RNA–Protein interactions for RNA: ENST00000539522.2

CCDC42-202, Transcript of coiled-coil domain containing 42, humanhuman

TSL 1 (best) BASIC

Gene CCDC42, Length 1,087 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42-202ENST00000539522 DACH1Q9UI36 760 aa14.09□□□□□ -0.15
CCDC42-202ENST00000539522 ANO9A1A5B4 782 aa14.08□□□□□ -0.16
CCDC42-202ENST00000539522 MAPK13O15264 365 aa14.08□□□□□ -0.16
CCDC42-202ENST00000539522 SPTLC1O15269 473 aa14.08□□□□□ -0.16
CCDC42-202ENST00000539522 GRM6O15303 877 aa14.08□□□□□ -0.16
CCDC42-202ENST00000539522 LRRN2O75325 713 aa14.08□□□□□ -0.16
CCDC42-202ENST00000539522 IL18RAPO95256 599 aa14.08□□□□□ -0.16
CCDC42-202ENST00000539522 LRPAP1P30533 357 aa14.08□□□□□ -0.16
CCDC42-202ENST00000539522 PPP1R2P41236 205 aa14.08□□□□□ -0.16
CCDC42-202ENST00000539522 FKBP3Q00688 224 aaKnown RBP14.08□□□□□ -0.16
CCDC42-202ENST00000539522 PPP3CAQ08209 521 aa14.08□□□□□ -0.16
CCDC42-202ENST00000539522 ADGRE1Q14246 886 aa14.08□□□□□ -0.16
CCDC42-202ENST00000539522 C15orf39Q6ZRI6 1047 aa14.08□□□□□ -0.16
CCDC42-202ENST00000539522 RNF214Q8ND24 703 aa14.08□□□□□ -0.16
CCDC42-202ENST00000539522 SPPL3Q8TCT6 385 aa14.08□□□□□ -0.16
CCDC42-202ENST00000539522 RSPH1Q8WYR4 309 aa14.08□□□□□ -0.16
CCDC42-202ENST00000539522 CCDC127Q96BQ5 260 aa14.08□□□□□ -0.16
CCDC42-202ENST00000539522 TGS1Q96RS0 853 aaKnown RBP14.08□□□□□ -0.16
CCDC42-202ENST00000539522 RPS6KC1Q96S38 1066 aa14.08□□□□□ -0.16
CCDC42-202ENST00000539522 TMEM175Q9BSA9 504 aa14.08□□□□□ -0.16
CCDC42-202ENST00000539522 SLC28A3Q9HAS3 691 aa14.08□□□□□ -0.16
CCDC42-202ENST00000539522 KIAA1586Q9HCI6 787 aa14.08□□□□□ -0.16
CCDC42-202ENST00000539522 INTS13Q9NVM9 706 aa14.08□□□□□ -0.16
CCDC42-202ENST00000539522 PRG3Q9Y2Y8 225 aaPredicted RBP14.08□□□□□ -0.16
CCDC42-202ENST00000539522 DERAQ9Y315 318 aa14.08□□□□□ -0.16
CCDC42-202ENST00000539522 C2CD2Q9Y426 696 aa14.08□□□□□ -0.16
CCDC42-202ENST00000539522 PCDHGC5Q9Y5F6 944 aa14.08□□□□□ -0.16
CCDC42-202ENST00000539522 XIRP2A4UGR9 3374 aa14.08□□□□□ -0.16
CCDC42-202ENST00000539522 SMTNL1A8MU46 457 aa14.07□□□□□ -0.16
CCDC42-202ENST00000539522 PIRO00625 290 aa14.07□□□□□ -0.16
CCDC42-202ENST00000539522 VNN1O95497 513 aa14.07□□□□□ -0.16
CCDC42-202ENST00000539522 CST3P01034 146 aaPredicted RBP14.07□□□□□ -0.16
CCDC42-202ENST00000539522 C4BPAP04003 597 aaKnown RBP14.07□□□□□ -0.16
CCDC42-202ENST00000539522 TRIM49P0CI25 452 aa14.07□□□□□ -0.16
CCDC42-202ENST00000539522 TRIM49CP0CI26 452 aa14.07□□□□□ -0.16
CCDC42-202ENST00000539522 LAG3P18627 525 aa14.07□□□□□ -0.16
CCDC42-202ENST00000539522 CYP3A5P20815 502 aa14.07□□□□□ -0.16
CCDC42-202ENST00000539522 ERCC5P28715 1186 aaPredicted RBP14.07□□□□□ -0.16
CCDC42-202ENST00000539522 CTNNB1P35222 781 aa14.07□□□□□ -0.16
CCDC42-202ENST00000539522 RNASELQ05823 741 aaKnown RBP14.07□□□□□ -0.16
CCDC42-202ENST00000539522 STIM1Q13586 685 aa14.07□□□□□ -0.16
CCDC42-202ENST00000539522 TMEM132DQ14C87 1099 aa14.07□□□□□ -0.16
CCDC42-202ENST00000539522 CD302Q8IX05 232 aa14.07□□□□□ -0.16
CCDC42-202ENST00000539522 FAM186BQ8IYM0 893 aa14.07□□□□□ -0.16
CCDC42-202ENST00000539522 HASPINQ8TF76 798 aa14.07□□□□□ -0.16
CCDC42-202ENST00000539522 GDPD5Q8WTR4 605 aa14.07□□□□□ -0.16
CCDC42-202ENST00000539522 ARNTL2Q8WYA1 636 aa14.07□□□□□ -0.16
CCDC42-202ENST00000539522 ELMO3Q96BJ8 720 aa14.07□□□□□ -0.16
CCDC42-202ENST00000539522 IGSF21Q96ID5 467 aa14.07□□□□□ -0.16
CCDC42-202ENST00000539522 CGRRF1Q99675 332 aa14.07□□□□□ -0.16
CCDC42-202ENST00000539522 MKNK1Q9BUB5 465 aa14.07□□□□□ -0.16
CCDC42-202ENST00000539522 SRRTQ9BXP5 876 aaKnown RBP14.07□□□□□ -0.16
CCDC42-202ENST00000539522 GPR62Q9BZJ7 368 aa14.07□□□□□ -0.16
CCDC42-202ENST00000539522 MTMR12Q9C0I1 747 aa14.07□□□□□ -0.16
CCDC42-202ENST00000539522 CBX8Q9HC52 389 aa14.07□□□□□ -0.16
CCDC42-202ENST00000539522 ALG13Q9NP73 1137 aaKnown RBP14.07□□□□□ -0.16
CCDC42-202ENST00000539522 TMEM265A0A087WTH1 108 aa14.06□□□□□ -0.16
CCDC42-202ENST00000539522 H3BNC9 293 aa14.06□□□□□ -0.16
CCDC42-202ENST00000539522 TMEM189-UBE2V1I3L0A0 370 aa14.06□□□□□ -0.16
CCDC42-202ENST00000539522 CETN3O15182 167 aa14.06□□□□□ -0.16
CCDC42-202ENST00000539522 SLC16A3O15427 465 aaKnown RBP14.06□□□□□ -0.16
CCDC42-202ENST00000539522 FGF18O76093 207 aa14.06□□□□□ -0.16
CCDC42-202ENST00000539522 PSMC2P35998 433 aaKnown RBP14.06□□□□□ -0.16
CCDC42-202ENST00000539522 OR1G1P47890 313 aa14.06□□□□□ -0.16
CCDC42-202ENST00000539522 MARSP56192 900 aaKnown RBP14.06□□□□□ -0.16
CCDC42-202ENST00000539522 PLCB3Q01970 1234 aa14.06□□□□□ -0.16
CCDC42-202ENST00000539522 BFSP1Q12934 665 aa14.06□□□□□ -0.16
CCDC42-202ENST00000539522 HSP90AA2PQ14568 343 aaPredicted RBP14.06□□□□□ -0.16
CCDC42-202ENST00000539522 TDRD10Q5VZ19 366 aaKnown RBP14.06□□□□□ -0.16
CCDC42-202ENST00000539522 C9orf57Q5W0N0 161 aa14.06□□□□□ -0.16
CCDC42-202ENST00000539522 FILIP1Q7Z7B0 1213 aa14.06□□□□□ -0.16
CCDC42-202ENST00000539522 WDR49Q8IV35 697 aa14.06□□□□□ -0.16
CCDC42-202ENST00000539522 DHX40Q8IX18 779 aaKnown RBP14.06□□□□□ -0.16
CCDC42-202ENST00000539522 CSGALNACT2Q8N6G5 542 aa14.06□□□□□ -0.16
CCDC42-202ENST00000539522 TMC2Q8TDI7 906 aa14.06□□□□□ -0.16
CCDC42-202ENST00000539522 SLC35C1Q96A29 364 aa14.06□□□□□ -0.16
CCDC42-202ENST00000539522 B3GALT6Q96L58 329 aa14.06□□□□□ -0.16
CCDC42-202ENST00000539522 CEP63Q96MT8 703 aa14.06□□□□□ -0.16
CCDC42-202ENST00000539522 FAM161BQ96MY7 647 aa14.06□□□□□ -0.16
CCDC42-202ENST00000539522 ZNF558Q96NG5 402 aa14.06□□□□□ -0.16
CCDC42-202ENST00000539522 GUCD1Q96NT3 240 aa14.06□□□□□ -0.16
CCDC42-202ENST00000539522 SAMSN1Q9NSI8 373 aaKnown RBP14.06□□□□□ -0.16
CCDC42-202ENST00000539522 DPP3Q9NY33 737 aa14.06□□□□□ -0.16
CCDC42-202ENST00000539522 UBQLN1Q9UMX0 589 aaKnown RBP14.06□□□□□ -0.16
CCDC42-202ENST00000539522 BICDL2A1A5D9 508 aa14.05□□□□□ -0.16
CCDC42-202ENST00000539522 BECN2A8MW95 431 aa14.05□□□□□ -0.16
CCDC42-202ENST00000539522 I3L4J1 428 aa14.05□□□□□ -0.16
CCDC42-202ENST00000539522 PODXLO00592 558 aa14.05□□□□□ -0.16
CCDC42-202ENST00000539522 ALDH2P05091 517 aa14.05□□□□□ -0.16
CCDC42-202ENST00000539522 DLATP10515 647 aaKnown RBP14.05□□□□□ -0.16
CCDC42-202ENST00000539522 RPL13P26373 211 aaKnown RBP14.05□□□□□ -0.16
CCDC42-202ENST00000539522 IRS1P35568 1242 aa14.05□□□□□ -0.16
CCDC42-202ENST00000539522 BRCC3P46736 316 aa14.05□□□□□ -0.16
CCDC42-202ENST00000539522 AARSP49588 968 aaKnown RBP eCLIP14.05□□□□□ -0.16
CCDC42-202ENST00000539522 VAMP7P51809 220 aa14.05□□□□□ -0.16
CCDC42-202ENST00000539522 ERVFC1P60507 584 aa14.05□□□□□ -0.16
CCDC42-202ENST00000539522 TFAMQ00059 246 aaKnown RBP14.05□□□□□ -0.16
CCDC42-202ENST00000539522 IQCB1Q15051 598 aa14.05□□□□□ -0.16
CCDC42-202ENST00000539522 CDKAL1Q5VV42 579 aa14.05□□□□□ -0.16
CCDC42-202ENST00000539522 GPR153Q6NV75 609 aa14.05□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms