RNA–Protein interactions for RNA: ENST00000538995.1

RTN3-209, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 814 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-209ENST00000538995 WDR6Q9NNW5 1121 aaKnown RBP12.6□□□□□ -0.39
RTN3-209ENST00000538995 UBQLN1Q9UMX0 589 aaKnown RBP12.6□□□□□ -0.39
RTN3-209ENST00000538995 HCN4Q9Y3Q4 1203 aa12.6□□□□□ -0.39
RTN3-209ENST00000538995 STYXL1Q9Y6J8 313 aa12.6□□□□□ -0.39
RTN3-209ENST00000538995 TRIOO75962 3097 aa12.6□□□□□ -0.39
RTN3-209ENST00000538995 MYH11P35749 1972 aa12.6□□□□□ -0.39
RTN3-209ENST00000538995 A0A087X0B3 334 aa12.59□□□□□ -0.39
RTN3-209ENST00000538995 CCDC195A0A1B0GUA6 201 aa12.59□□□□□ -0.39
RTN3-209ENST00000538995 CUTAO60888 179 aa12.59□□□□□ -0.39
RTN3-209ENST00000538995 ZMYND10O75800 440 aa12.59□□□□□ -0.39
RTN3-209ENST00000538995 HNRNPA1P09651 372 aaKnown RBP eCLIP12.59□□□□□ -0.39
RTN3-209ENST00000538995 TKTP29401 623 aaKnown RBP12.59□□□□□ -0.39
RTN3-209ENST00000538995 LRPAP1P30533 357 aa12.59□□□□□ -0.39
RTN3-209ENST00000538995 RAB33AQ14088 237 aa12.59□□□□□ -0.39
RTN3-209ENST00000538995 ENOX2Q16206 610 aaKnown RBP12.59□□□□□ -0.39
RTN3-209ENST00000538995 SEZ6Q53EL9 994 aa12.59□□□□□ -0.39
RTN3-209ENST00000538995 SLC39A4Q6P5W5 647 aa12.59□□□□□ -0.39
RTN3-209ENST00000538995 TRIM67Q6ZTA4 783 aa12.59□□□□□ -0.39
RTN3-209ENST00000538995 DYMQ7RTS9 669 aa12.59□□□□□ -0.39
RTN3-209ENST00000538995 SMG7Q92540 1137 aaKnown RBP12.59□□□□□ -0.39
RTN3-209ENST00000538995 C18orf25Q96B23 403 aaPredicted RBP12.59□□□□□ -0.39
RTN3-209ENST00000538995 ZNF707Q96C28 371 aaPredicted RBP12.59□□□□□ -0.39
RTN3-209ENST00000538995 SUSD3Q96L08 255 aa12.59□□□□□ -0.39
RTN3-209ENST00000538995 MSTO1Q9BUK6 570 aa12.59□□□□□ -0.39
RTN3-209ENST00000538995 STRA6Q9BX79 667 aa12.59□□□□□ -0.39
RTN3-209ENST00000538995 MRPL44Q9H9J2 332 aaKnown RBP12.59□□□□□ -0.39
RTN3-209ENST00000538995 RPF1Q9H9Y2 349 aaKnown RBP12.59□□□□□ -0.39
RTN3-209ENST00000538995 EXOC7Q9UPT5 735 aa12.59□□□□□ -0.39
RTN3-209ENST00000538995 NUB1Q9Y5A7 615 aa12.59□□□□□ -0.39
RTN3-209ENST00000538995 CLUHO75153 1309 aa12.59□□□□□ -0.39
RTN3-209ENST00000538995 H7C4K7 107 aa12.58□□□□□ -0.4
RTN3-209ENST00000538995 RFPL2O75678 378 aa12.58□□□□□ -0.4
RTN3-209ENST00000538995 SP100P23497 879 aaPredicted RBP12.58□□□□□ -0.4
RTN3-209ENST00000538995 PAX3P23760 479 aa12.58□□□□□ -0.4
RTN3-209ENST00000538995 TNFSF9P41273 254 aa12.58□□□□□ -0.4
RTN3-209ENST00000538995 BRCC3P46736 316 aa12.58□□□□□ -0.4
RTN3-209ENST00000538995 SIGLEC14Q08ET2 396 aa12.58□□□□□ -0.4
RTN3-209ENST00000538995 MTMR3Q13615 1198 aa12.58□□□□□ -0.4
RTN3-209ENST00000538995 POSTNQ15063 836 aa12.58□□□□□ -0.4
RTN3-209ENST00000538995 ZBTB6Q15916 424 aa12.58□□□□□ -0.4
RTN3-209ENST00000538995 E2F4Q16254 413 aa12.58□□□□□ -0.4
RTN3-209ENST00000538995 UVSSAQ2YD98 709 aa12.58□□□□□ -0.4
RTN3-209ENST00000538995 ZC2HC1CQ53FD0 456 aaPredicted RBP12.58□□□□□ -0.4
RTN3-209ENST00000538995 L1TD1Q5T7N2 865 aaKnown RBP12.58□□□□□ -0.4
RTN3-209ENST00000538995 SLC8B1Q6J4K2 584 aa12.58□□□□□ -0.4
RTN3-209ENST00000538995 DENND4AQ7Z401 1863 aa12.58□□□□□ -0.4
RTN3-209ENST00000538995 BMP8AQ7Z5Y6 402 aa12.58□□□□□ -0.4
RTN3-209ENST00000538995 GLYCTKQ8IVS8 523 aa12.58□□□□□ -0.4
RTN3-209ENST00000538995 UBALD2Q8IYN6 164 aa12.58□□□□□ -0.4
RTN3-209ENST00000538995 APPL2Q8NEU8 664 aa12.58□□□□□ -0.4
RTN3-209ENST00000538995 KIF12Q96FN5 646 aa12.58□□□□□ -0.4
RTN3-209ENST00000538995 PRKD2Q9BZL6 878 aa12.58□□□□□ -0.4
RTN3-209ENST00000538995 MAGEF1Q9HAY2 307 aa12.58□□□□□ -0.4
RTN3-209ENST00000538995 TFIP11Q9UBB9 837 aaKnown RBP12.58□□□□□ -0.4
RTN3-209ENST00000538995 TUBGCP4Q9UGJ1 667 aa12.58□□□□□ -0.4
RTN3-209ENST00000538995 CPSF3Q9UKF6 684 aaKnown RBP12.58□□□□□ -0.4
RTN3-209ENST00000538995 CFAP45Q9UL16 551 aa12.58□□□□□ -0.4
RTN3-209ENST00000538995 SORCS3Q9UPU3 1222 aa12.58□□□□□ -0.4
RTN3-209ENST00000538995 DERAQ9Y315 318 aa12.58□□□□□ -0.4
RTN3-209ENST00000538995 PCDHB13Q9Y5F0 798 aa12.58□□□□□ -0.4
RTN3-209ENST00000538995 TMEM221A6NGB7 291 aa12.57□□□□□ -0.4
RTN3-209ENST00000538995 LACTBL1A8MY62 500 aa12.57□□□□□ -0.4
RTN3-209ENST00000538995 M0R296 226 aa12.57□□□□□ -0.4
RTN3-209ENST00000538995 ADAM12O43184 909 aa12.57□□□□□ -0.4
RTN3-209ENST00000538995 C8AP07357 584 aa12.57□□□□□ -0.4
RTN3-209ENST00000538995 SPATA31D3P0C874 917 aa12.57□□□□□ -0.4
RTN3-209ENST00000538995 IDEP14735 1019 aa12.57□□□□□ -0.4
RTN3-209ENST00000538995 IGFBP6P24592 240 aaPredicted RBP12.57□□□□□ -0.4
RTN3-209ENST00000538995 MCM4P33991 863 aa12.57□□□□□ -0.4
RTN3-209ENST00000538995 OR1D2P34982 312 aa12.57□□□□□ -0.4
RTN3-209ENST00000538995 AARSP49588 968 aaKnown RBP eCLIP12.57□□□□□ -0.4
RTN3-209ENST00000538995 AMPD3Q01432 767 aa12.57□□□□□ -0.4
RTN3-209ENST00000538995 VARS2Q5ST30 1063 aaKnown RBP12.57□□□□□ -0.4
RTN3-209ENST00000538995 ZBTB41Q5SVQ8 909 aa12.57□□□□□ -0.4
RTN3-209ENST00000538995 AXDND1Q5T1B0 1012 aaPredicted RBP12.57□□□□□ -0.4
RTN3-209ENST00000538995 ADALQ6DHV7 355 aa12.57□□□□□ -0.4
RTN3-209ENST00000538995 CNNM4Q6P4Q7 775 aa12.57□□□□□ -0.4
RTN3-209ENST00000538995 SPATA31D4Q6ZUB0 917 aa12.57□□□□□ -0.4
RTN3-209ENST00000538995 CCDC65Q8IXS2 484 aa12.57□□□□□ -0.4
RTN3-209ENST00000538995 PDILTQ8N807 584 aa12.57□□□□□ -0.4
RTN3-209ENST00000538995 IQUBQ8NA54 791 aa12.57□□□□□ -0.4
RTN3-209ENST00000538995 FEZF2Q8TBJ5 459 aa12.57□□□□□ -0.4
RTN3-209ENST00000538995 MFSD14AQ96MC6 490 aa12.57□□□□□ -0.4
RTN3-209ENST00000538995 ACCSQ96QU6 501 aa12.57□□□□□ -0.4
RTN3-209ENST00000538995 OXCT2Q9BYC2 517 aaPredicted RBP12.57□□□□□ -0.4
RTN3-209ENST00000538995 ASB7Q9H672 318 aa12.57□□□□□ -0.4
RTN3-209ENST00000538995 PIDD1Q9HB75 910 aa12.57□□□□□ -0.4
RTN3-209ENST00000538995 KBTBD4Q9NVX7 518 aa12.57□□□□□ -0.4
RTN3-209ENST00000538995 AGO2Q9UKV8 859 aaKnown RBP12.57□□□□□ -0.4
RTN3-209ENST00000538995 C2CD2Q9Y426 696 aa12.57□□□□□ -0.4
RTN3-209ENST00000538995 CDY1Q9Y6F8 540 aa12.57□□□□□ -0.4
RTN3-209ENST00000538995 TECTAO75443 2155 aa12.57□□□□□ -0.4
RTN3-209ENST00000538995 CITO14578 2027 aa12.57□□□□□ -0.4
RTN3-209ENST00000538995 PLXNA3P51805 1871 aa12.57□□□□□ -0.4
RTN3-209ENST00000538995 ANKRD63C9JTQ0 380 aa12.56□□□□□ -0.4
RTN3-209ENST00000538995 I3L4J1 428 aa12.56□□□□□ -0.4
RTN3-209ENST00000538995 M0QZQ0 153 aa12.56□□□□□ -0.4
RTN3-209ENST00000538995 TBC1D4O60343 1298 aa12.56□□□□□ -0.4
RTN3-209ENST00000538995 XYLBO75191 536 aa12.56□□□□□ -0.4
RTN3-209ENST00000538995 GCNT3O95395 438 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms