RNA–Protein interactions for RNA: ENST00000528280.1

CHD7-208, Transcript of chromodomain helicase DNA binding protein 7, humanhuman

TSL 2

Gene CHD7, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD7-208ENST00000528280 PAAF1Q9BRP4 392 aa10.47□□□□□ -0.73
CHD7-208ENST00000528280 PYM1Q9BRP8 204 aaKnown RBP10.47□□□□□ -0.73
CHD7-208ENST00000528280 PRKD2Q9BZL6 878 aa10.47□□□□□ -0.73
CHD7-208ENST00000528280 RPF1Q9H9Y2 349 aaKnown RBP10.47□□□□□ -0.73
CHD7-208ENST00000528280 FOXD4L1Q9NU39 408 aa10.47□□□□□ -0.73
CHD7-208ENST00000528280 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP10.47□□□□□ -0.73
CHD7-208ENST00000528280 ANKFY1Q9P2R3 1169 aa10.47□□□□□ -0.73
CHD7-208ENST00000528280 MAFFQ9ULX9 164 aa10.47□□□□□ -0.73
CHD7-208ENST00000528280 NUB1Q9Y5A7 615 aa10.47□□□□□ -0.73
CHD7-208ENST00000528280 PCDHB13Q9Y5F0 798 aa10.47□□□□□ -0.73
CHD7-208ENST00000528280 ZFP37Q9Y6Q3 630 aaPredicted RBP10.47□□□□□ -0.73
CHD7-208ENST00000528280 A0A0B4J269 797 aa10.46□□□□□ -0.73
CHD7-208ENST00000528280 ARHGEF37A1IGU5 675 aa10.46□□□□□ -0.73
CHD7-208ENST00000528280 F8W810 466 aa10.46□□□□□ -0.73
CHD7-208ENST00000528280 PODXLO00592 558 aa10.46□□□□□ -0.73
CHD7-208ENST00000528280 CUTAO60888 179 aa10.46□□□□□ -0.73
CHD7-208ENST00000528280 ZMYND10O75800 440 aa10.46□□□□□ -0.73
CHD7-208ENST00000528280 ZSCAN22P10073 491 aaPredicted RBP10.46□□□□□ -0.73
CHD7-208ENST00000528280 HARSP12081 509 aaKnown RBP10.46□□□□□ -0.73
CHD7-208ENST00000528280 HOXA9P31269 272 aa10.46□□□□□ -0.73
CHD7-208ENST00000528280 CACNB1Q02641 598 aaPredicted RBP10.46□□□□□ -0.73
CHD7-208ENST00000528280 PPP2R3AQ06190 1150 aa10.46□□□□□ -0.73
CHD7-208ENST00000528280 SIGLEC14Q08ET2 396 aa10.46□□□□□ -0.73
CHD7-208ENST00000528280 GLRA4Q5JXX5 417 aa10.46□□□□□ -0.73
CHD7-208ENST00000528280 SPECC1Q5M775 1068 aa10.46□□□□□ -0.73
CHD7-208ENST00000528280 RTP2Q5QGT7 225 aa10.46□□□□□ -0.73
CHD7-208ENST00000528280 LIN9Q5TKA1 542 aa10.46□□□□□ -0.73
CHD7-208ENST00000528280 FAM173BQ6P4H8 233 aa10.46□□□□□ -0.73
CHD7-208ENST00000528280 STXBP4Q6ZWJ1 553 aa10.46□□□□□ -0.73
CHD7-208ENST00000528280 CEP120Q8N960 986 aa10.46□□□□□ -0.73
CHD7-208ENST00000528280 IQUBQ8NA54 791 aa10.46□□□□□ -0.73
CHD7-208ENST00000528280 HASPINQ8TF76 798 aa10.46□□□□□ -0.73
CHD7-208ENST00000528280 SMG7Q92540 1137 aaKnown RBP10.46□□□□□ -0.73
CHD7-208ENST00000528280 DDX12PQ92771 950 aa10.46□□□□□ -0.73
CHD7-208ENST00000528280 CLIC6Q96NY7 704 aa10.46□□□□□ -0.73
CHD7-208ENST00000528280 CLSTN3Q9BQT9 956 aa10.46□□□□□ -0.73
CHD7-208ENST00000528280 MSTO1Q9BUK6 570 aa10.46□□□□□ -0.73
CHD7-208ENST00000528280 MRPL44Q9H9J2 332 aaKnown RBP10.46□□□□□ -0.73
CHD7-208ENST00000528280 WDR6Q9NNW5 1121 aaKnown RBP10.46□□□□□ -0.73
CHD7-208ENST00000528280 IGSF9Q9P2J2 1179 aa10.46□□□□□ -0.73
CHD7-208ENST00000528280 UBQLN1Q9UMX0 589 aaKnown RBP10.46□□□□□ -0.73
CHD7-208ENST00000528280 SORCS3Q9UPU3 1222 aa10.46□□□□□ -0.73
CHD7-208ENST00000528280 DERAQ9Y315 318 aa10.46□□□□□ -0.73
CHD7-208ENST00000528280 MYH11P35749 1972 aa10.45□□□□□ -0.74
CHD7-208ENST00000528280 TTC26A0AVF1 554 aa10.45□□□□□ -0.74
CHD7-208ENST00000528280 TMEM221A6NGB7 291 aa10.45□□□□□ -0.74
CHD7-208ENST00000528280 C2CD4DB7Z1M9 353 aa10.45□□□□□ -0.74
CHD7-208ENST00000528280 M0R296 226 aa10.45□□□□□ -0.74
CHD7-208ENST00000528280 XYLBO75191 536 aa10.45□□□□□ -0.74
CHD7-208ENST00000528280 KRT37O76014 449 aa10.45□□□□□ -0.74
CHD7-208ENST00000528280 LDHAP00338 332 aaKnown RBP10.45□□□□□ -0.74
CHD7-208ENST00000528280 ADRB2P07550 413 aa10.45□□□□□ -0.74
CHD7-208ENST00000528280 SPATA31D3P0C874 917 aa10.45□□□□□ -0.74
CHD7-208ENST00000528280 ELF1P32519 619 aa10.45□□□□□ -0.74
CHD7-208ENST00000528280 OR1D2P34982 312 aa10.45□□□□□ -0.74
CHD7-208ENST00000528280 ID4P47928 161 aa10.45□□□□□ -0.74
CHD7-208ENST00000528280 MTMR3Q13615 1198 aa10.45□□□□□ -0.74
CHD7-208ENST00000528280 ZBTB6Q15916 424 aa10.45□□□□□ -0.74
CHD7-208ENST00000528280 PPM1LQ5SGD2 360 aa10.45□□□□□ -0.74
CHD7-208ENST00000528280 PRSS55Q6UWB4 352 aaPredicted RBP10.45□□□□□ -0.74
CHD7-208ENST00000528280 SPATA31D4Q6ZUB0 917 aa10.45□□□□□ -0.74
CHD7-208ENST00000528280 USP49Q70CQ1 688 aa10.45□□□□□ -0.74
CHD7-208ENST00000528280 DYMQ7RTS9 669 aa10.45□□□□□ -0.74
CHD7-208ENST00000528280 MAP4K3Q8IVH8 894 aa10.45□□□□□ -0.74
CHD7-208ENST00000528280 CCDC65Q8IXS2 484 aa10.45□□□□□ -0.74
CHD7-208ENST00000528280 FBXL6Q8N531 539 aa10.45□□□□□ -0.74
CHD7-208ENST00000528280 BEST2Q8NFU1 509 aa10.45□□□□□ -0.74
CHD7-208ENST00000528280 KCNG4Q8TDN1 519 aa10.45□□□□□ -0.74
CHD7-208ENST00000528280 ATOH1Q92858 354 aaPredicted RBP10.45□□□□□ -0.74
CHD7-208ENST00000528280 B3GALT6Q96L58 329 aa10.45□□□□□ -0.74
CHD7-208ENST00000528280 ZMAT2Q96NC0 199 aaKnown RBP10.45□□□□□ -0.74
CHD7-208ENST00000528280 ACCSQ96QU6 501 aa10.45□□□□□ -0.74
CHD7-208ENST00000528280 CXCL16Q9H2A7 254 aa10.45□□□□□ -0.74
CHD7-208ENST00000528280 ASB7Q9H672 318 aa10.45□□□□□ -0.74
CHD7-208ENST00000528280 TMEM206Q9H813 350 aa10.45□□□□□ -0.74
CHD7-208ENST00000528280 OLFML3Q9NRN5 406 aa10.45□□□□□ -0.74
CHD7-208ENST00000528280 TFIP11Q9UBB9 837 aaKnown RBP10.45□□□□□ -0.74
CHD7-208ENST00000528280 MTRRQ9UBK8 725 aa10.45□□□□□ -0.74
CHD7-208ENST00000528280 LIMD1Q9UGP4 676 aa10.45□□□□□ -0.74
CHD7-208ENST00000528280 STYXL1Q9Y6J8 313 aa10.45□□□□□ -0.74
CHD7-208ENST00000528280 EPG5Q9HCE0 2579 aa10.45□□□□□ -0.74
CHD7-208ENST00000528280 CACNA1GO43497 2377 aa10.45□□□□□ -0.74
CHD7-208ENST00000528280 WDR87Q6ZQQ6 2873 aa10.44□□□□□ -0.74
CHD7-208ENST00000528280 POU2F2P09086 479 aa10.44□□□□□ -0.74
CHD7-208ENST00000528280 WEE2P0C1S8 567 aa10.44□□□□□ -0.74
CHD7-208ENST00000528280 RPL17P18621 184 aaKnown RBP10.44□□□□□ -0.74
CHD7-208ENST00000528280 NMT1P30419 496 aaKnown RBP10.44□□□□□ -0.74
CHD7-208ENST00000528280 LRPAP1P30533 357 aa10.44□□□□□ -0.74
CHD7-208ENST00000528280 AXDND1Q5T1B0 1012 aaPredicted RBP10.44□□□□□ -0.74
CHD7-208ENST00000528280 TPGS2Q68CL5 300 aa10.44□□□□□ -0.74
CHD7-208ENST00000528280 ADALQ6DHV7 355 aa10.44□□□□□ -0.74
CHD7-208ENST00000528280 KANK3Q6NY19 840 aa10.44□□□□□ -0.74
CHD7-208ENST00000528280 ASCL5Q7RTU5 278 aa10.44□□□□□ -0.74
CHD7-208ENST00000528280 NT5DC4Q86YG4 428 aa10.44□□□□□ -0.74
CHD7-208ENST00000528280 GLYCTKQ8IVS8 523 aa10.44□□□□□ -0.74
CHD7-208ENST00000528280 SUGP1Q8IWZ8 645 aaKnown RBP10.44□□□□□ -0.74
CHD7-208ENST00000528280 ZNF461Q8TAF7 563 aa10.44□□□□□ -0.74
CHD7-208ENST00000528280 DNAJC19Q96DA6 116 aa10.44□□□□□ -0.74
CHD7-208ENST00000528280 KIF12Q96FN5 646 aa10.44□□□□□ -0.74
CHD7-208ENST00000528280 SUSD3Q96L08 255 aa10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms