RNA–Protein interactions for RNA: ENST00000519895.5

MCF2-208, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene MCF2, Length 3,346 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-208ENST00000519895 RNF168Q8IYW5 571 aaPredicted RBP3.13□□□□□ -1.91
MCF2-208ENST00000519895 KIAA0319LQ8IZA0 1049 aa3.13□□□□□ -1.91
MCF2-208ENST00000519895 SLC34A3Q8N130 599 aa3.13□□□□□ -1.91
MCF2-208ENST00000519895 LMBR1Q8WVP7 490 aa3.13□□□□□ -1.91
MCF2-208ENST00000519895 TAF4BQ92750 862 aa3.13□□□□□ -1.91
MCF2-208ENST00000519895 MTRQ99707 1265 aa3.13□□□□□ -1.91
MCF2-208ENST00000519895 TMEM117Q9H0C3 514 aa3.13□□□□□ -1.91
MCF2-208ENST00000519895 NCOA5Q9HCD5 579 aaKnown RBP3.13□□□□□ -1.91
MCF2-208ENST00000519895 KBTBD4Q9NVX7 518 aa3.13□□□□□ -1.91
MCF2-208ENST00000519895 TMEM260Q9NX78 707 aa3.13□□□□□ -1.91
MCF2-208ENST00000519895 HDAC6Q9UBN7 1215 aa3.13□□□□□ -1.91
MCF2-208ENST00000519895 TUBE1Q9UJT0 475 aa3.13□□□□□ -1.91
MCF2-208ENST00000519895 NOVA2Q9UNW9 492 aaKnown RBP3.13□□□□□ -1.91
MCF2-208ENST00000519895 EXOC7Q9UPT5 735 aa3.13□□□□□ -1.91
MCF2-208ENST00000519895 DNM3Q9UQ16 869 aa3.13□□□□□ -1.91
MCF2-208ENST00000519895 TNFSF13BQ9Y275 285 aa3.13□□□□□ -1.91
MCF2-208ENST00000519895 MUC22E2RYF6 1773 aaPredicted RBP3.12□□□□□ -1.91
MCF2-208ENST00000519895 EP300Q09472 2414 aaPredicted RBP3.12□□□□□ -1.91
MCF2-208ENST00000519895 MIA3Q5JRA6 1907 aa3.12□□□□□ -1.91
MCF2-208ENST00000519895 SLC37A4O43826 429 aa3.12□□□□□ -1.91
MCF2-208ENST00000519895 CCNT1O60563 726 aaKnown RBP3.12□□□□□ -1.91
MCF2-208ENST00000519895 JAK2O60674 1132 aa3.12□□□□□ -1.91
MCF2-208ENST00000519895 LDHAP00338 332 aaKnown RBP3.12□□□□□ -1.91
MCF2-208ENST00000519895 INSRRP14616 1297 aa3.12□□□□□ -1.91
MCF2-208ENST00000519895 KCNE1P15382 129 aa3.12□□□□□ -1.91
MCF2-208ENST00000519895 GARTP22102 1010 aa3.12□□□□□ -1.91
MCF2-208ENST00000519895 YWHABP31946 246 aaKnown RBP3.12□□□□□ -1.91
MCF2-208ENST00000519895 PPM1AP35813 382 aa3.12□□□□□ -1.91
MCF2-208ENST00000519895 KRT85P78386 507 aa3.12□□□□□ -1.91
MCF2-208ENST00000519895 IKBKEQ14164 716 aa3.12□□□□□ -1.91
MCF2-208ENST00000519895 MEA1Q16626 185 aa3.12□□□□□ -1.91
MCF2-208ENST00000519895 GJC2Q5T442 439 aaPredicted RBP3.12□□□□□ -1.91
MCF2-208ENST00000519895 WDR78Q5VTH9 848 aa3.12□□□□□ -1.91
MCF2-208ENST00000519895 GPR155Q7Z3F1 870 aa3.12□□□□□ -1.91
MCF2-208ENST00000519895 FCHSD1Q86WN1 690 aa3.12□□□□□ -1.91
MCF2-208ENST00000519895 TTC39CQ8N584 583 aa3.12□□□□□ -1.91
MCF2-208ENST00000519895 PSPC1Q8WXF1 523 aaKnown RBP3.12□□□□□ -1.91
MCF2-208ENST00000519895 RAD54LQ92698 747 aa3.12□□□□□ -1.91
MCF2-208ENST00000519895 TOP1MTQ969P6 601 aa3.12□□□□□ -1.91
MCF2-208ENST00000519895 PPP2R3CQ969Q6 453 aa3.12□□□□□ -1.91
MCF2-208ENST00000519895 FAM81BQ96LP2 452 aa3.12□□□□□ -1.91
MCF2-208ENST00000519895 MMTAG2Q9BU76 263 aaKnown RBP3.12□□□□□ -1.91
MCF2-208ENST00000519895 WNT8AQ9H1J5 351 aa3.12□□□□□ -1.91
MCF2-208ENST00000519895 HIPK3Q9H422 1215 aa3.12□□□□□ -1.91
MCF2-208ENST00000519895 TMEM206Q9H813 350 aa3.12□□□□□ -1.91
MCF2-208ENST00000519895 TTC12Q9H892 705 aaPredicted RBP3.12□□□□□ -1.91
MCF2-208ENST00000519895 PTPRHQ9HD43 1115 aa3.12□□□□□ -1.91
MCF2-208ENST00000519895 AAASQ9NRG9 546 aa3.12□□□□□ -1.91
MCF2-208ENST00000519895 HOMER2Q9NSB8 354 aa3.12□□□□□ -1.91
MCF2-208ENST00000519895 AGPAT5Q9NUQ2 364 aa3.12□□□□□ -1.91
MCF2-208ENST00000519895 COMMD8Q9NX08 183 aa3.12□□□□□ -1.91
MCF2-208ENST00000519895 CHMP5Q9NZZ3 219 aa3.12□□□□□ -1.91
MCF2-208ENST00000519895 KLHL42Q9P2K6 505 aa3.12□□□□□ -1.91
MCF2-208ENST00000519895 LRWD1Q9UFC0 647 aa3.12□□□□□ -1.91
MCF2-208ENST00000519895 NBEAQ8NFP9 2946 aa3.12□□□□□ -1.91
MCF2-208ENST00000519895 TTC3P53804 2025 aa3.12□□□□□ -1.91
MCF2-208ENST00000519895 A0A0U1RQF3 1178 aa3.12□□□□□ -1.91
MCF2-208ENST00000519895 C9IYK1 514 aa3.12□□□□□ -1.91
MCF2-208ENST00000519895 ACKR2O00590 384 aa3.12□□□□□ -1.91
MCF2-208ENST00000519895 MAP3K7O43318 606 aa3.12□□□□□ -1.91
MCF2-208ENST00000519895 PI15O43692 258 aa3.12□□□□□ -1.91
MCF2-208ENST00000519895 ZNF862O60290 1169 aa3.12□□□□□ -1.91
MCF2-208ENST00000519895 TDP2O95551 362 aa3.12□□□□□ -1.91
MCF2-208ENST00000519895 CAVIN2O95810 425 aa3.12□□□□□ -1.91
MCF2-208ENST00000519895 PLS3P13797 630 aa3.12□□□□□ -1.91
MCF2-208ENST00000519895 CPA1P15085 419 aa3.12□□□□□ -1.91
MCF2-208ENST00000519895 GTF2H1P32780 548 aa3.12□□□□□ -1.91
MCF2-208ENST00000519895 RPL9P32969 192 aaKnown RBP3.12□□□□□ -1.91
MCF2-208ENST00000519895 INSM1Q01101 510 aaPredicted RBP3.12□□□□□ -1.91
MCF2-208ENST00000519895 NCBP1Q09161 790 aaKnown RBP3.12□□□□□ -1.91
MCF2-208ENST00000519895 ELAVL2Q12926 359 aaKnown RBP3.12□□□□□ -1.91
MCF2-208ENST00000519895 MRPL58Q14197 206 aaKnown RBP3.12□□□□□ -1.91
MCF2-208ENST00000519895 GPNMBQ14956 572 aa3.12□□□□□ -1.91
MCF2-208ENST00000519895 CRTC2Q53ET0 693 aaPredicted RBP3.12□□□□□ -1.91
MCF2-208ENST00000519895 AXDND1Q5T1B0 1012 aaPredicted RBP3.12□□□□□ -1.91
MCF2-208ENST00000519895 SLC24A5Q71RS6 500 aa3.12□□□□□ -1.91
MCF2-208ENST00000519895 ANO5Q75V66 913 aa3.12□□□□□ -1.91
MCF2-208ENST00000519895 EPM2AIP1Q7L775 607 aaPredicted RBP3.12□□□□□ -1.91
MCF2-208ENST00000519895 ZBTB33Q86T24 672 aa3.12□□□□□ -1.91
MCF2-208ENST00000519895 STK11IPQ8N1F8 1099 aa3.12□□□□□ -1.91
MCF2-208ENST00000519895 EFHBQ8N7U6 833 aa3.12□□□□□ -1.91
MCF2-208ENST00000519895 LRRN4Q8WUT4 740 aa3.12□□□□□ -1.91
MCF2-208ENST00000519895 SLC7A3Q8WY07 619 aa3.12□□□□□ -1.91
MCF2-208ENST00000519895 RAD9AQ99638 391 aa3.12□□□□□ -1.91
MCF2-208ENST00000519895 LXNQ9BS40 222 aa3.12□□□□□ -1.91
MCF2-208ENST00000519895 MKNK1Q9BUB5 465 aa3.12□□□□□ -1.91
MCF2-208ENST00000519895 HERC2P3Q9BVR0 1158 aa3.12□□□□□ -1.91
MCF2-208ENST00000519895 RNPEPQ9H4A4 650 aa3.12□□□□□ -1.91
MCF2-208ENST00000519895 PIF1Q9H611 641 aa3.12□□□□□ -1.91
MCF2-208ENST00000519895 PRMT8Q9NR22 394 aaPredicted RBP3.12□□□□□ -1.91
MCF2-208ENST00000519895 FAM13BQ9NYF5 915 aa3.12□□□□□ -1.91
MCF2-208ENST00000519895 GABBR1Q9UBS5 961 aa3.12□□□□□ -1.91
MCF2-208ENST00000519895 HOOK1Q9UJC3 728 aaKnown RBP3.12□□□□□ -1.91
MCF2-208ENST00000519895 COL4A3BPQ9Y5P4 624 aa3.12□□□□□ -1.91
MCF2-208ENST00000519895 A0A1B0GUA9 196 aa3.11□□□□□ -1.91
MCF2-208ENST00000519895 SPTLC2O15270 562 aa3.11□□□□□ -1.91
MCF2-208ENST00000519895 PRPF40AO75400 957 aaKnown RBP3.11□□□□□ -1.91
MCF2-208ENST00000519895 IL18RAPO95256 599 aa3.11□□□□□ -1.91
MCF2-208ENST00000519895 CYP2C9P11712 490 aa3.11□□□□□ -1.91
MCF2-208ENST00000519895 LAG3P18627 525 aa3.11□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms