RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 MIGA2Q7L4E1 593 aa5.37□□□□□ -1.55
CD44-217ENST00000525348 BEND2Q8NDZ0 799 aa5.37□□□□□ -1.55
CD44-217ENST00000525348 ASB10Q8WXI3 467 aa5.37□□□□□ -1.55
CD44-217ENST00000525348 PRRX2Q99811 253 aa5.37□□□□□ -1.55
CD44-217ENST00000525348 BRINP2Q9C0B6 783 aa5.37□□□□□ -1.55
CD44-217ENST00000525348 C11orf54Q9H0W9 315 aaPredicted RBP5.37□□□□□ -1.55
CD44-217ENST00000525348 GSTO2Q9H4Y5 243 aa5.37□□□□□ -1.55
CD44-217ENST00000525348 HOMER2Q9NSB8 354 aa5.37□□□□□ -1.55
CD44-217ENST00000525348 TDP1Q9NUW8 608 aa5.37□□□□□ -1.55
CD44-217ENST00000525348 SAP30BPQ9UHR5 308 aaKnown RBP5.37□□□□□ -1.55
CD44-217ENST00000525348 ATP11BQ9Y2G3 1177 aa5.37□□□□□ -1.55
CD44-217ENST00000525348 MRFAP1Q9Y605 127 aa5.37□□□□□ -1.55
CD44-217ENST00000525348 A0A1B0GTW7 788 aa5.36□□□□□ -1.55
CD44-217ENST00000525348 CDHR4A6H8M9 788 aa5.36□□□□□ -1.55
CD44-217ENST00000525348 KIAA0391O15091 583 aaKnown RBP5.36□□□□□ -1.55
CD44-217ENST00000525348 DSC2Q02487 901 aa5.36□□□□□ -1.55
CD44-217ENST00000525348 FSTL1Q12841 308 aa5.36□□□□□ -1.55
CD44-217ENST00000525348 UAP1L1Q3KQV9 507 aa5.36□□□□□ -1.55
CD44-217ENST00000525348 KRTAP15-1Q3LI76 137 aa5.36□□□□□ -1.55
CD44-217ENST00000525348 FLYWCH1Q4VC44 716 aa5.36□□□□□ -1.55
CD44-217ENST00000525348 EFCAB2Q5VUJ9 269 aa5.36□□□□□ -1.55
CD44-217ENST00000525348 Q6YL49 198 aa5.36□□□□□ -1.55
CD44-217ENST00000525348 TMEM132CQ8N3T6 1108 aa5.36□□□□□ -1.55
CD44-217ENST00000525348 GPR150Q8NGU9 434 aa5.36□□□□□ -1.55
CD44-217ENST00000525348 ZCRB1Q8TBF4 217 aaKnown RBP5.36□□□□□ -1.55
CD44-217ENST00000525348 MARS2Q96GW9 593 aaKnown RBP5.36□□□□□ -1.55
CD44-217ENST00000525348 SLITRK6Q9H5Y7 841 aa5.36□□□□□ -1.55
CD44-217ENST00000525348 SYBUQ9NX95 663 aa5.36□□□□□ -1.55
CD44-217ENST00000525348 VSX1Q9NZR4 365 aaPredicted RBP5.36□□□□□ -1.55
CD44-217ENST00000525348 HSFX1Q9UBD0 423 aa5.36□□□□□ -1.55
CD44-217ENST00000525348 WDR33Q9C0J8 1336 aaKnown RBP5.35□□□□□ -1.55
CD44-217ENST00000525348 GRM6O15303 877 aa5.35□□□□□ -1.55
CD44-217ENST00000525348 SGTAO43765 313 aa5.35□□□□□ -1.55
CD44-217ENST00000525348 RAMP2O60895 175 aa5.35□□□□□ -1.55
CD44-217ENST00000525348 PPFIA4O75335 1185 aa5.35□□□□□ -1.55
CD44-217ENST00000525348 ZFPL1O95159 310 aa5.35□□□□□ -1.55
CD44-217ENST00000525348 FCER1AP12319 257 aa5.35□□□□□ -1.55
CD44-217ENST00000525348 ADKP55263 362 aaKnown RBP5.35□□□□□ -1.55
CD44-217ENST00000525348 HSD11B2P80365 405 aa5.35□□□□□ -1.55
CD44-217ENST00000525348 GUCY1B3Q02153 619 aa5.35□□□□□ -1.55
CD44-217ENST00000525348 TLE1Q04724 770 aa5.35□□□□□ -1.55
CD44-217ENST00000525348 CRB2Q5IJ48 1285 aa5.35□□□□□ -1.55
CD44-217ENST00000525348 RSPH3Q86UC2 560 aa5.35□□□□□ -1.55
CD44-217ENST00000525348 NSUN6Q8TEA1 469 aaKnown RBP5.35□□□□□ -1.55
CD44-217ENST00000525348 NACC2Q96BF6 587 aa5.35□□□□□ -1.55
CD44-217ENST00000525348 NIPSNAP3AQ9UFN0 247 aaPredicted RBP5.35□□□□□ -1.55
CD44-217ENST00000525348 NOP58Q9Y2X3 529 aaKnown RBP5.35□□□□□ -1.55
CD44-217ENST00000525348 LOC105371045A0A1W2PR82 267 aa5.34□□□□□ -1.55
CD44-217ENST00000525348 TMEM191CA6NGB0 347 aa5.34□□□□□ -1.55
CD44-217ENST00000525348 SUV39H1O43463 412 aa5.34□□□□□ -1.55
CD44-217ENST00000525348 EGR2P11161 476 aaPredicted RBP5.34□□□□□ -1.55
CD44-217ENST00000525348 CKBP12277 381 aa5.34□□□□□ -1.55
CD44-217ENST00000525348 FXR1P51114 621 aaKnown RBP eCLIP5.34□□□□□ -1.55
CD44-217ENST00000525348 HECTD2Q5U5R9 776 aa5.34□□□□□ -1.55
CD44-217ENST00000525348 CMTR2Q8IYT2 770 aaKnown RBP5.34□□□□□ -1.55
CD44-217ENST00000525348 FITM2Q8N6M3 262 aa5.34□□□□□ -1.55
CD44-217ENST00000525348 TBC1D15Q8TC07 691 aa5.34□□□□□ -1.55
CD44-217ENST00000525348 STAG1Q8WVM7 1258 aa5.34□□□□□ -1.55
CD44-217ENST00000525348 CLPTM1LQ96KA5 538 aa5.34□□□□□ -1.55
CD44-217ENST00000525348 RNPEPQ9H4A4 650 aa5.34□□□□□ -1.55
CD44-217ENST00000525348 SLC45A2Q9UMX9 530 aa5.34□□□□□ -1.55
CD44-217ENST00000525348 PIPSLA2A3N6 862 aa5.33□□□□□ -1.56
CD44-217ENST00000525348 LRRC14BA6NHZ5 514 aa5.33□□□□□ -1.56
CD44-217ENST00000525348 B3GALT2O43825 422 aa5.33□□□□□ -1.56
CD44-217ENST00000525348 CDKL5O76039 1030 aa5.33□□□□□ -1.56
CD44-217ENST00000525348 GCP02774 474 aa5.33□□□□□ -1.56
CD44-217ENST00000525348 CD1AP06126 327 aa5.33□□□□□ -1.56
CD44-217ENST00000525348 ALAS1P13196 640 aa5.33□□□□□ -1.56
CD44-217ENST00000525348 CXADRP78310 365 aa5.33□□□□□ -1.56
CD44-217ENST00000525348 CREMQ03060 361 aa5.33□□□□□ -1.56
CD44-217ENST00000525348 GPR149Q86SP6 731 aa5.33□□□□□ -1.56
CD44-217ENST00000525348 Q8NA96 180 aa5.33□□□□□ -1.56
CD44-217ENST00000525348 LINC00476Q8WZB0 136 aa5.33□□□□□ -1.56
CD44-217ENST00000525348 TLR10Q9BXR5 811 aa5.33□□□□□ -1.56
CD44-217ENST00000525348 ALOXE3Q9BYJ1 711 aa5.33□□□□□ -1.56
CD44-217ENST00000525348 SPEF1Q9Y4P9 236 aa5.33□□□□□ -1.56
CD44-217ENST00000525348 HAUS5O94927 633 aa5.32□□□□□ -1.56
CD44-217ENST00000525348 GPANK1O95872 356 aa5.32□□□□□ -1.56
CD44-217ENST00000525348 HLA-DOAP06340 250 aa5.32□□□□□ -1.56
CD44-217ENST00000525348 CCND1P24385 295 aa5.32□□□□□ -1.56
CD44-217ENST00000525348 RECQLP46063 649 aaPredicted RBP5.32□□□□□ -1.56
CD44-217ENST00000525348 FOXI1Q12951 378 aa5.32□□□□□ -1.56
CD44-217ENST00000525348 RAB39AQ14964 217 aa5.32□□□□□ -1.56
CD44-217ENST00000525348 CYP2A13Q16696 494 aa5.32□□□□□ -1.56
CD44-217ENST00000525348 PABPC1LQ4VXU2 614 aaKnown RBP5.32□□□□□ -1.56
CD44-217ENST00000525348 TMEM240Q5SV17 173 aa5.32□□□□□ -1.56
CD44-217ENST00000525348 NUP133Q8WUM0 1156 aa5.32□□□□□ -1.56
CD44-217ENST00000525348 FUBP1Q96AE4 644 aaKnown RBP5.32□□□□□ -1.56
CD44-217ENST00000525348 RNF31Q96EP0 1072 aa5.32□□□□□ -1.56
CD44-217ENST00000525348 VRK1Q99986 396 aaPredicted RBP5.32□□□□□ -1.56
CD44-217ENST00000525348 REXO4Q9GZR2 422 aaKnown RBP5.32□□□□□ -1.56
CD44-217ENST00000525348 KCNE5Q9UJ90 142 aa5.32□□□□□ -1.56
CD44-217ENST00000525348 CFAP20Q9Y6A4 193 aaKnown RBP5.32□□□□□ -1.56
CD44-217ENST00000525348 EPN1Q9Y6I3 576 aaPredicted RBP5.32□□□□□ -1.56
CD44-217ENST00000525348 NT5C1B-RDH14C9J2C7 533 aa5.31□□□□□ -1.56
CD44-217ENST00000525348 SLC43A1O75387 559 aa5.31□□□□□ -1.56
CD44-217ENST00000525348 AGFG2O95081 481 aa5.31□□□□□ -1.56
CD44-217ENST00000525348 NEK2P51955 445 aa5.31□□□□□ -1.56
CD44-217ENST00000525348 EXOSC10Q01780 885 aaKnown RBP5.31□□□□□ -1.56
CD44-217ENST00000525348 SNAPC2Q13487 334 aa5.31□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms