RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 TAS1R3Q7RTX0 852 aa16.1■□□□□ 0.17
VPS28-215ENST00000531924 C3orf58Q8NDZ4 430 aa16.1■□□□□ 0.17
VPS28-215ENST00000531924 TMEM161BQ8NDZ6 487 aa16.1■□□□□ 0.17
VPS28-215ENST00000531924 ZNF461Q8TAF7 563 aa16.1■□□□□ 0.17
VPS28-215ENST00000531924 ZBTB45Q96K62 511 aaPredicted RBP16.1■□□□□ 0.17
VPS28-215ENST00000531924 AK8Q96MA6 479 aa16.1■□□□□ 0.17
VPS28-215ENST00000531924 ZMAT2Q96NC0 199 aaKnown RBP16.1■□□□□ 0.17
VPS28-215ENST00000531924 PNMA5Q96PV4 448 aa16.1■□□□□ 0.17
VPS28-215ENST00000531924 CNTN3Q9P232 1028 aa16.1■□□□□ 0.17
VPS28-215ENST00000531924 KCNH3Q9ULD8 1083 aa16.1■□□□□ 0.17
VPS28-215ENST00000531924 PROB1E7EW31 1015 aa16.09■□□□□ 0.17
VPS28-215ENST00000531924 MAPTP10636 758 aaKnown RBP16.09■□□□□ 0.17
VPS28-215ENST00000531924 PROZP22891 400 aa16.09■□□□□ 0.17
VPS28-215ENST00000531924 NBL1P41271 181 aa16.09■□□□□ 0.17
VPS28-215ENST00000531924 DHX8Q14562 1220 aaKnown RBP16.09■□□□□ 0.17
VPS28-215ENST00000531924 RSPO2Q6UXX9 243 aaPredicted RBP16.09■□□□□ 0.17
VPS28-215ENST00000531924 FRMD5Q7Z6J6 570 aa16.09■□□□□ 0.17
VPS28-215ENST00000531924 APPL2Q8NEU8 664 aa16.09■□□□□ 0.17
VPS28-215ENST00000531924 ITFG1Q8TB96 612 aa16.09■□□□□ 0.17
VPS28-215ENST00000531924 NKD2Q969F2 451 aaPredicted RBP16.09■□□□□ 0.17
VPS28-215ENST00000531924 C18orf25Q96B23 403 aaPredicted RBP16.09■□□□□ 0.17
VPS28-215ENST00000531924 CYP4F11Q9HBI6 524 aa16.09■□□□□ 0.17
VPS28-215ENST00000531924 SLC2A4RGQ9NR83 387 aa16.09■□□□□ 0.17
VPS28-215ENST00000531924 HCFC1R1Q9NWW0 138 aa16.09■□□□□ 0.17
VPS28-215ENST00000531924 SIT1Q9Y3P8 196 aa16.09■□□□□ 0.17
VPS28-215ENST00000531924 CACNA1HO95180 2353 aa16.09■□□□□ 0.17
VPS28-215ENST00000531924 NPHP3-ACAD11A0A0J9YXS1 232 aa16.08■□□□□ 0.16
VPS28-215ENST00000531924 SLC26A4O43511 780 aa16.08■□□□□ 0.16
VPS28-215ENST00000531924 FAM13AO94988 1023 aa16.08■□□□□ 0.16
VPS28-215ENST00000531924 BMP15O95972 392 aa16.08■□□□□ 0.16
VPS28-215ENST00000531924 PTPN2P17706 415 aa16.08■□□□□ 0.16
VPS28-215ENST00000531924 LIG4P49917 911 aa16.08■□□□□ 0.16
VPS28-215ENST00000531924 SLC12A3P55017 1021 aa16.08■□□□□ 0.16
VPS28-215ENST00000531924 GPC5P78333 572 aa16.08■□□□□ 0.16
VPS28-215ENST00000531924 PFKPQ01813 784 aa16.08■□□□□ 0.16
VPS28-215ENST00000531924 ROR1Q01973 937 aa16.08■□□□□ 0.16
VPS28-215ENST00000531924 CACNB1Q02641 598 aaPredicted RBP16.08■□□□□ 0.16
VPS28-215ENST00000531924 CTXN3Q4LDR2 81 aa16.08■□□□□ 0.16
VPS28-215ENST00000531924 SEZ6Q53EL9 994 aa16.08■□□□□ 0.16
VPS28-215ENST00000531924 SLC8B1Q6J4K2 584 aa16.08■□□□□ 0.16
VPS28-215ENST00000531924 PHLDB3Q6NSJ2 640 aa16.08■□□□□ 0.16
VPS28-215ENST00000531924 CD300LGQ6UXG3 332 aa16.08■□□□□ 0.16
VPS28-215ENST00000531924 ELMOD1Q8N336 334 aa16.08■□□□□ 0.16
VPS28-215ENST00000531924 ING5Q8WYH8 240 aa16.08■□□□□ 0.16
VPS28-215ENST00000531924 FGF14Q92915 247 aa16.08■□□□□ 0.16
VPS28-215ENST00000531924 ZHX3Q9H4I2 956 aa16.08■□□□□ 0.16
VPS28-215ENST00000531924 DNMT3BQ9UBC3 853 aaKnown RBP16.08■□□□□ 0.16
VPS28-215ENST00000531924 GTF3C5Q9Y5Q8 519 aaPredicted RBP16.08■□□□□ 0.16
VPS28-215ENST00000531924 RHOP08100 348 aa16.07■□□□□ 0.16
VPS28-215ENST00000531924 CLTAP09496 248 aa16.07■□□□□ 0.16
VPS28-215ENST00000531924 SCP2P22307 547 aa16.07■□□□□ 0.16
VPS28-215ENST00000531924 MCL1Q07820 350 aa16.07■□□□□ 0.16
VPS28-215ENST00000531924 KYAT1Q16773 422 aa16.07■□□□□ 0.16
VPS28-215ENST00000531924 SLC10A6Q3KNW5 377 aa16.07■□□□□ 0.16
VPS28-215ENST00000531924 TMEM119Q4V9L6 283 aa16.07■□□□□ 0.16
VPS28-215ENST00000531924 ZNF280DQ6N043 979 aa16.07■□□□□ 0.16
VPS28-215ENST00000531924 HAUS6Q7Z4H7 955 aa16.07■□□□□ 0.16
VPS28-215ENST00000531924 GPBP1Q86WP2 473 aa16.07■□□□□ 0.16
VPS28-215ENST00000531924 NPAS3Q8IXF0 933 aa16.07■□□□□ 0.16
VPS28-215ENST00000531924 MYCT1Q8N699 235 aa16.07■□□□□ 0.16
VPS28-215ENST00000531924 KCNG4Q8TDN1 519 aa16.07■□□□□ 0.16
VPS28-215ENST00000531924 MCRS1Q96EZ8 462 aa16.07■□□□□ 0.16
VPS28-215ENST00000531924 TBC1D32Q96NH3 1257 aa16.07■□□□□ 0.16
VPS28-215ENST00000531924 KXD1Q9BQD3 176 aa16.07■□□□□ 0.16
VPS28-215ENST00000531924 RPP25Q9BUL9 199 aaKnown RBP16.07■□□□□ 0.16
VPS28-215ENST00000531924 PLEKHA5Q9HAU0 1116 aa16.07■□□□□ 0.16
VPS28-215ENST00000531924 ODF2LQ9ULJ1 636 aa16.07■□□□□ 0.16
VPS28-215ENST00000531924 PRR23AA6NEV1 266 aa16.06■□□□□ 0.16
VPS28-215ENST00000531924 ABLIM1O14639 778 aa16.06■□□□□ 0.16
VPS28-215ENST00000531924 ZNF197O14709 1029 aa16.06■□□□□ 0.16
VPS28-215ENST00000531924 HNRNPDLO14979 420 aaKnown RBP16.06■□□□□ 0.16
VPS28-215ENST00000531924 XPOTO43592 962 aaKnown RBP16.06■□□□□ 0.16
VPS28-215ENST00000531924 TBCAO75347 108 aaKnown RBP16.06■□□□□ 0.16
VPS28-215ENST00000531924 DCNP07585 359 aaKnown RBP16.06■□□□□ 0.16
VPS28-215ENST00000531924 CXCL8P10145 99 aa16.06■□□□□ 0.16
VPS28-215ENST00000531924 CPB1P15086 417 aa16.06■□□□□ 0.16
VPS28-215ENST00000531924 ATF2P15336 505 aa16.06■□□□□ 0.16
VPS28-215ENST00000531924 PPP2R3AQ06190 1150 aa16.06■□□□□ 0.16
VPS28-215ENST00000531924 SNW1Q13573 536 aaKnown RBP16.06■□□□□ 0.16
VPS28-215ENST00000531924 CYP4A22Q5TCH4 519 aa16.06■□□□□ 0.16
VPS28-215ENST00000531924 TPGS2Q68CL5 300 aa16.06■□□□□ 0.16
VPS28-215ENST00000531924 IQCEQ6IPM2 695 aa16.06■□□□□ 0.16
VPS28-215ENST00000531924 ASCL5Q7RTU5 278 aa16.06■□□□□ 0.16
VPS28-215ENST00000531924 USP37Q86T82 979 aa16.06■□□□□ 0.16
VPS28-215ENST00000531924 KIF12Q96FN5 646 aa16.06■□□□□ 0.16
VPS28-215ENST00000531924 SUSD3Q96L08 255 aa16.06■□□□□ 0.16
VPS28-215ENST00000531924 CORO1BQ9BR76 489 aa16.06■□□□□ 0.16
VPS28-215ENST00000531924 GDE1Q9NZC3 331 aa16.06■□□□□ 0.16
VPS28-215ENST00000531924 TUBGCP4Q9UGJ1 667 aa16.06■□□□□ 0.16
VPS28-215ENST00000531924 FBXL5Q9UKA1 691 aa16.06■□□□□ 0.16
VPS28-215ENST00000531924 MTCL1Q9Y4B5 1905 aaKnown RBP16.06■□□□□ 0.16
VPS28-215ENST00000531924 ARHGEF37A1IGU5 675 aa16.05■□□□□ 0.16
VPS28-215ENST00000531924 WDR27A2RRH5 827 aa16.05■□□□□ 0.16
VPS28-215ENST00000531924 K7ENM7 598 aa16.05■□□□□ 0.16
VPS28-215ENST00000531924 ABLIM3O94929 683 aa16.05■□□□□ 0.16
VPS28-215ENST00000531924 CD2BP2O95400 341 aaKnown RBP16.05■□□□□ 0.16
VPS28-215ENST00000531924 LONP1P36776 959 aaKnown RBP16.05■□□□□ 0.16
VPS28-215ENST00000531924 NCKAP1LP55160 1127 aa16.05■□□□□ 0.16
VPS28-215ENST00000531924 SPAG1Q07617 926 aa16.05■□□□□ 0.16
VPS28-215ENST00000531924 ARSHQ5FYA8 562 aa16.05■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms