RNA–Protein interactions for RNA: ENST00000538686.6

USP3-203, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-203ENST00000538686 RAPH1Q70E73 1250 aa13.15□□□□□ -0.3
USP3-203ENST00000538686 ATG9AQ7Z3C6 839 aa13.15□□□□□ -0.3
USP3-203ENST00000538686 GUF1Q8N442 669 aaKnown RBP13.15□□□□□ -0.3
USP3-203ENST00000538686 ZNF280CQ8ND82 737 aa13.15□□□□□ -0.3
USP3-203ENST00000538686 DENND1AQ8TEH3 1009 aa13.15□□□□□ -0.3
USP3-203ENST00000538686 NEURL2Q9BR09 285 aa13.15□□□□□ -0.3
USP3-203ENST00000538686 PALMDQ9NP74 551 aa13.15□□□□□ -0.3
USP3-203ENST00000538686 RIC8AQ9NPQ8 531 aa13.15□□□□□ -0.3
USP3-203ENST00000538686 GID8Q9NWU2 228 aa13.15□□□□□ -0.3
USP3-203ENST00000538686 DENND2AQ9ULE3 1009 aa13.15□□□□□ -0.3
USP3-203ENST00000538686 LZTS1Q9Y250 596 aa13.15□□□□□ -0.3
USP3-203ENST00000538686 RABGAP1Q9Y3P9 1069 aa13.15□□□□□ -0.3
USP3-203ENST00000538686 N6AMT1Q9Y5N5 214 aa13.15□□□□□ -0.3
USP3-203ENST00000538686 KIF13BQ9NQT8 1826 aa13.15□□□□□ -0.3
USP3-203ENST00000538686 COL22A1Q8NFW1 1626 aaPredicted RBP13.15□□□□□ -0.3
USP3-203ENST00000538686 CHD4Q14839 1912 aa13.15□□□□□ -0.31
USP3-203ENST00000538686 LAD1O00515 517 aa13.14□□□□□ -0.31
USP3-203ENST00000538686 DDX3YO15523 660 aaKnown RBP13.14□□□□□ -0.31
USP3-203ENST00000538686 ACSL3O95573 720 aa13.14□□□□□ -0.31
USP3-203ENST00000538686 CDH2P19022 906 aaPredicted RBP13.14□□□□□ -0.31
USP3-203ENST00000538686 ENDOUP21128 410 aaKnown RBP13.14□□□□□ -0.31
USP3-203ENST00000538686 CTNNA2P26232 953 aa13.14□□□□□ -0.31
USP3-203ENST00000538686 MCM7P33993 719 aa13.14□□□□□ -0.31
USP3-203ENST00000538686 RXRGP48443 463 aa13.14□□□□□ -0.31
USP3-203ENST00000538686 EIF2B2P49770 351 aaKnown RBP13.14□□□□□ -0.31
USP3-203ENST00000538686 CDK9P50750 372 aaKnown RBP13.14□□□□□ -0.31
USP3-203ENST00000538686 CYP4A11Q02928 519 aa13.14□□□□□ -0.31
USP3-203ENST00000538686 POTEHQ6S545 545 aa13.14□□□□□ -0.31
USP3-203ENST00000538686 ZNF654Q8IZM8 581 aa13.14□□□□□ -0.31
USP3-203ENST00000538686 JADE3Q92613 823 aa13.14□□□□□ -0.31
USP3-203ENST00000538686 MRPL1Q9BYD6 325 aaKnown RBP13.14□□□□□ -0.31
USP3-203ENST00000538686 GOLPH3Q9H4A6 298 aa13.14□□□□□ -0.31
USP3-203ENST00000538686 RETREG1Q9H6L5 497 aa13.14□□□□□ -0.31
USP3-203ENST00000538686 STK17AQ9UEE5 414 aa13.14□□□□□ -0.31
USP3-203ENST00000538686 ACEP12821 1306 aa13.14□□□□□ -0.31
USP3-203ENST00000538686 ADCY6O43306 1168 aa13.14□□□□□ -0.31
USP3-203ENST00000538686 KCNQ3O43525 872 aa13.14□□□□□ -0.31
USP3-203ENST00000538686 PRKCIP41743 596 aa13.14□□□□□ -0.31
USP3-203ENST00000538686 VCPP55072 806 aaKnown RBP13.14□□□□□ -0.31
USP3-203ENST00000538686 CREB5Q02930 508 aa13.14□□□□□ -0.31
USP3-203ENST00000538686 C16orf72Q14CZ0 275 aa13.14□□□□□ -0.31
USP3-203ENST00000538686 CNGA3Q16281 694 aa13.14□□□□□ -0.31
USP3-203ENST00000538686 EXOC3L4Q17RC7 722 aa13.14□□□□□ -0.31
USP3-203ENST00000538686 ANO5Q75V66 913 aa13.14□□□□□ -0.31
USP3-203ENST00000538686 OTOAQ7RTW8 1153 aa13.14□□□□□ -0.31
USP3-203ENST00000538686 CCDC25Q86WR0 208 aa13.14□□□□□ -0.31
USP3-203ENST00000538686 METTL25Q8N6Q8 603 aa13.14□□□□□ -0.31
USP3-203ENST00000538686 U2AF1L4Q8WU68 220 aaKnown RBP13.14□□□□□ -0.31
USP3-203ENST00000538686 AK8Q96MA6 479 aa13.14□□□□□ -0.31
USP3-203ENST00000538686 MYD88Q99836 296 aa13.14□□□□□ -0.31
USP3-203ENST00000538686 HAUS8Q9BT25 410 aa13.14□□□□□ -0.31
USP3-203ENST00000538686 NAPBQ9H115 298 aa13.14□□□□□ -0.31
USP3-203ENST00000538686 S100A14Q9HCY8 104 aa13.14□□□□□ -0.31
USP3-203ENST00000538686 NENFQ9UMX5 172 aa13.14□□□□□ -0.31
USP3-203ENST00000538686 NAALADL1Q9UQQ1 740 aa13.14□□□□□ -0.31
USP3-203ENST00000538686 NR2E1Q9Y466 385 aa13.14□□□□□ -0.31
USP3-203ENST00000538686 NCANO14594 1321 aa13.13□□□□□ -0.31
USP3-203ENST00000538686 TMEM114B3SHH9 223 aa13.13□□□□□ -0.31
USP3-203ENST00000538686 TNFRSF10AO00220 468 aa13.13□□□□□ -0.31
USP3-203ENST00000538686 PCSK6P29122 969 aa13.13□□□□□ -0.31
USP3-203ENST00000538686 RPS3AP61247 264 aaKnown RBP13.13□□□□□ -0.31
USP3-203ENST00000538686 CDK16Q00536 496 aa13.13□□□□□ -0.31
USP3-203ENST00000538686 PTK2Q05397 1052 aa13.13□□□□□ -0.31
USP3-203ENST00000538686 ZBTB16Q05516 673 aa13.13□□□□□ -0.31
USP3-203ENST00000538686 SFT2D3Q587I9 215 aa13.13□□□□□ -0.31
USP3-203ENST00000538686 DCDC5Q6ZRR9 648 aa13.13□□□□□ -0.31
USP3-203ENST00000538686 CCDC85AQ96PX6 553 aaPredicted RBP13.13□□□□□ -0.31
USP3-203ENST00000538686 GPATCH1Q9BRR8 931 aaKnown RBP13.13□□□□□ -0.31
USP3-203ENST00000538686 GRIP2Q9C0E4 1043 aa13.13□□□□□ -0.31
USP3-203ENST00000538686 ERVK-5Q9HDB9 667 aa13.13□□□□□ -0.31
USP3-203ENST00000538686 SLCO1B3Q9NPD5 702 aa13.13□□□□□ -0.31
USP3-203ENST00000538686 PIH1D3Q9NQM4 214 aaKnown RBP13.13□□□□□ -0.31
USP3-203ENST00000538686 COL4A3BPQ9Y5P4 624 aa13.13□□□□□ -0.31
USP3-203ENST00000538686 TECPR2O15040 1411 aa13.13□□□□□ -0.31
USP3-203ENST00000538686 MIF4GDA9UHW6 222 aaKnown RBP13.12□□□□□ -0.31
USP3-203ENST00000538686 H3BNX3 289 aa13.12□□□□□ -0.31
USP3-203ENST00000538686 CD48P09326 243 aa13.12□□□□□ -0.31
USP3-203ENST00000538686 LMNB1P20700 586 aa13.12□□□□□ -0.31
USP3-203ENST00000538686 HMOX2P30519 316 aa13.12□□□□□ -0.31
USP3-203ENST00000538686 PCYT1AP49585 367 aa13.12□□□□□ -0.31
USP3-203ENST00000538686 TUBA1BP68363 451 aa13.12□□□□□ -0.31
USP3-203ENST00000538686 DLG1Q12959 904 aa13.12□□□□□ -0.31
USP3-203ENST00000538686 APOFQ13790 326 aa13.12□□□□□ -0.31
USP3-203ENST00000538686 UBE3CQ15386 1083 aa13.12□□□□□ -0.31
USP3-203ENST00000538686 CYP1B1Q16678 543 aa13.12□□□□□ -0.31
USP3-203ENST00000538686 UBAP2Q5T6F2 1119 aaKnown RBP13.12□□□□□ -0.31
USP3-203ENST00000538686 C1orf146Q5VVC0 180 aa13.12□□□□□ -0.31
USP3-203ENST00000538686 CCDC137Q6PK04 289 aaKnown RBP13.12□□□□□ -0.31
USP3-203ENST00000538686 LRRC55Q6ZSA7 311 aa13.12□□□□□ -0.31
USP3-203ENST00000538686 TUBA1AQ71U36 451 aa13.12□□□□□ -0.31
USP3-203ENST00000538686 MIER3Q7Z3K6 550 aa13.12□□□□□ -0.31
USP3-203ENST00000538686 GPIHBP1Q8IV16 184 aa13.12□□□□□ -0.31
USP3-203ENST00000538686 C4orf32Q8N8J7 132 aa13.12□□□□□ -0.31
USP3-203ENST00000538686 KIAA0895Q8NCT3 520 aa13.12□□□□□ -0.31
USP3-203ENST00000538686 MTBPQ96DY7 904 aa13.12□□□□□ -0.31
USP3-203ENST00000538686 PANX3Q96QZ0 392 aa13.12□□□□□ -0.31
USP3-203ENST00000538686 RTFDC1Q9BY42 306 aaPredicted RBP13.12□□□□□ -0.31
USP3-203ENST00000538686 NPHS2Q9NP85 383 aa13.12□□□□□ -0.31
USP3-203ENST00000538686 MTUS1Q9ULD2 1270 aa13.12□□□□□ -0.31
USP3-203ENST00000538686 PPM1HQ9ULR3 514 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms