RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 KRT17Q04695 432 aa18.06■□□□□ 0.48
USP28-208ENST00000540438 NLRP14Q86W24 1093 aa18.06■□□□□ 0.48
USP28-208ENST00000540438 RHPN2Q8IUC4 686 aa18.06■□□□□ 0.48
USP28-208ENST00000540438 ZNF473Q8WTR7 871 aaKnown RBP18.06■□□□□ 0.48
USP28-208ENST00000540438 GPRASP2Q96D09 838 aa18.06■□□□□ 0.48
USP28-208ENST00000540438 MFSD14AQ96MC6 490 aa18.06■□□□□ 0.48
USP28-208ENST00000540438 PCYT2Q99447 389 aa18.06■□□□□ 0.48
USP28-208ENST00000540438 GNA15P30679 374 aa18.05■□□□□ 0.48
USP28-208ENST00000540438 CDH8P55286 799 aa18.05■□□□□ 0.48
USP28-208ENST00000540438 RWDD2BP57060 319 aa18.05■□□□□ 0.48
USP28-208ENST00000540438 CLEC16AQ2KHT3 1053 aa18.05■□□□□ 0.48
USP28-208ENST00000540438 SMTNL2Q2TAL5 461 aa18.05■□□□□ 0.48
USP28-208ENST00000540438 GNPTABQ3T906 1256 aa18.05■□□□□ 0.48
USP28-208ENST00000540438 FBXO16Q8IX29 292 aaPredicted RBP18.05■□□□□ 0.48
USP28-208ENST00000540438 RNF149Q8NC42 400 aa18.05■□□□□ 0.48
USP28-208ENST00000540438 RAB17Q9H0T7 212 aa18.05■□□□□ 0.48
USP28-208ENST00000540438 TSPYL1Q9H0U9 437 aa18.05■□□□□ 0.48
USP28-208ENST00000540438 AS3MTQ9HBK9 375 aa18.05■□□□□ 0.48
USP28-208ENST00000540438 PDGFCQ9NRA1 345 aa18.05■□□□□ 0.48
USP28-208ENST00000540438 ADAM22Q9P0K1 906 aa18.05■□□□□ 0.48
USP28-208ENST00000540438 MYL6P60660 151 aa18.05■□□□□ 0.48
USP28-208ENST00000540438 CAPSQ13938 189 aa18.05■□□□□ 0.48
USP28-208ENST00000540438 KYNUQ16719 465 aa18.05■□□□□ 0.48
USP28-208ENST00000540438 KDM7AQ6ZMT4 941 aa18.05■□□□□ 0.48
USP28-208ENST00000540438 MCOLN2Q8IZK6 566 aa18.05■□□□□ 0.48
USP28-208ENST00000540438 MYCBPAPQ8TBZ2 947 aa18.05■□□□□ 0.48
USP28-208ENST00000540438 THOC1Q96FV9 657 aaKnown RBP18.05■□□□□ 0.48
USP28-208ENST00000540438 C9orf72Q96LT7 481 aa18.05■□□□□ 0.48
USP28-208ENST00000540438 FAM114A2Q9NRY5 505 aa18.05■□□□□ 0.48
USP28-208ENST00000540438 OATP04181 439 aa18.04■□□□□ 0.48
USP28-208ENST00000540438 NRLP54845 237 aa18.04■□□□□ 0.48
USP28-208ENST00000540438 Q3C1V9 767 aa18.04■□□□□ 0.48
USP28-208ENST00000540438 DENND2CQ68D51 928 aa18.04■□□□□ 0.48
USP28-208ENST00000540438 IWS1Q96ST2 819 aa18.04■□□□□ 0.48
USP28-208ENST00000540438 ARHGAP28Q9P2N2 729 aa18.04■□□□□ 0.48
USP28-208ENST00000540438 SYNGAP1Q96PV0 1343 aa18.04■□□□□ 0.48
USP28-208ENST00000540438 GOLGA8MH3BSY2 632 aa18.04■□□□□ 0.48
USP28-208ENST00000540438 CLCN3P51790 818 aa18.04■□□□□ 0.48
USP28-208ENST00000540438 XKR3Q5GH77 459 aa18.04■□□□□ 0.48
USP28-208ENST00000540438 KCNT1Q5JUK3 1230 aa18.04■□□□□ 0.48
USP28-208ENST00000540438 MREGQ8N565 214 aa18.04■□□□□ 0.48
USP28-208ENST00000540438 ANKRD42Q8N9B4 389 aa18.04■□□□□ 0.48
USP28-208ENST00000540438 TXNRD2Q9NNW7 524 aa18.04■□□□□ 0.48
USP28-208ENST00000540438 COL11A1P12107 1806 aaPredicted RBP18.04■□□□□ 0.48
USP28-208ENST00000540438 ATAD5Q96QE3 1844 aa18.04■□□□□ 0.48
USP28-208ENST00000540438 MYPNQ86TC9 1320 aa18.04■□□□□ 0.48
USP28-208ENST00000540438 GSTTP1A0A1W2PQM5 241 aa18.04■□□□□ 0.48
USP28-208ENST00000540438 SOWAHBA6NEL2 793 aa18.04■□□□□ 0.48
USP28-208ENST00000540438 SPATA31C2B4DYI2 1134 aa18.04■□□□□ 0.48
USP28-208ENST00000540438 INO80B-WBP1J3KQ70 363 aa18.04■□□□□ 0.48
USP28-208ENST00000540438 NOP14P78316 857 aaKnown RBP18.04■□□□□ 0.48
USP28-208ENST00000540438 ALCAMQ13740 583 aa18.04■□□□□ 0.48
USP28-208ENST00000540438 CYP4F22Q6NT55 531 aa18.04■□□□□ 0.48
USP28-208ENST00000540438 RBBP8NLQ8NC74 664 aaPredicted RBP18.04■□□□□ 0.48
USP28-208ENST00000540438 C1orf131Q8NDD1 294 aaKnown RBP18.04■□□□□ 0.48
USP28-208ENST00000540438 MCPH1Q8NEM0 835 aa18.04■□□□□ 0.48
USP28-208ENST00000540438 RAPGEF5Q92565 580 aa18.04■□□□□ 0.48
USP28-208ENST00000540438 INO80BQ9C086 356 aaPredicted RBP18.04■□□□□ 0.48
USP28-208ENST00000540438 GTF3C4Q9UKN8 822 aa18.04■□□□□ 0.48
USP28-208ENST00000540438 F8VP50 259 aa18.03■□□□□ 0.48
USP28-208ENST00000540438 BANF1O75531 89 aa18.03■□□□□ 0.48
USP28-208ENST00000540438 USP2O75604 605 aaPredicted RBP18.03■□□□□ 0.48
USP28-208ENST00000540438 GTF2H1P32780 548 aa18.03■□□□□ 0.48
USP28-208ENST00000540438 ADCY8P40145 1251 aa18.03■□□□□ 0.48
USP28-208ENST00000540438 STAT5BP51692 787 aa18.03■□□□□ 0.48
USP28-208ENST00000540438 C12orf56Q8IXR9 622 aa18.03■□□□□ 0.48
USP28-208ENST00000540438 CD101Q93033 1021 aa18.03■□□□□ 0.48
USP28-208ENST00000540438 HMGB1P1B2RPK0 211 aaPredicted RBP18.03■□□□□ 0.48
USP28-208ENST00000540438 CES2O00748 559 aa18.03■□□□□ 0.48
USP28-208ENST00000540438 CD19P15391 556 aa18.03■□□□□ 0.48
USP28-208ENST00000540438 NCOA4Q13772 614 aa18.03■□□□□ 0.48
USP28-208ENST00000540438 SIX1Q15475 284 aaPredicted RBP18.03■□□□□ 0.48
USP28-208ENST00000540438 GSTA5Q7RTV2 222 aa18.03■□□□□ 0.48
USP28-208ENST00000540438 PSPC1Q8WXF1 523 aaKnown RBP18.03■□□□□ 0.48
USP28-208ENST00000540438 ZNF408Q9H9D4 720 aa18.03■□□□□ 0.48
USP28-208ENST00000540438 PDLIM7Q9NR12 457 aa18.03■□□□□ 0.48
USP28-208ENST00000540438 TMEM51Q9NW97 253 aa18.03■□□□□ 0.48
USP28-208ENST00000540438 POLIQ9UNA4 740 aa18.03■□□□□ 0.48
USP28-208ENST00000540438 MYH9P35579 1960 aaKnown RBP18.03■□□□□ 0.48
USP28-208ENST00000540438 TLR3O15455 904 aaKnown RBP18.02■□□□□ 0.48
USP28-208ENST00000540438 EXTL3O43909 919 aa18.02■□□□□ 0.48
USP28-208ENST00000540438 C4BPAP04003 597 aaKnown RBP18.02■□□□□ 0.48
USP28-208ENST00000540438 SKOR1P84550 965 aa18.02■□□□□ 0.48
USP28-208ENST00000540438 KCTD17Q8N5Z5 321 aa18.02■□□□□ 0.48
USP28-208ENST00000540438 SAMD3Q8N6K7 520 aa18.02■□□□□ 0.48
USP28-208ENST00000540438 KAT2BQ92831 832 aa18.02■□□□□ 0.48
USP28-208ENST00000540438 EPN3Q9H201 632 aa18.02■□□□□ 0.48
USP28-208ENST00000540438 PCDHA3Q9Y5H8 950 aa18.02■□□□□ 0.48
USP28-208ENST00000540438 CAPN7Q9Y6W3 813 aa18.02■□□□□ 0.48
USP28-208ENST00000540438 RPS6KA5O75582 802 aa18.02■□□□□ 0.48
USP28-208ENST00000540438 MAP3K6O95382 1288 aa18.02■□□□□ 0.48
USP28-208ENST00000540438 IFNB1P01574 187 aa18.02■□□□□ 0.48
USP28-208ENST00000540438 CYP1A2P05177 515 aa18.02■□□□□ 0.48
USP28-208ENST00000540438 CHN1P15882 459 aa18.02■□□□□ 0.48
USP28-208ENST00000540438 PPP2R2AP63151 447 aa18.02■□□□□ 0.48
USP28-208ENST00000540438 ZACNQ401N2 412 aa18.02■□□□□ 0.48
USP28-208ENST00000540438 ANXA13P27216 316 aa18.01■□□□□ 0.47
USP28-208ENST00000540438 ALDH5A1P51649 535 aaPredicted RBP18.01■□□□□ 0.47
USP28-208ENST00000540438 CORO7P57737 925 aa18.01■□□□□ 0.47
USP28-208ENST00000540438 PLCB3Q01970 1234 aa18.01■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 65.2 ms