RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 NR1I2O75469 434 aa11.62□□□□□ -0.55
CD44-227ENST00000528086 VNN2O95498 520 aa11.62□□□□□ -0.55
CD44-227ENST00000528086 GLUD1P00367 558 aa11.62□□□□□ -0.55
CD44-227ENST00000528086 KRT18P05783 430 aaKnown RBP11.62□□□□□ -0.55
CD44-227ENST00000528086 ADH1AP07327 375 aa11.62□□□□□ -0.55
CD44-227ENST00000528086 NFICP08651 508 aa11.62□□□□□ -0.55
CD44-227ENST00000528086 LRPAP1P30533 357 aa11.62□□□□□ -0.55
CD44-227ENST00000528086 STAT6P42226 847 aa11.62□□□□□ -0.55
CD44-227ENST00000528086 AARSP49588 968 aaKnown RBP eCLIP11.62□□□□□ -0.55
CD44-227ENST00000528086 ACOT2P49753 483 aa11.62□□□□□ -0.55
CD44-227ENST00000528086 LIG4P49917 911 aa11.62□□□□□ -0.55
CD44-227ENST00000528086 RESP18Q5W5W9 173 aa11.62□□□□□ -0.55
CD44-227ENST00000528086 CNNM4Q6P4Q7 775 aa11.62□□□□□ -0.55
CD44-227ENST00000528086 PDZRN4Q6ZMN7 1036 aaPredicted RBP11.62□□□□□ -0.55
CD44-227ENST00000528086 CEP57Q86XR8 500 aa11.62□□□□□ -0.55
CD44-227ENST00000528086 EFCAB13Q8IY85 973 aa11.62□□□□□ -0.55
CD44-227ENST00000528086 RASSF8Q8NHQ8 419 aa11.62□□□□□ -0.55
CD44-227ENST00000528086 ZNF396Q96N95 335 aaPredicted RBP11.62□□□□□ -0.55
CD44-227ENST00000528086 POP1Q99575 1024 aaKnown RBP11.62□□□□□ -0.55
CD44-227ENST00000528086 RHOBTB2Q9BYZ6 727 aa11.62□□□□□ -0.55
CD44-227ENST00000528086 TRIM9Q9C026 710 aa11.62□□□□□ -0.55
CD44-227ENST00000528086 SFXN1Q9H9B4 322 aa11.62□□□□□ -0.55
CD44-227ENST00000528086 OLFML3Q9NRN5 406 aa11.62□□□□□ -0.55
CD44-227ENST00000528086 TOPORSQ9NS56 1045 aaPredicted RBP11.62□□□□□ -0.55
CD44-227ENST00000528086 KCNG1Q9UIX4 513 aa11.62□□□□□ -0.55
CD44-227ENST00000528086 H0YCG3 227 aa11.61□□□□□ -0.55
CD44-227ENST00000528086 PRPF6O94906 941 aaKnown RBP11.61□□□□□ -0.55
CD44-227ENST00000528086 C1RP00736 705 aa11.61□□□□□ -0.55
CD44-227ENST00000528086 ASGR2P07307 311 aa11.61□□□□□ -0.55
CD44-227ENST00000528086 OR1D2P34982 312 aa11.61□□□□□ -0.55
CD44-227ENST00000528086 MTHFRP42898 656 aa11.61□□□□□ -0.55
CD44-227ENST00000528086 YARSP54577 528 aaKnown RBP11.61□□□□□ -0.55
CD44-227ENST00000528086 RAB33AQ14088 237 aa11.61□□□□□ -0.55
CD44-227ENST00000528086 BMS1Q14692 1282 aaKnown RBP11.61□□□□□ -0.55
CD44-227ENST00000528086 VARS2Q5ST30 1063 aaKnown RBP11.61□□□□□ -0.55
CD44-227ENST00000528086 L1TD1Q5T7N2 865 aaKnown RBP11.61□□□□□ -0.55
CD44-227ENST00000528086 JADE1Q6IE81 842 aa11.61□□□□□ -0.55
CD44-227ENST00000528086 EPM2AIP1Q7L775 607 aaPredicted RBP11.61□□□□□ -0.55
CD44-227ENST00000528086 GRAMD1CQ8IYS0 662 aa11.61□□□□□ -0.55
CD44-227ENST00000528086 KREMEN2Q8NCW0 462 aa11.61□□□□□ -0.55
CD44-227ENST00000528086 CXorf38Q8TB03 319 aa11.61□□□□□ -0.55
CD44-227ENST00000528086 EDAQ92838 391 aa11.61□□□□□ -0.55
CD44-227ENST00000528086 DHX58Q96C10 678 aa11.61□□□□□ -0.55
CD44-227ENST00000528086 ASIC4Q96FT7 647 aa11.61□□□□□ -0.55
CD44-227ENST00000528086 BICD1Q96G01 975 aa11.61□□□□□ -0.55
CD44-227ENST00000528086 BORCS6Q96GS4 357 aa11.61□□□□□ -0.55
CD44-227ENST00000528086 SUSD3Q96L08 255 aa11.61□□□□□ -0.55
CD44-227ENST00000528086 UROC1Q96N76 676 aa11.61□□□□□ -0.55
CD44-227ENST00000528086 MYADMQ96S97 322 aa11.61□□□□□ -0.55
CD44-227ENST00000528086 CBWD1Q9BRT8 395 aa11.61□□□□□ -0.55
CD44-227ENST00000528086 MSTO1Q9BUK6 570 aa11.61□□□□□ -0.55
CD44-227ENST00000528086 PLEKHA5Q9HAU0 1116 aa11.61□□□□□ -0.55
CD44-227ENST00000528086 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP11.61□□□□□ -0.55
CD44-227ENST00000528086 PANK4Q9NVE7 773 aa11.61□□□□□ -0.55
CD44-227ENST00000528086 SSX2IPQ9Y2D8 614 aa11.61□□□□□ -0.55
CD44-227ENST00000528086 BACE2Q9Y5Z0 518 aa11.61□□□□□ -0.55
CD44-227ENST00000528086 KMT2EQ8IZD2 1858 aa11.61□□□□□ -0.55
CD44-227ENST00000528086 ANO9A1A5B4 782 aa11.6□□□□□ -0.55
CD44-227ENST00000528086 M0QZQ0 153 aa11.6□□□□□ -0.55
CD44-227ENST00000528086 POLR2DO15514 142 aaKnown RBP11.6□□□□□ -0.55
CD44-227ENST00000528086 ACTN4O43707 911 aaKnown RBP11.6□□□□□ -0.55
CD44-227ENST00000528086 KLRC4O43908 158 aa11.6□□□□□ -0.55
CD44-227ENST00000528086 ZMYND10O75800 440 aa11.6□□□□□ -0.55
CD44-227ENST00000528086 ABLIM3O94929 683 aa11.6□□□□□ -0.55
CD44-227ENST00000528086 SRGAP2BP0DMP2 458 aa11.6□□□□□ -0.55
CD44-227ENST00000528086 IDEP14735 1019 aa11.6□□□□□ -0.55
CD44-227ENST00000528086 GAP43P17677 238 aa11.6□□□□□ -0.55
CD44-227ENST00000528086 COL9A1P20849 921 aa11.6□□□□□ -0.55
CD44-227ENST00000528086 RPL9P32969 192 aaKnown RBP11.6□□□□□ -0.55
CD44-227ENST00000528086 NTHL1P78549 312 aa11.6□□□□□ -0.55
CD44-227ENST00000528086 ZXDAP98168 799 aa11.6□□□□□ -0.55
CD44-227ENST00000528086 TMEM31Q5JXX7 168 aa11.6□□□□□ -0.55
CD44-227ENST00000528086 ATAT1Q5SQI0 421 aa11.6□□□□□ -0.55
CD44-227ENST00000528086 SPATA1Q5VX52 437 aa11.6□□□□□ -0.55
CD44-227ENST00000528086 SLC8B1Q6J4K2 584 aa11.6□□□□□ -0.55
CD44-227ENST00000528086 CES5AQ6NT32 575 aa11.6□□□□□ -0.55
CD44-227ENST00000528086 C15orf39Q6ZRI6 1047 aa11.6□□□□□ -0.55
CD44-227ENST00000528086 HFE2Q6ZVN8 426 aa11.6□□□□□ -0.55
CD44-227ENST00000528086 APBB1IPQ7Z5R6 666 aaPredicted RBP11.6□□□□□ -0.55
CD44-227ENST00000528086 HDAC7Q8WUI4 952 aa11.6□□□□□ -0.55
CD44-227ENST00000528086 LEO1Q8WVC0 666 aaPredicted RBP11.6□□□□□ -0.55
CD44-227ENST00000528086 HVCN1Q96D96 273 aa11.6□□□□□ -0.55
CD44-227ENST00000528086 KIF12Q96FN5 646 aa11.6□□□□□ -0.55
CD44-227ENST00000528086 NECTIN4Q96NY8 510 aa11.6□□□□□ -0.55
CD44-227ENST00000528086 C7orf25Q9BPX7 421 aa11.6□□□□□ -0.55
CD44-227ENST00000528086 C1QTNF1Q9BXJ1 281 aa11.6□□□□□ -0.55
CD44-227ENST00000528086 PRKD2Q9BZL6 878 aa11.6□□□□□ -0.55
CD44-227ENST00000528086 TNMDQ9H2S6 317 aa11.6□□□□□ -0.55
CD44-227ENST00000528086 MRPL44Q9H9J2 332 aaKnown RBP11.6□□□□□ -0.55
CD44-227ENST00000528086 WDR6Q9NNW5 1121 aaKnown RBP11.6□□□□□ -0.55
CD44-227ENST00000528086 SLC38A7Q9NVC3 462 aa11.6□□□□□ -0.55
CD44-227ENST00000528086 SEL1LQ9UBV2 794 aa11.6□□□□□ -0.55
CD44-227ENST00000528086 HPSEQ9Y251 543 aa11.6□□□□□ -0.55
CD44-227ENST00000528086 CDY1Q9Y6F8 540 aa11.6□□□□□ -0.55
CD44-227ENST00000528086 MUC6Q6W4X9 2439 aa11.6□□□□□ -0.55
CD44-227ENST00000528086 WDR27A2RRH5 827 aa11.59□□□□□ -0.55
CD44-227ENST00000528086 PIRO00625 290 aa11.59□□□□□ -0.55
CD44-227ENST00000528086 TGFB1I1O43294 461 aa11.59□□□□□ -0.55
CD44-227ENST00000528086 SEC24AO95486 1093 aa11.59□□□□□ -0.55
CD44-227ENST00000528086 CYP3A5P20815 502 aa11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms