RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 EIF1ADQ8N9N8 165 aaKnown RBP11.48□□□□□ -0.57
CLIP1-213ENST00000540338 ELMO3Q96BJ8 720 aa11.48□□□□□ -0.57
CLIP1-213ENST00000540338 PAIP2Q9BPZ3 127 aaKnown RBP11.48□□□□□ -0.57
CLIP1-213ENST00000540338 MAF1Q9H063 256 aa11.48□□□□□ -0.57
CLIP1-213ENST00000540338 ACP6Q9NPH0 428 aa11.48□□□□□ -0.57
CLIP1-213ENST00000540338 RRP15Q9Y3B9 282 aaKnown RBP11.48□□□□□ -0.57
CLIP1-213ENST00000540338 RASGRF2O14827 1237 aa11.48□□□□□ -0.57
CLIP1-213ENST00000540338 OGTO15294 1046 aa11.48□□□□□ -0.57
CLIP1-213ENST00000540338 ASAP2O43150 1006 aa11.48□□□□□ -0.57
CLIP1-213ENST00000540338 SYF2O95926 243 aaKnown RBP11.48□□□□□ -0.57
CLIP1-213ENST00000540338 UBA1P22314 1058 aaKnown RBP11.48□□□□□ -0.57
CLIP1-213ENST00000540338 YARSP54577 528 aaKnown RBP11.48□□□□□ -0.57
CLIP1-213ENST00000540338 BSNDQ8WZ55 320 aa11.48□□□□□ -0.57
CLIP1-213ENST00000540338 RNF25Q96BH1 459 aaPredicted RBP11.48□□□□□ -0.57
CLIP1-213ENST00000540338 ARL8AQ96BM9 186 aa11.48□□□□□ -0.57
CLIP1-213ENST00000540338 NTPCRQ9BSD7 190 aaKnown RBP11.48□□□□□ -0.57
CLIP1-213ENST00000540338 CNOT10Q9H9A5 744 aaKnown RBP11.48□□□□□ -0.57
CLIP1-213ENST00000540338 ATP2C2O75185 946 aa11.47□□□□□ -0.57
CLIP1-213ENST00000540338 ADCY2Q08462 1091 aa11.47□□□□□ -0.57
CLIP1-213ENST00000540338 TSEN2Q8NCE0 465 aaKnown RBP11.47□□□□□ -0.57
CLIP1-213ENST00000540338 ZBTB45Q96K62 511 aaPredicted RBP11.47□□□□□ -0.57
CLIP1-213ENST00000540338 FIZ1Q96SL8 496 aa11.47□□□□□ -0.57
CLIP1-213ENST00000540338 STRIP2Q9ULQ0 834 aa11.47□□□□□ -0.57
CLIP1-213ENST00000540338 ADM5C9JUS6 153 aa11.47□□□□□ -0.57
CLIP1-213ENST00000540338 ADCY3O60266 1144 aa11.47□□□□□ -0.57
CLIP1-213ENST00000540338 TJP3O95049 919 aa11.47□□□□□ -0.57
CLIP1-213ENST00000540338 ATP2A2P16615 1042 aaKnown RBP11.47□□□□□ -0.57
CLIP1-213ENST00000540338 GLRA2P23416 452 aa11.47□□□□□ -0.57
CLIP1-213ENST00000540338 PPATQ06203 517 aa11.47□□□□□ -0.57
CLIP1-213ENST00000540338 MKRN3Q13064 507 aaKnown RBP11.47□□□□□ -0.57
CLIP1-213ENST00000540338 LY6KQ17RY6 165 aa11.47□□□□□ -0.57
CLIP1-213ENST00000540338 ATF7IP2Q5U623 682 aa11.47□□□□□ -0.57
CLIP1-213ENST00000540338 SPOPLQ6IQ16 392 aa11.47□□□□□ -0.57
CLIP1-213ENST00000540338 B3GNT9Q6UX72 402 aa11.47□□□□□ -0.57
CLIP1-213ENST00000540338 CCHCR1Q8TD31 782 aa11.47□□□□□ -0.57
CLIP1-213ENST00000540338 ASAP3Q8TDY4 903 aa11.47□□□□□ -0.57
CLIP1-213ENST00000540338 RSAD2Q8WXG1 361 aa11.47□□□□□ -0.57
CLIP1-213ENST00000540338 SEMA4DQ92854 862 aa11.47□□□□□ -0.57
CLIP1-213ENST00000540338 ASCC2Q9H1I8 757 aaPredicted RBP11.47□□□□□ -0.57
CLIP1-213ENST00000540338 RRM1P23921 792 aa11.47□□□□□ -0.57
CLIP1-213ENST00000540338 HSPA9P38646 679 aaKnown RBP11.47□□□□□ -0.57
CLIP1-213ENST00000540338 IRAK1P51617 712 aa11.47□□□□□ -0.57
CLIP1-213ENST00000540338 SNAPC2Q13487 334 aa11.47□□□□□ -0.57
CLIP1-213ENST00000540338 EFCAB12Q6NXP0 572 aa11.47□□□□□ -0.57
CLIP1-213ENST00000540338 OR2W6PQ8NHA6 318 aa11.47□□□□□ -0.57
CLIP1-213ENST00000540338 CYFIP2Q96F07 1278 aa11.47□□□□□ -0.57
CLIP1-213ENST00000540338 KREMEN1Q96MU8 473 aa11.47□□□□□ -0.57
CLIP1-213ENST00000540338 SLTMQ9NWH9 1034 aaKnown RBP eCLIP11.47□□□□□ -0.57
CLIP1-213ENST00000540338 HESX1Q9UBX0 185 aa11.47□□□□□ -0.57
CLIP1-213ENST00000540338 AFG3L2Q9Y4W6 797 aa11.47□□□□□ -0.57
CLIP1-213ENST00000540338 PPME1Q9Y570 386 aa11.47□□□□□ -0.57
CLIP1-213ENST00000540338 ATP8B3O60423 1300 aa11.47□□□□□ -0.57
CLIP1-213ENST00000540338 COILP38432 576 aaPredicted RBP11.46□□□□□ -0.57
CLIP1-213ENST00000540338 SLCO1A2P46721 670 aa11.46□□□□□ -0.57
CLIP1-213ENST00000540338 KCNJ1P48048 391 aa11.46□□□□□ -0.57
CLIP1-213ENST00000540338 MAGOHP61326 146 aaKnown RBP11.46□□□□□ -0.57
CLIP1-213ENST00000540338 ATP8B4Q8TF62 1192 aa11.46□□□□□ -0.57
CLIP1-213ENST00000540338 HEXIM2Q96MH2 286 aaKnown RBP11.46□□□□□ -0.57
CLIP1-213ENST00000540338 NIF3L1Q9GZT8 377 aa11.46□□□□□ -0.57
CLIP1-213ENST00000540338 ZNF112Q9UJU3 913 aa11.46□□□□□ -0.57
CLIP1-213ENST00000540338 CLTAP09496 248 aa11.46□□□□□ -0.57
CLIP1-213ENST00000540338 FMO1Q01740 532 aa11.46□□□□□ -0.57
CLIP1-213ENST00000540338 CAV1Q03135 178 aa11.46□□□□□ -0.57
CLIP1-213ENST00000540338 ZPBP2Q6X784 338 aa11.46□□□□□ -0.57
CLIP1-213ENST00000540338 LBX2Q6XYB7 198 aa11.46□□□□□ -0.57
CLIP1-213ENST00000540338 SBF2Q86WG5 1849 aa11.46□□□□□ -0.57
CLIP1-213ENST00000540338 ATL2Q8NHH9 583 aa11.46□□□□□ -0.57
CLIP1-213ENST00000540338 C18orf8Q96DM3 657 aa11.46□□□□□ -0.57
CLIP1-213ENST00000540338 FERMT1Q9BQL6 677 aa11.46□□□□□ -0.57
CLIP1-213ENST00000540338 MROH8Q9H579 483 aa11.46□□□□□ -0.57
CLIP1-213ENST00000540338 ERAP1Q9NZ08 941 aa11.46□□□□□ -0.57
CLIP1-213ENST00000540338 PSMA2P25787 234 aa11.46□□□□□ -0.58
CLIP1-213ENST00000540338 KRT17Q04695 432 aa11.46□□□□□ -0.58
CLIP1-213ENST00000540338 SLFN11Q7Z7L1 901 aa11.46□□□□□ -0.58
CLIP1-213ENST00000540338 MCOLN2Q8IZK6 566 aa11.46□□□□□ -0.58
CLIP1-213ENST00000540338 ZSWIM2Q8NEG5 633 aa11.46□□□□□ -0.58
CLIP1-213ENST00000540338 TMEM134Q9H6X4 195 aa11.46□□□□□ -0.58
CLIP1-213ENST00000540338 VPS37BQ9H9H4 285 aa11.46□□□□□ -0.58
CLIP1-213ENST00000540338 IRF6O14896 467 aa11.46□□□□□ -0.58
CLIP1-213ENST00000540338 MYCNP04198 464 aaPredicted RBP11.46□□□□□ -0.58
CLIP1-213ENST00000540338 ADSSP30520 456 aa11.46□□□□□ -0.58
CLIP1-213ENST00000540338 FNTAP49354 379 aa11.46□□□□□ -0.58
CLIP1-213ENST00000540338 TAP1Q03518 808 aa11.46□□□□□ -0.58
CLIP1-213ENST00000540338 WDR72Q3MJ13 1102 aa11.46□□□□□ -0.58
CLIP1-213ENST00000540338 PALB2Q86YC2 1186 aa11.46□□□□□ -0.58
CLIP1-213ENST00000540338 INTS9Q9NV88 658 aaKnown RBP11.46□□□□□ -0.58
CLIP1-213ENST00000540338 ARHGAP28Q9P2N2 729 aa11.46□□□□□ -0.58
CLIP1-213ENST00000540338 LTBP3Q9NS15 1303 aa11.45□□□□□ -0.58
CLIP1-213ENST00000540338 SGK1O00141 431 aa11.45□□□□□ -0.58
CLIP1-213ENST00000540338 MAGEB2O15479 319 aa11.45□□□□□ -0.58
CLIP1-213ENST00000540338 USP2O75604 605 aaPredicted RBP11.45□□□□□ -0.58
CLIP1-213ENST00000540338 ACSL3O95573 720 aa11.45□□□□□ -0.58
CLIP1-213ENST00000540338 SLC26A2P50443 739 aa11.45□□□□□ -0.58
CLIP1-213ENST00000540338 SLC8A3P57103 927 aa11.45□□□□□ -0.58
CLIP1-213ENST00000540338 PPP2R2AP63151 447 aa11.45□□□□□ -0.58
CLIP1-213ENST00000540338 LAMTOR4Q0VGL1 99 aa11.45□□□□□ -0.58
CLIP1-213ENST00000540338 C2CD6Q53TS8 623 aa11.45□□□□□ -0.58
CLIP1-213ENST00000540338 TREML2Q5T2D2 321 aa11.45□□□□□ -0.58
CLIP1-213ENST00000540338 SYDE1Q6ZW31 735 aaPredicted RBP11.45□□□□□ -0.58
CLIP1-213ENST00000540338 RASGEF1CQ8N431 466 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms