G5 932 aa10□□□□□ -0.81
CLIP1-214ENST00000540539 BCORQ6W2J9 1755 aa10□□□□□ -0.81
CLIP1-214ENST00000540539 GOLGA8CPA6NN73 597 aa10□□□□□ -0.81
CLIP1-214ENST00000540539 NEURL1BA8MQ27 555 aa10□□□□□ -0.81
CLIP1-214ENST00000540539 RASGRF2O14827 1237 aa10□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms