RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 GAS7O60861 476 aa10.19□□□□□ -0.78
USP28-205ENST00000537706 KIF4AO95239 1232 aa10.19□□□□□ -0.78
USP28-205ENST00000537706 CFIP05156 583 aa10.19□□□□□ -0.78
USP28-205ENST00000537706 FTH1P19P0C7X4 201 aa10.19□□□□□ -0.78
USP28-205ENST00000537706 TEAD2Q15562 447 aa10.19□□□□□ -0.78
USP28-205ENST00000537706 PRR16Q569H4 304 aa10.19□□□□□ -0.78
USP28-205ENST00000537706 PKN3Q6P5Z2 889 aa10.19□□□□□ -0.78
USP28-205ENST00000537706 POTEHQ6S545 545 aa10.19□□□□□ -0.78
USP28-205ENST00000537706 SYT13Q7L8C5 426 aa10.19□□□□□ -0.78
USP28-205ENST00000537706 MIER3Q7Z3K6 550 aa10.19□□□□□ -0.78
USP28-205ENST00000537706 KRT25Q7Z3Z0 450 aa10.19□□□□□ -0.78
USP28-205ENST00000537706 TCEAL8Q8IYN2 117 aa10.19□□□□□ -0.78
USP28-205ENST00000537706 SPACA7Q96KW9 195 aa10.19□□□□□ -0.78
USP28-205ENST00000537706 DCBLD2Q96PD2 775 aa10.19□□□□□ -0.78
USP28-205ENST00000537706 TEKT3Q9BXF9 490 aa10.19□□□□□ -0.78
USP28-205ENST00000537706 GTSE1Q9NYZ3 720 aa10.19□□□□□ -0.78
USP28-205ENST00000537706 PPME1Q9Y570 386 aa10.19□□□□□ -0.78
USP28-205ENST00000537706 SALL3Q9BXA9 1300 aa10.18□□□□□ -0.78
USP28-205ENST00000537706 F5P12259 2224 aa10.18□□□□□ -0.78
USP28-205ENST00000537706 WDR81Q562E7 1941 aa10.18□□□□□ -0.78
USP28-205ENST00000537706 TICRRQ7Z2Z1 1910 aa10.18□□□□□ -0.78
USP28-205ENST00000537706 BAZ2BQ9UIF8 2168 aaKnown RBP10.18□□□□□ -0.78
USP28-205ENST00000537706 hCG_1642624A0A1W2PR95 340 aa10.18□□□□□ -0.78
USP28-205ENST00000537706 TNFRSF10BO14763 440 aa10.18□□□□□ -0.78
USP28-205ENST00000537706 DKC1O60832 514 aaKnown RBP eCLIP10.18□□□□□ -0.78
USP28-205ENST00000537706 RNF40O75150 1001 aa10.18□□□□□ -0.78
USP28-205ENST00000537706 DRD1P21728 446 aa10.18□□□□□ -0.78
USP28-205ENST00000537706 FGFR3P22607 806 aa10.18□□□□□ -0.78
USP28-205ENST00000537706 IRX6P78412 446 aaPredicted RBP10.18□□□□□ -0.78
USP28-205ENST00000537706 DMC1Q14565 340 aa10.18□□□□□ -0.78
USP28-205ENST00000537706 TMEM196Q5HYL7 178 aa10.18□□□□□ -0.78
USP28-205ENST00000537706 SLC23A3Q6PIS1 610 aa10.18□□□□□ -0.78
USP28-205ENST00000537706 MAFFQ9ULX9 164 aa10.18□□□□□ -0.78
USP28-205ENST00000537706 SLC6A14Q9UN76 642 aa10.18□□□□□ -0.78
USP28-205ENST00000537706 INVSQ9Y283 1065 aa10.18□□□□□ -0.78
USP28-205ENST00000537706 INSL5Q9Y5Q6 135 aa10.18□□□□□ -0.78
USP28-205ENST00000537706 H7C4K7 107 aa10.17□□□□□ -0.78
USP28-205ENST00000537706 THP07101 528 aa10.17□□□□□ -0.78
USP28-205ENST00000537706 AKAP5P24588 427 aa10.17□□□□□ -0.78
USP28-205ENST00000537706 HOXD12P35452 270 aa10.17□□□□□ -0.78
USP28-205ENST00000537706 CCR2P41597 374 aa10.17□□□□□ -0.78
USP28-205ENST00000537706 ARPP19P56211 112 aa10.17□□□□□ -0.78
USP28-205ENST00000537706 PLD1Q13393 1074 aa10.17□□□□□ -0.78
USP28-205ENST00000537706 BYSLQ13895 437 aaKnown RBP10.17□□□□□ -0.78
USP28-205ENST00000537706 TFDP1Q14186 410 aa10.17□□□□□ -0.78
USP28-205ENST00000537706 UGCGQ16739 394 aa10.17□□□□□ -0.78
USP28-205ENST00000537706 ARHGAP15Q53QZ3 475 aa10.17□□□□□ -0.78
USP28-205ENST00000537706 ANKRD45Q5TZF3 282 aa10.17□□□□□ -0.78
USP28-205ENST00000537706 CCDC82Q8N4S0 544 aa10.17□□□□□ -0.78
USP28-205ENST00000537706 PIP4K2CQ8TBX8 421 aa10.17□□□□□ -0.78
USP28-205ENST00000537706 RIT2Q99578 217 aa10.17□□□□□ -0.78
USP28-205ENST00000537706 NXF3Q9H4D5 531 aaKnown RBP10.17□□□□□ -0.78
USP28-205ENST00000537706 PPP4R2Q9NY27 417 aa10.17□□□□□ -0.78
USP28-205ENST00000537706 KLK14Q9P0G3 267 aa10.17□□□□□ -0.78
USP28-205ENST00000537706 TRDMT1O14717 391 aaKnown RBP10.17□□□□□ -0.78
USP28-205ENST00000537706 TSPAN1O60635 241 aa10.17□□□□□ -0.78
USP28-205ENST00000537706 ALDH1A2O94788 518 aa10.17□□□□□ -0.78
USP28-205ENST00000537706 FGF19O95750 216 aa10.17□□□□□ -0.78
USP28-205ENST00000537706 SYPP08247 313 aa10.17□□□□□ -0.78
USP28-205ENST00000537706 ATF2P15336 505 aa10.17□□□□□ -0.78
USP28-205ENST00000537706 ROR1Q01973 937 aa10.17□□□□□ -0.78
USP28-205ENST00000537706 SLC14A1Q13336 389 aa10.17□□□□□ -0.78
USP28-205ENST00000537706 DUOXA1Q1HG43 343 aa10.17□□□□□ -0.78
USP28-205ENST00000537706 JAKMIP3Q5VZ66 844 aa10.17□□□□□ -0.78
USP28-205ENST00000537706 TPGS2Q68CL5 300 aa10.17□□□□□ -0.78
USP28-205ENST00000537706 WWC2Q6AWC2 1192 aa10.17□□□□□ -0.78
USP28-205ENST00000537706 FSTL4Q6MZW2 842 aa10.17□□□□□ -0.78
USP28-205ENST00000537706 HS6ST3Q8IZP7 471 aa10.17□□□□□ -0.78
USP28-205ENST00000537706 CMTR1Q8N1G2 835 aaKnown RBP10.17□□□□□ -0.78
USP28-205ENST00000537706 RNF149Q8NC42 400 aa10.17□□□□□ -0.78
USP28-205ENST00000537706 BPIFB1Q8TDL5 484 aa10.17□□□□□ -0.78
USP28-205ENST00000537706 PRPF31Q8WWY3 499 aaKnown RBP10.17□□□□□ -0.78
USP28-205ENST00000537706 CPB2Q96IY4 423 aa10.17□□□□□ -0.78
USP28-205ENST00000537706 SPAG17Q6Q759 2223 aa10.16□□□□□ -0.78
USP28-205ENST00000537706 TEX51A0A1B0GUA7 166 aa10.16□□□□□ -0.78
USP28-205ENST00000537706 INO80B-WBP1J3KQ70 363 aa10.16□□□□□ -0.78
USP28-205ENST00000537706 NPTXRO95502 500 aa10.16□□□□□ -0.78
USP28-205ENST00000537706 GJA1P17302 382 aa10.16□□□□□ -0.78
USP28-205ENST00000537706 RFC5P40937 340 aa10.16□□□□□ -0.78
USP28-205ENST00000537706 MCM2P49736 904 aa10.16□□□□□ -0.78
USP28-205ENST00000537706 EPHA5P54756 1037 aa10.16□□□□□ -0.78
USP28-205ENST00000537706 FAM193AP78312 1265 aa10.16□□□□□ -0.78
USP28-205ENST00000537706 CYP4F3Q08477 520 aa10.16□□□□□ -0.78
USP28-205ENST00000537706 LAMTOR4Q0VGL1 99 aa10.16□□□□□ -0.78
USP28-205ENST00000537706 PSMD2Q13200 908 aa10.16□□□□□ -0.78
USP28-205ENST00000537706 LRCH2Q5VUJ6 765 aa10.16□□□□□ -0.78
USP28-205ENST00000537706 LYSMD4Q5XG99 296 aa10.16□□□□□ -0.78
USP28-205ENST00000537706 SLC27A1Q6PCB7 646 aa10.16□□□□□ -0.78
USP28-205ENST00000537706 TOGARAM2Q6ZUX3 1019 aa10.16□□□□□ -0.78
USP28-205ENST00000537706 ARID3BQ8IVW6 561 aaPredicted RBP10.16□□□□□ -0.78
USP28-205ENST00000537706 PLEKHM2Q8IWE5 1019 aa10.16□□□□□ -0.78
USP28-205ENST00000537706 RPLP0P6Q8NHW5 317 aa10.16□□□□□ -0.78
USP28-205ENST00000537706 CRELD1Q96HD1 420 aa10.16□□□□□ -0.78
USP28-205ENST00000537706 MTA3Q9BTC8 594 aa10.16□□□□□ -0.78
USP28-205ENST00000537706 MINDY3Q9H8M7 445 aa10.16□□□□□ -0.78
USP28-205ENST00000537706 SNTG2Q9NY99 539 aa10.16□□□□□ -0.78
USP28-205ENST00000537706 CIZ1Q9ULV3 898 aaPredicted RBP10.16□□□□□ -0.78
USP28-205ENST00000537706 MYH9P35579 1960 aaKnown RBP10.16□□□□□ -0.78
USP28-205ENST00000537706 NRG2O14511 850 aaPredicted RBP10.15□□□□□ -0.78
USP28-205ENST00000537706 ZZEF1O43149 2961 aa10.15□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms