RNA–Protein interactions for RNA: ENST00000526977.5

VPS28-207, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,036 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-207ENST00000526977 RNF10Q8N5U6 811 aaKnown RBP20.34■□□□□ 0.85
VPS28-207ENST00000526977 DHX38Q92620 1227 aaKnown RBP20.34■□□□□ 0.85
VPS28-207ENST00000526977 SAR1BQ9Y6B6 198 aa20.34■□□□□ 0.85
VPS28-207ENST00000526977 ANO9A1A5B4 782 aa20.34■□□□□ 0.85
VPS28-207ENST00000526977 RPS6KA5O75582 802 aa20.34■□□□□ 0.85
VPS28-207ENST00000526977 CLTAP09496 248 aa20.34■□□□□ 0.85
VPS28-207ENST00000526977 CTSHP09668 335 aa20.34■□□□□ 0.85
VPS28-207ENST00000526977 DLATP10515 647 aaKnown RBP20.34■□□□□ 0.85
VPS28-207ENST00000526977 EPC2Q52LR7 807 aa20.34■□□□□ 0.85
VPS28-207ENST00000526977 SEZ6Q53EL9 994 aa20.34■□□□□ 0.85
VPS28-207ENST00000526977 KRT39Q6A163 491 aa20.34■□□□□ 0.85
VPS28-207ENST00000526977 NOC2LQ9Y3T9 749 aaKnown RBP20.34■□□□□ 0.85
VPS28-207ENST00000526977 JRKLQ9Y4A0 524 aa20.34■□□□□ 0.85
VPS28-207ENST00000526977 DAAM1Q9Y4D1 1078 aa20.34■□□□□ 0.85
VPS28-207ENST00000526977 SQORQ9Y6N5 450 aa20.34■□□□□ 0.85
VPS28-207ENST00000526977 MROH7Q68CQ1 1323 aa20.33■□□□□ 0.85
VPS28-207ENST00000526977 GPR182O15218 404 aa20.33■□□□□ 0.85
VPS28-207ENST00000526977 LRRN2O75325 713 aa20.33■□□□□ 0.85
VPS28-207ENST00000526977 TNFSF9P41273 254 aa20.33■□□□□ 0.85
VPS28-207ENST00000526977 GJA8P48165 433 aa20.33■□□□□ 0.85
VPS28-207ENST00000526977 NAB2Q15742 525 aa20.33■□□□□ 0.85
VPS28-207ENST00000526977 C10orf76Q5T2E6 689 aa20.33■□□□□ 0.85
VPS28-207ENST00000526977 FBXO38Q6PIJ6 1188 aa20.33■□□□□ 0.85
VPS28-207ENST00000526977 ANKLE1Q8NAG6 615 aa20.33■□□□□ 0.85
VPS28-207ENST00000526977 USP38Q8NB14 1042 aa20.33■□□□□ 0.85
VPS28-207ENST00000526977 GOLGA1Q92805 767 aa20.33■□□□□ 0.85
VPS28-207ENST00000526977 TMEM117Q9H0C3 514 aa20.33■□□□□ 0.85
VPS28-207ENST00000526977 TMEM8AQ9HCN3 771 aa20.33■□□□□ 0.85
VPS28-207ENST00000526977 PDE11AQ9HCR9 933 aa20.33■□□□□ 0.85
VPS28-207ENST00000526977 PIN4Q9Y237 131 aaKnown RBP20.33■□□□□ 0.85
VPS28-207ENST00000526977 EVI5O60447 810 aa20.32■□□□□ 0.84
VPS28-207ENST00000526977 STAG3L1P0CL83 205 aa20.32■□□□□ 0.84
VPS28-207ENST00000526977 TNNI1P19237 187 aa20.32■□□□□ 0.84
VPS28-207ENST00000526977 ANXA13P27216 316 aa20.32■□□□□ 0.84
VPS28-207ENST00000526977 FAM228AQ86W67 206 aa20.32■□□□□ 0.84
VPS28-207ENST00000526977 CAGE1Q8TC20 777 aa20.32■□□□□ 0.84
VPS28-207ENST00000526977 POP1Q99575 1024 aaKnown RBP20.32■□□□□ 0.84
VPS28-207ENST00000526977 PACSIN1Q9BY11 444 aa20.32■□□□□ 0.84
VPS28-207ENST00000526977 EPC1Q9H2F5 836 aa20.32■□□□□ 0.84
VPS28-207ENST00000526977 RPF1Q9H9Y2 349 aaKnown RBP20.32■□□□□ 0.84
VPS28-207ENST00000526977 CHST12Q9NRB3 414 aa20.32■□□□□ 0.84
VPS28-207ENST00000526977 NAGPAQ9UK23 515 aa20.32■□□□□ 0.84
VPS28-207ENST00000526977 DNAH12Q6ZR08 3092 aa20.32■□□□□ 0.84
VPS28-207ENST00000526977 TULP1O00294 542 aaPredicted RBP20.32■□□□□ 0.84
VPS28-207ENST00000526977 SRGAP2O75044 1071 aa20.32■□□□□ 0.84
VPS28-207ENST00000526977 H2AFXP16104 143 aaPredicted RBP20.32■□□□□ 0.84
VPS28-207ENST00000526977 MXI1P50539 228 aa20.32■□□□□ 0.84
VPS28-207ENST00000526977 AP3M2P53677 418 aa20.32■□□□□ 0.84
VPS28-207ENST00000526977 TEX35Q5T0J7 233 aa20.32■□□□□ 0.84
VPS28-207ENST00000526977 FAM126BQ8IXS8 530 aa20.32■□□□□ 0.84
VPS28-207ENST00000526977 RABGGTAQ92696 567 aa20.32■□□□□ 0.84
VPS28-207ENST00000526977 NENFQ9UMX5 172 aa20.32■□□□□ 0.84
VPS28-207ENST00000526977 ST3GAL5Q9UNP4 418 aa20.32■□□□□ 0.84
VPS28-207ENST00000526977 IL18RAPO95256 599 aa20.31■□□□□ 0.84
VPS28-207ENST00000526977 CKBP12277 381 aa20.31■□□□□ 0.84
VPS28-207ENST00000526977 RFX1P22670 979 aa20.31■□□□□ 0.84
VPS28-207ENST00000526977 GRM5P41594 1212 aa20.31■□□□□ 0.84
VPS28-207ENST00000526977 MNX1P50219 401 aaPredicted RBP20.31■□□□□ 0.84
VPS28-207ENST00000526977 OSTNP61366 133 aa20.31■□□□□ 0.84
VPS28-207ENST00000526977 ARHGAP44Q17R89 818 aa20.31■□□□□ 0.84
VPS28-207ENST00000526977 FBXO47Q5MNV8 452 aa20.31■□□□□ 0.84
VPS28-207ENST00000526977 ZNF618Q5T7W0 954 aa20.31■□□□□ 0.84
VPS28-207ENST00000526977 GPR161Q8N6U8 529 aaKnown RBP20.31■□□□□ 0.84
VPS28-207ENST00000526977 CEP120Q8N960 986 aa20.31■□□□□ 0.84
VPS28-207ENST00000526977 NOX5Q96PH1 765 aa20.31■□□□□ 0.84
VPS28-207ENST00000526977 CGRRF1Q99675 332 aa20.31■□□□□ 0.84
VPS28-207ENST00000526977 UBE2TQ9NPD8 197 aaPredicted RBP20.31■□□□□ 0.84
VPS28-207ENST00000526977 FOXN3O00409 490 aaPredicted RBP20.31■□□□□ 0.84
VPS28-207ENST00000526977 DDX3XO00571 662 aaKnown RBP eCLIP20.31■□□□□ 0.846e-7■■□□□ 12.4
VPS28-207ENST00000526977 BUB1O43683 1085 aa20.31■□□□□ 0.84
VPS28-207ENST00000526977 CD4P01730 458 aa20.31■□□□□ 0.84
VPS28-207ENST00000526977 ALKBH5Q6P6C2 394 aaKnown RBP20.31■□□□□ 0.84
VPS28-207ENST00000526977 SV2AQ7L0J3 742 aa20.31■□□□□ 0.84
VPS28-207ENST00000526977 WDR49Q8IV35 697 aa20.31■□□□□ 0.84
VPS28-207ENST00000526977 ARHGEF19Q8IW93 802 aa20.31■□□□□ 0.84
VPS28-207ENST00000526977 ACAP3Q96P50 834 aa20.31■□□□□ 0.84
VPS28-207ENST00000526977 CCDC94Q9BW85 323 aaPredicted RBP20.31■□□□□ 0.84
VPS28-207ENST00000526977 TRIM6Q9C030 488 aaPredicted RBP20.31■□□□□ 0.84
VPS28-207ENST00000526977 COQ4Q9Y3A0 265 aa20.31■□□□□ 0.84
VPS28-207ENST00000526977 TLR3O15455 904 aaKnown RBP20.3■□□□□ 0.84
VPS28-207ENST00000526977 NPTXRO95502 500 aa20.3■□□□□ 0.84
VPS28-207ENST00000526977 ZSCAN20P17040 1043 aaPredicted RBP20.3■□□□□ 0.84
VPS28-207ENST00000526977 NFX1Q12986 1120 aaKnown RBP20.3■□□□□ 0.84
VPS28-207ENST00000526977 C1orf53Q5VUE5 145 aa20.3■□□□□ 0.84
VPS28-207ENST00000526977 SLC39A5Q6ZMH5 540 aa20.3■□□□□ 0.84
VPS28-207ENST00000526977 SLC30A5Q8TAD4 765 aa20.3■□□□□ 0.84
VPS28-207ENST00000526977 OLIG1Q8TAK6 271 aa20.3■□□□□ 0.84
VPS28-207ENST00000526977 ALS2CR12Q96Q35 445 aa20.3■□□□□ 0.84
VPS28-207ENST00000526977 ASB7Q9H672 318 aa20.3■□□□□ 0.84
VPS28-207ENST00000526977 PRDM10Q9NQV6 1147 aa20.3■□□□□ 0.84
VPS28-207ENST00000526977 CTAGE15A4D2H0 777 aa20.29■□□□□ 0.84
VPS28-207ENST00000526977 CTAGE8P0CG41 777 aa20.29■□□□□ 0.84
VPS28-207ENST00000526977 BFSP2Q13515 415 aa20.29■□□□□ 0.84
VPS28-207ENST00000526977 BMS1Q14692 1282 aaKnown RBP20.29■□□□□ 0.84
VPS28-207ENST00000526977 C15orf39Q6ZRI6 1047 aa20.29■□□□□ 0.84
VPS28-207ENST00000526977 CTAGE6Q86UF2 777 aa20.29■□□□□ 0.84
VPS28-207ENST00000526977 VPS36Q86VN1 386 aa20.29■□□□□ 0.84
VPS28-207ENST00000526977 CD302Q8IX05 232 aa20.29■□□□□ 0.84
VPS28-207ENST00000526977 CTAGE4Q8IX94 777 aa20.29■□□□□ 0.84
VPS28-207ENST00000526977 FBXL13Q8NEE6 735 aa20.29■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms