RNA–Protein interactions for RNA: ENST00000539662.1

HMGA2-209, Transcript of high mobility group AT-hook 2, humanhuman

TSL 3

Gene HMGA2, Length 485 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA2-209ENST00000539662 EFCAB13Q8IY85 973 aa11.66□□□□□ -0.54
HMGA2-209ENST00000539662 CEP57L1Q8IYX8 460 aa11.66□□□□□ -0.54
HMGA2-209ENST00000539662 KIAA0895Q8NCT3 520 aa11.66□□□□□ -0.54
HMGA2-209ENST00000539662 ENGASEQ8NFI3 743 aa11.66□□□□□ -0.54
HMGA2-209ENST00000539662 LNX1Q8TBB1 728 aaPredicted RBP11.66□□□□□ -0.54
HMGA2-209ENST00000539662 ZNF507Q8TCN5 953 aa11.66□□□□□ -0.54
HMGA2-209ENST00000539662 RIN2Q8WYP3 895 aaPredicted RBP11.66□□□□□ -0.54
HMGA2-209ENST00000539662 ERCC4Q92889 916 aaPredicted RBP11.66□□□□□ -0.54
HMGA2-209ENST00000539662 KIF12Q96FN5 646 aa11.66□□□□□ -0.54
HMGA2-209ENST00000539662 FAM213AQ9BRX8 229 aa11.66□□□□□ -0.54
HMGA2-209ENST00000539662 LRRC27Q9C0I9 530 aa11.66□□□□□ -0.54
HMGA2-209ENST00000539662 S1PR5Q9H228 398 aa11.66□□□□□ -0.54
HMGA2-209ENST00000539662 RPF1Q9H9Y2 349 aaKnown RBP11.66□□□□□ -0.54
HMGA2-209ENST00000539662 MAGEF1Q9HAY2 307 aa11.66□□□□□ -0.54
HMGA2-209ENST00000539662 PCDHB13Q9Y5F0 798 aa11.66□□□□□ -0.54
HMGA2-209ENST00000539662 PVALEFA0A1B0GWK0 134 aa11.65□□□□□ -0.54
HMGA2-209ENST00000539662 CLIC2O15247 247 aa11.65□□□□□ -0.54
HMGA2-209ENST00000539662 NCK2O43639 380 aa11.65□□□□□ -0.54
HMGA2-209ENST00000539662 NR1I2O75469 434 aa11.65□□□□□ -0.54
HMGA2-209ENST00000539662 URODP06132 367 aa11.65□□□□□ -0.54
HMGA2-209ENST00000539662 SCP2P22307 547 aa11.65□□□□□ -0.54
HMGA2-209ENST00000539662 TKTP29401 623 aaKnown RBP11.65□□□□□ -0.54
HMGA2-209ENST00000539662 CLCN4P51793 760 aa11.65□□□□□ -0.54
HMGA2-209ENST00000539662 PPP2R3AQ06190 1150 aa11.65□□□□□ -0.54
HMGA2-209ENST00000539662 CEP57Q86XR8 500 aa11.65□□□□□ -0.54
HMGA2-209ENST00000539662 PALB2Q86YC2 1186 aa11.65□□□□□ -0.54
HMGA2-209ENST00000539662 SYCP3Q8IZU3 236 aa11.65□□□□□ -0.54
HMGA2-209ENST00000539662 FMR1NBQ8N0W7 255 aaPredicted RBP11.65□□□□□ -0.54
HMGA2-209ENST00000539662 NOC3LQ8WTT2 800 aaKnown RBP11.65□□□□□ -0.54
HMGA2-209ENST00000539662 KHSRPQ92945 711 aaKnown RBP eCLIP11.65□□□□□ -0.543e-7■■■□□ 16
HMGA2-209ENST00000539662 PPP2R3CQ969Q6 453 aa11.65□□□□□ -0.54
HMGA2-209ENST00000539662 CDCA3Q99618 268 aaPredicted RBP11.65□□□□□ -0.54
HMGA2-209ENST00000539662 RXFP1Q9HBX9 757 aa11.65□□□□□ -0.54
HMGA2-209ENST00000539662 MRPL17Q9NRX2 175 aaKnown RBP11.65□□□□□ -0.54
HMGA2-209ENST00000539662 CD207Q9UJ71 328 aa11.65□□□□□ -0.54
HMGA2-209ENST00000539662 SCN1AP35498 2009 aa11.65□□□□□ -0.54
HMGA2-209ENST00000539662 SF3B1O75533 1304 aaKnown RBP eCLIP11.64□□□□□ -0.55
HMGA2-209ENST00000539662 PTPRJQ12913 1337 aa11.64□□□□□ -0.55
HMGA2-209ENST00000539662 TMEM189-UBE2V1I3L0A0 370 aa11.64□□□□□ -0.55
HMGA2-209ENST00000539662 TULP1O00294 542 aaPredicted RBP11.64□□□□□ -0.55
HMGA2-209ENST00000539662 SPTLC1O15269 473 aa11.64□□□□□ -0.55
HMGA2-209ENST00000539662 FGFR3P22607 806 aa11.64□□□□□ -0.55
HMGA2-209ENST00000539662 KLRC2P26717 231 aa11.64□□□□□ -0.55
HMGA2-209ENST00000539662 DPYDQ12882 1025 aa11.64□□□□□ -0.55
HMGA2-209ENST00000539662 AAK1Q2M2I8 961 aa11.64□□□□□ -0.55
HMGA2-209ENST00000539662 USP41Q3LFD5 358 aa11.64□□□□□ -0.55
HMGA2-209ENST00000539662 LMBRD2Q68DH5 695 aaPredicted RBP11.64□□□□□ -0.55
HMGA2-209ENST00000539662 SLFN12LQ6IEE8 588 aa11.64□□□□□ -0.55
HMGA2-209ENST00000539662 KIAA1841Q6NSI8 718 aa11.64□□□□□ -0.55
HMGA2-209ENST00000539662 CBWD2Q8IUF1 395 aa11.64□□□□□ -0.55
HMGA2-209ENST00000539662 SMRP1Q8NCR6 262 aa11.64□□□□□ -0.55
HMGA2-209ENST00000539662 UHRF1Q96T88 793 aaPredicted RBP11.64□□□□□ -0.55
HMGA2-209ENST00000539662 CLSTN3Q9BQT9 956 aa11.64□□□□□ -0.55
HMGA2-209ENST00000539662 TTPALQ9BTX7 342 aa11.64□□□□□ -0.55
HMGA2-209ENST00000539662 PLEKHA5Q9HAU0 1116 aa11.64□□□□□ -0.55
HMGA2-209ENST00000539662 EXOC7Q9UPT5 735 aa11.64□□□□□ -0.55
HMGA2-209ENST00000539662 USP15Q9Y4E8 981 aaPredicted RBP11.64□□□□□ -0.55
HMGA2-209ENST00000539662 C2orf16Q68DN1 1984 aa11.64□□□□□ -0.55
HMGA2-209ENST00000539662 MTCL1Q9Y4B5 1905 aaKnown RBP11.63□□□□□ -0.55
HMGA2-209ENST00000539662 NCOR1O75376 2440 aa11.63□□□□□ -0.55
HMGA2-209ENST00000539662 CARNS1A5YM72 827 aa11.63□□□□□ -0.55
HMGA2-209ENST00000539662 EIF3DO15371 548 aaKnown RBP eCLIP11.63□□□□□ -0.55
HMGA2-209ENST00000539662 RPN1P04843 607 aaKnown RBP11.63□□□□□ -0.55
HMGA2-209ENST00000539662 GARTP22102 1010 aa11.63□□□□□ -0.55
HMGA2-209ENST00000539662 LRPAP1P30533 357 aa11.63□□□□□ -0.55
HMGA2-209ENST00000539662 SMAD4Q13485 552 aaKnown RBP11.63□□□□□ -0.55
HMGA2-209ENST00000539662 PNOCQ13519 176 aa11.63□□□□□ -0.55
HMGA2-209ENST00000539662 ALCAMQ13740 583 aa11.63□□□□□ -0.55
HMGA2-209ENST00000539662 SMAD2Q15796 467 aaKnown RBP11.63□□□□□ -0.55
HMGA2-209ENST00000539662 PSMD5Q16401 504 aa11.63□□□□□ -0.55
HMGA2-209ENST00000539662 BMT2Q1RMZ1 405 aa11.63□□□□□ -0.55
HMGA2-209ENST00000539662 RARS2Q5T160 578 aaKnown RBP11.63□□□□□ -0.55
HMGA2-209ENST00000539662 SPATA1Q5VX52 437 aa11.63□□□□□ -0.55
HMGA2-209ENST00000539662 ARMCX5Q6P1M9 558 aa11.63□□□□□ -0.55
HMGA2-209ENST00000539662 RDH13Q8NBN7 331 aa11.63□□□□□ -0.55
HMGA2-209ENST00000539662 DDX27Q96GQ7 796 aaKnown RBP11.63□□□□□ -0.55
HMGA2-209ENST00000539662 UROC1Q96N76 676 aa11.63□□□□□ -0.55
HMGA2-209ENST00000539662 PYM1Q9BRP8 204 aaKnown RBP11.63□□□□□ -0.55
HMGA2-209ENST00000539662 GZF1Q9H116 711 aaPredicted RBP11.63□□□□□ -0.55
HMGA2-209ENST00000539662 TMEM206Q9H813 350 aa11.63□□□□□ -0.55
HMGA2-209ENST00000539662 PDE11AQ9HCR9 933 aa11.63□□□□□ -0.55
HMGA2-209ENST00000539662 AGPAT3Q9NRZ7 376 aa11.63□□□□□ -0.55
HMGA2-209ENST00000539662 SLC38A7Q9NVC3 462 aa11.63□□□□□ -0.55
HMGA2-209ENST00000539662 HSPBP1Q9NZL4 362 aa11.63□□□□□ -0.55
HMGA2-209ENST00000539662 USP25Q9UHP3 1055 aa11.63□□□□□ -0.55
HMGA2-209ENST00000539662 CIZ1Q9ULV3 898 aaPredicted RBP11.63□□□□□ -0.55
HMGA2-209ENST00000539662 MAPK8IP1Q9UQF2 711 aa11.63□□□□□ -0.55
HMGA2-209ENST00000539662 TIMM13Q9Y5L4 95 aaPredicted RBP11.63□□□□□ -0.55
HMGA2-209ENST00000539662 DOCK6Q96HP0 2047 aa11.63□□□□□ -0.55
HMGA2-209ENST00000539662 TSC2P49815 1807 aa11.63□□□□□ -0.55
HMGA2-209ENST00000539662 TGM5O43548 720 aa11.62□□□□□ -0.55
HMGA2-209ENST00000539662 EXTL3O43909 919 aa11.62□□□□□ -0.55
HMGA2-209ENST00000539662 RFPL2O75678 378 aa11.62□□□□□ -0.55
HMGA2-209ENST00000539662 RPL9P32969 192 aaKnown RBP11.62□□□□□ -0.55
HMGA2-209ENST00000539662 ABCD1P33897 745 aa11.62□□□□□ -0.55
HMGA2-209ENST00000539662 ANP32AP39687 249 aaKnown RBP11.62□□□□□ -0.55
HMGA2-209ENST00000539662 CYP2J2P51589 502 aa11.62□□□□□ -0.55
HMGA2-209ENST00000539662 CDR1P51861 262 aa11.62□□□□□ -0.55
HMGA2-209ENST00000539662 TMEM132DQ14C87 1099 aa11.62□□□□□ -0.55
HMGA2-209ENST00000539662 POSTNQ15063 836 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms