RNA–Protein interactions for RNA: ENST00000521037.1

VPS13B-208, Transcript of vacuolar protein sorting 13 homolog B, human

TSL 5

Gene VPS13B, Length 486 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS13B-208	ENST00000521037	CNPY2	Q9Y2B0	182 aa		4.65	□□□□□ -1.67
VPS13B-208	ENST00000521037	MRPL42	Q9Y6G3	142 aa	Known RBP	4.65	□□□□□ -1.67
VPS13B-208	ENST00000521037	AKAP8	O43823	692 aa	Known RBP	4.64	□□□□□ -1.67
VPS13B-208	ENST00000521037	MARCH6	O60337	910 aa		4.64	□□□□□ -1.67
VPS13B-208	ENST00000521037	EIF5B	O60841	1220 aa	Known RBP	4.64	□□□□□ -1.67
VPS13B-208	ENST00000521037	ALDH1L1	O75891	902 aa		4.64	□□□□□ -1.67
VPS13B-208	ENST00000521037	PF4	P02776	101 aa		4.64	□□□□□ -1.67
VPS13B-208	ENST00000521037	SSB	P05455	408 aa	Known RBP eCLIP	4.64	□□□□□ -1.67
VPS13B-208	ENST00000521037	PROS1	P07225	676 aa		4.64	□□□□□ -1.67
VPS13B-208	ENST00000521037	ACTN1	P12814	892 aa		4.64	□□□□□ -1.67
VPS13B-208	ENST00000521037	ATF7	P17544	494 aa	Predicted RBP	4.64	□□□□□ -1.67
VPS13B-208	ENST00000521037	AOC1	P19801	751 aa		4.64	□□□□□ -1.67
VPS13B-208	ENST00000521037	KCNC1	P48547	511 aa		4.64	□□□□□ -1.67
VPS13B-208	ENST00000521037	USP14	P54578	494 aa		4.64	□□□□□ -1.67
VPS13B-208	ENST00000521037	TIMM10	P62072	90 aa		4.64	□□□□□ -1.67
VPS13B-208	ENST00000521037	CNTN2	Q02246	1040 aa		4.64	□□□□□ -1.67
VPS13B-208	ENST00000521037	LAPTM5	Q13571	262 aa		4.64	□□□□□ -1.67
VPS13B-208	ENST00000521037	ATP2B3	Q16720	1220 aa		4.64	□□□□□ -1.67
VPS13B-208	ENST00000521037	TWISTNB	Q3B726	338 aa	Predicted RBP	4.64	□□□□□ -1.67
VPS13B-208	ENST00000521037	SOWAHC	Q53LP3	525 aa	Predicted RBP	4.64	□□□□□ -1.67
VPS13B-208	ENST00000521037	GALNT18	Q6P9A2	607 aa		4.64	□□□□□ -1.67
VPS13B-208	ENST00000521037	SYCE2	Q6PIF2	218 aa		4.64	□□□□□ -1.67
VPS13B-208	ENST00000521037	RPTN	Q6XPR3	784 aa		4.64	□□□□□ -1.67
VPS13B-208	ENST00000521037	TMC6	Q7Z403	805 aa		4.64	□□□□□ -1.67
VPS13B-208	ENST00000521037	TLK2	Q86UE8	772 aa		4.64	□□□□□ -1.67
VPS13B-208	ENST00000521037	DZIP1	Q86YF9	867 aa	Known RBP	4.64	□□□□□ -1.67
VPS13B-208	ENST00000521037	KREMEN2	Q8NCW0	462 aa		4.64	□□□□□ -1.67
VPS13B-208	ENST00000521037	CYP2W1	Q8TAV3	490 aa		4.64	□□□□□ -1.67
VPS13B-208	ENST00000521037	MORC4	Q8TE76	937 aa		4.64	□□□□□ -1.67
VPS13B-208	ENST00000521037	FCRL2	Q96LA5	508 aa	Predicted RBP	4.64	□□□□□ -1.67
VPS13B-208	ENST00000521037	SPON2	Q9BUD6	331 aa		4.64	□□□□□ -1.67
VPS13B-208	ENST00000521037	RSRP1	Q9BUV0	290 aa		4.64	□□□□□ -1.67
VPS13B-208	ENST00000521037	USP44	Q9H0E7	712 aa		4.64	□□□□□ -1.67
VPS13B-208	ENST00000521037	ERVK13-1	Q9NX77	482 aa		4.64	□□□□□ -1.67
VPS13B-208	ENST00000521037	SLC5A4	Q9NY91	659 aa		4.64	□□□□□ -1.67
VPS13B-208	ENST00000521037	SIRPG	Q9P1W8	387 aa		4.64	□□□□□ -1.67
VPS13B-208	ENST00000521037	ABCF2	Q9UG63	623 aa		4.64	□□□□□ -1.67
VPS13B-208	ENST00000521037	KLHL3	Q9UH77	587 aa		4.64	□□□□□ -1.67
VPS13B-208	ENST00000521037	SAP30BP	Q9UHR5	308 aa	Known RBP	4.64	□□□□□ -1.67
VPS13B-208	ENST00000521037	BARX2	Q9UMQ3	279 aa	Predicted RBP	4.64	□□□□□ -1.67
VPS13B-208	ENST00000521037	NOP58	Q9Y2X3	529 aa	Known RBP	4.64	□□□□□ -1.67
VPS13B-208	ENST00000521037	ABHD14A-ACY1	A0A1B0GW23	586 aa		4.63	□□□□□ -1.67
VPS13B-208	ENST00000521037	ATP2A1	O14983	1001 aa		4.63	□□□□□ -1.67
VPS13B-208	ENST00000521037	CAPNS1	P04632	268 aa		4.63	□□□□□ -1.67
VPS13B-208	ENST00000521037	SYP	P08247	313 aa		4.63	□□□□□ -1.67
VPS13B-208	ENST00000521037	TNFRSF1A	P19438	455 aa		4.63	□□□□□ -1.67
VPS13B-208	ENST00000521037	ZEB1	P37275	1124 aa	Predicted RBP	4.63	□□□□□ -1.67
VPS13B-208	ENST00000521037	STAT3	P40763	770 aa		4.63	□□□□□ -1.67
VPS13B-208	ENST00000521037	MCAM	P43121	646 aa		4.63	□□□□□ -1.67
VPS13B-208	ENST00000521037	DYNLL1	P63167	89 aa	Known RBP	4.63	□□□□□ -1.67
VPS13B-208	ENST00000521037	TNFAIP2	Q03169	654 aa		4.63	□□□□□ -1.67
VPS13B-208	ENST00000521037	PLS1	Q14651	629 aa		4.63	□□□□□ -1.67
VPS13B-208	ENST00000521037	RAB3GAP1	Q15042	981 aa		4.63	□□□□□ -1.67
VPS13B-208	ENST00000521037	LRSAM1	Q6UWE0	723 aa		4.63	□□□□□ -1.67
VPS13B-208	ENST00000521037	NOL8	Q76FK4	1167 aa	Known RBP	4.63	□□□□□ -1.67
VPS13B-208	ENST00000521037	SPICE1	Q8N0Z3	855 aa		4.63	□□□□□ -1.67
VPS13B-208	ENST00000521037	EFHB	Q8N7U6	833 aa		4.63	□□□□□ -1.67
VPS13B-208	ENST00000521037	RUBCN	Q92622	972 aa		4.63	□□□□□ -1.67
VPS13B-208	ENST00000521037	KAT2B	Q92831	832 aa		4.63	□□□□□ -1.67
VPS13B-208	ENST00000521037	MAP4K1	Q92918	833 aa		4.63	□□□□□ -1.67
VPS13B-208	ENST00000521037	TOP1MT	Q969P6	601 aa		4.63	□□□□□ -1.67
VPS13B-208	ENST00000521037	RPGRIP1	Q96KN7	1286 aa		4.63	□□□□□ -1.67
VPS13B-208	ENST00000521037	BBC3	Q96PG8	261 aa	Predicted RBP	4.63	□□□□□ -1.67
VPS13B-208	ENST00000521037	SIL1	Q9H173	461 aa		4.63	□□□□□ -1.67
VPS13B-208	ENST00000521037	SEMA4A	Q9H3S1	761 aa		4.63	□□□□□ -1.67
VPS13B-208	ENST00000521037	KBTBD4	Q9NVX7	518 aa		4.63	□□□□□ -1.67
VPS13B-208	ENST00000521037	AATF	Q9NY61	560 aa	Known RBP eCLIP	4.63	□□□□□ -1.67
VPS13B-208	ENST00000521037	CTNNA3	Q9UI47	895 aa		4.63	□□□□□ -1.67
VPS13B-208	ENST00000521037	TMX2	Q9Y320	296 aa		4.63	□□□□□ -1.67
VPS13B-208	ENST00000521037		Q9Y3F1	56 aa		4.63	□□□□□ -1.67
VPS13B-208	ENST00000521037	INSL6	Q9Y581	213 aa		4.63	□□□□□ -1.67
VPS13B-208	ENST00000521037	TEX15	Q9BXT5	2789 aa		4.63	□□□□□ -1.67
VPS13B-208	ENST00000521037	NLRC5	Q86WI3	1866 aa		4.62	□□□□□ -1.67
VPS13B-208	ENST00000521037	APAF1	O14727	1248 aa		4.62	□□□□□ -1.67
VPS13B-208	ENST00000521037	NCK2	O43639	380 aa		4.62	□□□□□ -1.67
VPS13B-208	ENST00000521037	SIGLEC6	O43699	453 aa		4.62	□□□□□ -1.67
VPS13B-208	ENST00000521037	FLOT1	O75955	427 aa		4.62	□□□□□ -1.67
VPS13B-208	ENST00000521037	CIAO1	O76071	339 aa		4.62	□□□□□ -1.67
VPS13B-208	ENST00000521037	PRAMEF1	O95521	474 aa		4.62	□□□□□ -1.67
VPS13B-208	ENST00000521037	MMP1	P03956	469 aa		4.62	□□□□□ -1.67
VPS13B-208	ENST00000521037	PLA2G1B	P04054	148 aa	Known RBP	4.62	□□□□□ -1.67
VPS13B-208	ENST00000521037	SP9	P0CG40	484 aa		4.62	□□□□□ -1.67
VPS13B-208	ENST00000521037	CKB	P12277	381 aa		4.62	□□□□□ -1.67
VPS13B-208	ENST00000521037	GLUL	P15104	373 aa		4.62	□□□□□ -1.67
VPS13B-208	ENST00000521037	PRKCA	P17252	672 aa		4.62	□□□□□ -1.67
VPS13B-208	ENST00000521037	GART	P22102	1010 aa		4.62	□□□□□ -1.67
VPS13B-208	ENST00000521037	SOX9	P48436	509 aa		4.62	□□□□□ -1.67
VPS13B-208	ENST00000521037	ANAPC15	P60006	121 aa		4.62	□□□□□ -1.67
VPS13B-208	ENST00000521037	ABCB5	Q2M3G0	1257 aa		4.62	□□□□□ -1.67
VPS13B-208	ENST00000521037	LRRFIP1	Q32MZ4	808 aa	Known RBP	4.62	□□□□□ -1.67
VPS13B-208	ENST00000521037	PLEKHG4	Q58EX7	1191 aa		4.62	□□□□□ -1.67
VPS13B-208	ENST00000521037	NFRKB	Q6P4R8	1299 aa		4.62	□□□□□ -1.67
VPS13B-208	ENST00000521037	SESTD1	Q86VW0	696 aa		4.62	□□□□□ -1.67
VPS13B-208	ENST00000521037	PHACTR4	Q8IZ21	702 aa		4.62	□□□□□ -1.67
VPS13B-208	ENST00000521037	ZGPAT	Q8N5A5	531 aa	Known RBP	4.62	□□□□□ -1.67
VPS13B-208	ENST00000521037	SPPL3	Q8TCT6	385 aa		4.62	□□□□□ -1.67
VPS13B-208	ENST00000521037	NELL1	Q92832	810 aa		4.62	□□□□□ -1.67
VPS13B-208	ENST00000521037	SAMD11	Q96NU1	681 aa		4.62	□□□□□ -1.67
VPS13B-208	ENST00000521037	RBM15	Q96T37	977 aa	Known RBP eCLIP	4.62	□□□□□ -1.67
VPS13B-208	ENST00000521037	FEZ1	Q99689	392 aa		4.62	□□□□□ -1.67

Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms