RNA–Protein interactions for RNA: ENST00000531727.5

CPSF1-207, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3 BASIC

Gene CPSF1, Length 704 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-207ENST00000531727 ITFG1Q8TB96 612 aa18.39■□□□□ 0.53
CPSF1-207ENST00000531727 GPR152Q8TDT2 470 aa18.39■□□□□ 0.53
CPSF1-207ENST00000531727 FGF13Q92913 245 aa18.39■□□□□ 0.53
CPSF1-207ENST00000531727 C18orf25Q96B23 403 aaPredicted RBP18.39■□□□□ 0.53
CPSF1-207ENST00000531727 SLC2A4RGQ9NR83 387 aa18.39■□□□□ 0.53
CPSF1-207ENST00000531727 HCFC1R1Q9NWW0 138 aa18.39■□□□□ 0.53
CPSF1-207ENST00000531727 LARSQ9P2J5 1176 aaKnown RBP18.39■□□□□ 0.53
CPSF1-207ENST00000531727 H0YCG3 227 aa18.38■□□□□ 0.53
CPSF1-207ENST00000531727 STK25O00506 426 aa18.38■□□□□ 0.53
CPSF1-207ENST00000531727 SYN3O14994 580 aa18.38■□□□□ 0.53
CPSF1-207ENST00000531727 CLDN3O15551 220 aa18.38■□□□□ 0.53
CPSF1-207ENST00000531727 ROR1Q01973 937 aa18.38■□□□□ 0.53
CPSF1-207ENST00000531727 CACNB1Q02641 598 aaPredicted RBP18.38■□□□□ 0.53
CPSF1-207ENST00000531727 SEZ6Q53EL9 994 aa18.38■□□□□ 0.53
CPSF1-207ENST00000531727 PARM1Q6UWI2 310 aa18.38■□□□□ 0.53
CPSF1-207ENST00000531727 ST13P5Q8NFI4 369 aaPredicted RBP18.38■□□□□ 0.53
CPSF1-207ENST00000531727 ZNF461Q8TAF7 563 aa18.38■□□□□ 0.53
CPSF1-207ENST00000531727 FGF14Q92915 247 aa18.38■□□□□ 0.53
CPSF1-207ENST00000531727 KCNN1Q92952 543 aa18.38■□□□□ 0.53
CPSF1-207ENST00000531727 CALML4Q96GE6 196 aa18.38■□□□□ 0.53
CPSF1-207ENST00000531727 TBC1D32Q96NH3 1257 aa18.38■□□□□ 0.53
CPSF1-207ENST00000531727 DNMT3BQ9UBC3 853 aaKnown RBP18.38■□□□□ 0.53
CPSF1-207ENST00000531727 ODF2LQ9ULJ1 636 aa18.38■□□□□ 0.53
CPSF1-207ENST00000531727 NUB1Q9Y5A7 615 aa18.38■□□□□ 0.53
CPSF1-207ENST00000531727 MYH15Q9Y2K3 1946 aa18.38■□□□□ 0.53
CPSF1-207ENST00000531727 NOTCH4Q99466 2003 aa18.37■□□□□ 0.53
CPSF1-207ENST00000531727 H7C4K7 107 aa18.37■□□□□ 0.53
CPSF1-207ENST00000531727 TBC1D4O60343 1298 aa18.37■□□□□ 0.53
CPSF1-207ENST00000531727 ABLIM3O94929 683 aa18.37■□□□□ 0.53
CPSF1-207ENST00000531727 BMP15O95972 392 aa18.37■□□□□ 0.53
CPSF1-207ENST00000531727 RFX1P22670 979 aa18.37■□□□□ 0.53
CPSF1-207ENST00000531727 NBL1P41271 181 aa18.37■□□□□ 0.53
CPSF1-207ENST00000531727 PABPC1LQ4VXU2 614 aaKnown RBP18.37■□□□□ 0.53
CPSF1-207ENST00000531727 MTSS1LQ765P7 747 aa18.37■□□□□ 0.53
CPSF1-207ENST00000531727 BRAPQ7Z569 592 aa18.37■□□□□ 0.53
CPSF1-207ENST00000531727 DTWD2Q8NBA8 298 aa18.37■□□□□ 0.53
CPSF1-207ENST00000531727 SUSD3Q96L08 255 aa18.37■□□□□ 0.53
CPSF1-207ENST00000531727 RPP25Q9BUL9 199 aaKnown RBP18.37■□□□□ 0.53
CPSF1-207ENST00000531727 HAPLN2Q9GZV7 340 aa18.37■□□□□ 0.53
CPSF1-207ENST00000531727 TBC1D17Q9HA65 648 aa18.37■□□□□ 0.53
CPSF1-207ENST00000531727 ARHGEF3Q9NR81 526 aa18.37■□□□□ 0.53
CPSF1-207ENST00000531727 KCNH3Q9ULD8 1083 aa18.37■□□□□ 0.53
CPSF1-207ENST00000531727 ARHGEF37A1IGU5 675 aa18.36■□□□□ 0.53
CPSF1-207ENST00000531727 WDR27A2RRH5 827 aa18.36■□□□□ 0.53
CPSF1-207ENST00000531727 UBA7P41226 1012 aa18.36■□□□□ 0.53
CPSF1-207ENST00000531727 MATR3P43243 847 aaKnown RBP eCLIP18.36■□□□□ 0.53
CPSF1-207ENST00000531727 MRPL58Q14197 206 aaKnown RBP18.36■□□□□ 0.53
CPSF1-207ENST00000531727 PHLDB3Q6NSJ2 640 aa18.36■□□□□ 0.53
CPSF1-207ENST00000531727 HAUS6Q7Z4H7 955 aa18.36■□□□□ 0.53
CPSF1-207ENST00000531727 GPBP1Q86WP2 473 aa18.36■□□□□ 0.53
CPSF1-207ENST00000531727 LRRC15Q8TF66 581 aa18.36■□□□□ 0.53
CPSF1-207ENST00000531727 BICD1Q96G01 975 aa18.36■□□□□ 0.53
CPSF1-207ENST00000531727 REEP2Q9BRK0 252 aa18.36■□□□□ 0.53
CPSF1-207ENST00000531727 PLEKHA5Q9HAU0 1116 aa18.36■□□□□ 0.53
CPSF1-207ENST00000531727 BLOC1S4Q9NUP1 217 aa18.36■□□□□ 0.53
CPSF1-207ENST00000531727 TUBGCP4Q9UGJ1 667 aa18.36■□□□□ 0.53
CPSF1-207ENST00000531727 MYO15AQ9UKN7 3530 aa18.35■□□□□ 0.53
CPSF1-207ENST00000531727 PRRG1O14668 218 aa18.35■□□□□ 0.53
CPSF1-207ENST00000531727 CLTAP09496 248 aa18.35■□□□□ 0.53
CPSF1-207ENST00000531727 CXCL8P10145 99 aa18.35■□□□□ 0.53
CPSF1-207ENST00000531727 ATF2P15336 505 aa18.35■□□□□ 0.53
CPSF1-207ENST00000531727 SCP2P22307 547 aa18.35■□□□□ 0.53
CPSF1-207ENST00000531727 ELF1P32519 619 aa18.35■□□□□ 0.53
CPSF1-207ENST00000531727 MCM4P33991 863 aa18.35■□□□□ 0.53
CPSF1-207ENST00000531727 LONP1P36776 959 aaKnown RBP18.35■□□□□ 0.53
CPSF1-207ENST00000531727 ANGPT1Q15389 498 aa18.35■□□□□ 0.53
CPSF1-207ENST00000531727 NPAS3Q8IXF0 933 aa18.35■□□□□ 0.53
CPSF1-207ENST00000531727 FBXL5Q9UKA1 691 aa18.35■□□□□ 0.53
CPSF1-207ENST00000531727 TTC26A0AVF1 554 aa18.34■□□□□ 0.53
CPSF1-207ENST00000531727 FAM13AO94988 1023 aa18.34■□□□□ 0.53
CPSF1-207ENST00000531727 LRG1P02750 347 aa18.34■□□□□ 0.53
CPSF1-207ENST00000531727 RHOP08100 348 aa18.34■□□□□ 0.53
CPSF1-207ENST00000531727 PLCG1P19174 1290 aa18.34■□□□□ 0.53
CPSF1-207ENST00000531727 LIG4P49917 911 aa18.34■□□□□ 0.53
CPSF1-207ENST00000531727 ZNF131P52739 623 aa18.34■□□□□ 0.53
CPSF1-207ENST00000531727 ARPP19P56211 112 aa18.34■□□□□ 0.53
CPSF1-207ENST00000531727 GPC5P78333 572 aa18.34■□□□□ 0.53
CPSF1-207ENST00000531727 GRIN1Q05586 938 aa18.34■□□□□ 0.53
CPSF1-207ENST00000531727 DHX8Q14562 1220 aaKnown RBP18.34■□□□□ 0.53
CPSF1-207ENST00000531727 SF3A1Q15459 793 aaKnown RBP18.34■□□□□ 0.53
CPSF1-207ENST00000531727 KYAT1Q16773 422 aa18.34■□□□□ 0.53
CPSF1-207ENST00000531727 CTXN3Q4LDR2 81 aa18.34■□□□□ 0.53
CPSF1-207ENST00000531727 TCEAL8Q8IYN2 117 aa18.34■□□□□ 0.53
CPSF1-207ENST00000531727 MYCT1Q8N699 235 aa18.34■□□□□ 0.53
CPSF1-207ENST00000531727 APPL2Q8NEU8 664 aa18.34■□□□□ 0.53
CPSF1-207ENST00000531727 ING5Q8WYH8 240 aa18.34■□□□□ 0.53
CPSF1-207ENST00000531727 DDX12PQ92771 950 aa18.34■□□□□ 0.53
CPSF1-207ENST00000531727 PARVGQ9HBI0 331 aa18.34■□□□□ 0.53
CPSF1-207ENST00000531727 AVENQ9NQS1 362 aaPredicted RBP18.34■□□□□ 0.53
CPSF1-207ENST00000531727 TBX20Q9UMR3 447 aa18.34■□□□□ 0.53
CPSF1-207ENST00000531727 PCDHB8Q9UN66 801 aa18.34■□□□□ 0.53
CPSF1-207ENST00000531727 MRPS23Q9Y3D9 190 aaKnown RBP18.34■□□□□ 0.53
CPSF1-207ENST00000531727 GTF3C5Q9Y5Q8 519 aaPredicted RBP18.34■□□□□ 0.53
CPSF1-207ENST00000531727 K7ENM7 598 aa18.33■□□□□ 0.52
CPSF1-207ENST00000531727 HNRNPDLO14979 420 aaKnown RBP18.33■□□□□ 0.52
CPSF1-207ENST00000531727 SEC24AO95486 1093 aa18.33■□□□□ 0.52
CPSF1-207ENST00000531727 PIGRP01833 764 aa18.33■□□□□ 0.52
CPSF1-207ENST00000531727 PTPN2P17706 415 aa18.33■□□□□ 0.52
CPSF1-207ENST00000531727 LRPAP1P30533 357 aa18.33■□□□□ 0.52
CPSF1-207ENST00000531727 TNFSF9P41273 254 aa18.33■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms