RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 SOX5P35711 763 aa22.85■■□□□ 1.25
VPS28-212ENST00000530836 MFAP3P55082 362 aa22.85■■□□□ 1.25
VPS28-212ENST00000530836 KLHL30Q0D2K2 578 aa22.85■■□□□ 1.25
VPS28-212ENST00000530836 DUOXA2Q1HG44 320 aa22.85■■□□□ 1.25
VPS28-212ENST00000530836 TDRD12Q587J7 1177 aaKnown RBP22.85■■□□□ 1.25
VPS28-212ENST00000530836 FBXO47Q5MNV8 452 aa22.85■■□□□ 1.25
VPS28-212ENST00000530836 PRPF38BQ5VTL8 546 aaKnown RBP22.85■■□□□ 1.25
VPS28-212ENST00000530836 SMYD5Q6GMV2 418 aa22.85■■□□□ 1.25
VPS28-212ENST00000530836 SLC27A1Q6PCB7 646 aa22.85■■□□□ 1.25
VPS28-212ENST00000530836 REXO1L1PQ8IX06 675 aa22.85■■□□□ 1.25
VPS28-212ENST00000530836 TXLNBQ8N3L3 684 aa22.85■■□□□ 1.25
VPS28-212ENST00000530836 CPB2Q96IY4 423 aa22.85■■□□□ 1.25
VPS28-212ENST00000530836 OSBPL7Q9BZF2 842 aa22.85■■□□□ 1.25
VPS28-212ENST00000530836 UBE2TQ9NPD8 197 aaPredicted RBP22.85■■□□□ 1.25
VPS28-212ENST00000530836 STAG3L1P0CL83 205 aa22.84■■□□□ 1.25
VPS28-212ENST00000530836 BMP8BP34820 402 aa22.84■■□□□ 1.25
VPS28-212ENST00000530836 BIRC3Q13489 604 aa22.84■■□□□ 1.25
VPS28-212ENST00000530836 DRAP1Q14919 205 aaPredicted RBP22.84■■□□□ 1.25
VPS28-212ENST00000530836 SPA17Q15506 151 aa22.84■■□□□ 1.25
VPS28-212ENST00000530836 ENOX2Q16206 610 aaKnown RBP22.84■■□□□ 1.25
VPS28-212ENST00000530836 SEZ6Q53EL9 994 aa22.84■■□□□ 1.25
VPS28-212ENST00000530836 DNTTIP2Q5QJE6 756 aaKnown RBP22.84■■□□□ 1.25
VPS28-212ENST00000530836 NYAP1Q6ZVC0 841 aa22.84■■□□□ 1.25
VPS28-212ENST00000530836 IRF2BP2Q7Z5L9 587 aa22.84■■□□□ 1.25
VPS28-212ENST00000530836 CD302Q8IX05 232 aa22.84■■□□□ 1.25
VPS28-212ENST00000530836 DESI2Q9BSY9 194 aa22.84■■□□□ 1.25
VPS28-212ENST00000530836 UBE2OQ9C0C9 1292 aaKnown RBP22.84■■□□□ 1.25
VPS28-212ENST00000530836 ASB7Q9H672 318 aa22.84■■□□□ 1.25
VPS28-212ENST00000530836 LCA5LO95447 670 aa22.83■■□□□ 1.25
VPS28-212ENST00000530836 EIF4A3P38919 411 aaKnown RBP22.83■■□□□ 1.25
VPS28-212ENST00000530836 LPIN1Q14693 890 aa22.83■■□□□ 1.25
VPS28-212ENST00000530836 TDRD10Q5VZ19 366 aaKnown RBP22.83■■□□□ 1.25
VPS28-212ENST00000530836 GJB7Q6PEY0 223 aa22.83■■□□□ 1.25
VPS28-212ENST00000530836 ZNF662Q6ZS27 426 aa22.83■■□□□ 1.25
VPS28-212ENST00000530836 USP38Q8NB14 1042 aa22.83■■□□□ 1.25
VPS28-212ENST00000530836 SEMA4DQ92854 862 aa22.83■■□□□ 1.25
VPS28-212ENST00000530836 LUC7LQ9NQ29 371 aaKnown RBP22.83■■□□□ 1.25
VPS28-212ENST00000530836 LTBP2Q14767 1821 aa22.83■■□□□ 1.25
VPS28-212ENST00000530836 AKR1B10O60218 316 aa22.82■■□□□ 1.24
VPS28-212ENST00000530836 PHACTR2O75167 634 aa22.82■■□□□ 1.24
VPS28-212ENST00000530836 GHRP10912 638 aa22.82■■□□□ 1.24
VPS28-212ENST00000530836 HOXA11P31270 313 aaPredicted RBP22.82■■□□□ 1.24
VPS28-212ENST00000530836 GRM5P41594 1212 aa22.82■■□□□ 1.24
VPS28-212ENST00000530836 PIK3CAP42336 1068 aa22.82■■□□□ 1.24
VPS28-212ENST00000530836 KIF11P52732 1056 aa22.82■■□□□ 1.24
VPS28-212ENST00000530836 WNT7BP56706 349 aa22.82■■□□□ 1.24
VPS28-212ENST00000530836 GCNT1Q02742 428 aa22.82■■□□□ 1.24
VPS28-212ENST00000530836 TMEM240Q5SV17 173 aa22.82■■□□□ 1.24
VPS28-212ENST00000530836 PDZRN4Q6ZMN7 1036 aaPredicted RBP22.82■■□□□ 1.24
VPS28-212ENST00000530836 VPS36Q86VN1 386 aa22.82■■□□□ 1.24
VPS28-212ENST00000530836 NT5DC4Q86YG4 428 aa22.82■■□□□ 1.24
VPS28-212ENST00000530836 JAKMIP2Q96AA8 810 aa22.82■■□□□ 1.24
VPS28-212ENST00000530836 ANKRD36BP1Q96IX9 119 aa22.82■■□□□ 1.24
VPS28-212ENST00000530836 IMPG2Q9BZV3 1241 aa22.82■■□□□ 1.24
VPS28-212ENST00000530836 C1orf112Q9NSG2 853 aa22.82■■□□□ 1.24
VPS28-212ENST00000530836 GFPT2O94808 682 aa22.82■■□□□ 1.24
VPS28-212ENST00000530836 HLA-DRAP01903 254 aa22.82■■□□□ 1.24
VPS28-212ENST00000530836 FGBP02675 491 aa22.82■■□□□ 1.24
VPS28-212ENST00000530836 ASTE1Q2TB18 679 aaPredicted RBP22.82■■□□□ 1.24
VPS28-212ENST00000530836 PLEKHG4Q58EX7 1191 aa22.82■■□□□ 1.24
VPS28-212ENST00000530836 ZNF365Q70YC5 407 aa22.82■■□□□ 1.24
VPS28-212ENST00000530836 CDR2LQ86X02 465 aaPredicted RBP22.82■■□□□ 1.24
VPS28-212ENST00000530836 TMEM40Q8WWA1 233 aa22.82■■□□□ 1.24
VPS28-212ENST00000530836 FAM212AQ96EL1 285 aa22.82■■□□□ 1.24
VPS28-212ENST00000530836 C16orf45Q96MC5 204 aaPredicted RBP22.82■■□□□ 1.24
VPS28-212ENST00000530836 ACAP3Q96P50 834 aa22.82■■□□□ 1.24
VPS28-212ENST00000530836 CCDC94Q9BW85 323 aaPredicted RBP22.82■■□□□ 1.24
VPS28-212ENST00000530836 PRO3102Q9H379 93 aa22.82■■□□□ 1.24
VPS28-212ENST00000530836 AGO3Q9H9G7 860 aaKnown RBP22.82■■□□□ 1.24
VPS28-212ENST00000530836 PLEKHA5Q9HAU0 1116 aa22.82■■□□□ 1.24
VPS28-212ENST00000530836 OFD1O75665 1012 aa22.81■■□□□ 1.24
VPS28-212ENST00000530836 TNNC2P02585 160 aa22.81■■□□□ 1.24
VPS28-212ENST00000530836 TMEM191BP0C7N4 346 aa22.81■■□□□ 1.24
VPS28-212ENST00000530836 PTPRJQ12913 1337 aa22.81■■□□□ 1.24
VPS28-212ENST00000530836 PSRC1Q6PGN9 363 aaPredicted RBP22.81■■□□□ 1.24
VPS28-212ENST00000530836 CHRDL2Q6WN34 429 aa22.81■■□□□ 1.24
VPS28-212ENST00000530836 ARHGEF19Q8IW93 802 aa22.81■■□□□ 1.24
VPS28-212ENST00000530836 PPM1KQ8N3J5 372 aa22.81■■□□□ 1.24
VPS28-212ENST00000530836 DBF4BQ8NFT6 615 aa22.81■■□□□ 1.24
VPS28-212ENST00000530836 BUD13Q9BRD0 619 aaKnown RBP eCLIP22.81■■□□□ 1.244e-7■■■■□ 21.8
VPS28-212ENST00000530836 AJAP1Q9UKB5 411 aaPredicted RBP22.81■■□□□ 1.24
VPS28-212ENST00000530836 RBAK-RBAKDNI3L0D1 243 aa22.8■■□□□ 1.24
VPS28-212ENST00000530836 PLEKP08567 350 aaPredicted RBP22.8■■□□□ 1.24
VPS28-212ENST00000530836 TNNT1P13805 278 aa22.8■■□□□ 1.24
VPS28-212ENST00000530836 FGFR4P22455 802 aa22.8■■□□□ 1.24
VPS28-212ENST00000530836 OSTNP61366 133 aa22.8■■□□□ 1.24
VPS28-212ENST00000530836 ARID5AQ03989 594 aa22.8■■□□□ 1.24
VPS28-212ENST00000530836 LMBRD2Q68DH5 695 aaPredicted RBP22.8■■□□□ 1.24
VPS28-212ENST00000530836 CNKSR3Q6P9H4 555 aa22.8■■□□□ 1.24
VPS28-212ENST00000530836 TRAPPC11Q7Z392 1133 aa22.8■■□□□ 1.24
VPS28-212ENST00000530836 CEP120Q8N960 986 aa22.8■■□□□ 1.24
VPS28-212ENST00000530836 ACRBPQ8NEB7 543 aa22.8■■□□□ 1.24
VPS28-212ENST00000530836 OR5B17Q8NGF7 314 aa22.8■■□□□ 1.24
VPS28-212ENST00000530836 HELQQ8TDG4 1101 aa22.8■■□□□ 1.24
VPS28-212ENST00000530836 SEPT8Q92599 483 aa22.8■■□□□ 1.24
VPS28-212ENST00000530836 IFIH1Q9BYX4 1025 aaKnown RBP22.8■■□□□ 1.24
VPS28-212ENST00000530836 GPR88Q9GZN0 384 aa22.8■■□□□ 1.24
VPS28-212ENST00000530836 HAUS4Q9H6D7 363 aa22.8■■□□□ 1.24
VPS28-212ENST00000530836 NOC2LQ9Y3T9 749 aaKnown RBP22.8■■□□□ 1.24
VPS28-212ENST00000530836 RANBP2P49792 3224 aaKnown RBP22.8■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms