RNA–Protein interactions for RNA: ENST00000515460.5

NUP54-218, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 849 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-218ENST00000515460 SRPK1Q96SB4 655 aaKnown RBP6.35□□□□□ -1.39
NUP54-218ENST00000515460 ISCA1Q9BUE6 129 aa6.35□□□□□ -1.39
NUP54-218ENST00000515460 SNTG2Q9NY99 539 aa6.35□□□□□ -1.39
NUP54-218ENST00000515460 POLLQ9UGP5 575 aa6.35□□□□□ -1.39
NUP54-218ENST00000515460 ZFP69BQ9UJL9 534 aa6.35□□□□□ -1.39
NUP54-218ENST00000515460 ADAM29Q9UKF5 820 aa6.35□□□□□ -1.39
NUP54-218ENST00000515460 ARFGEF2Q9Y6D5 1785 aa6.35□□□□□ -1.39
NUP54-218ENST00000515460 REV3LO60673 3130 aa6.35□□□□□ -1.39
NUP54-218ENST00000515460 COL2A1P02458 1487 aaPredicted RBP6.34□□□□□ -1.39
NUP54-218ENST00000515460 USP24Q9UPU5 2620 aa6.34□□□□□ -1.39
NUP54-218ENST00000515460 USP9XQ93008 2570 aaPredicted RBP6.34□□□□□ -1.39
NUP54-218ENST00000515460 SH3TC1Q8TE82 1336 aa6.34□□□□□ -1.39
NUP54-218ENST00000515460 MAPK8IP3Q9UPT6 1336 aa6.34□□□□□ -1.39
NUP54-218ENST00000515460 KLHL33A6NCF5 533 aa6.34□□□□□ -1.39
NUP54-218ENST00000515460 H7C1D1 291 aa6.34□□□□□ -1.39
NUP54-218ENST00000515460 WNT9AO14904 365 aa6.34□□□□□ -1.39
NUP54-218ENST00000515460 ZNF623O75123 536 aa6.34□□□□□ -1.39
NUP54-218ENST00000515460 KLHL18O94889 574 aa6.34□□□□□ -1.39
NUP54-218ENST00000515460 FAM153BP0C7A2 387 aa6.34□□□□□ -1.39
NUP54-218ENST00000515460 GPSM2P81274 684 aa6.34□□□□□ -1.39
NUP54-218ENST00000515460 GPR19Q15760 415 aa6.34□□□□□ -1.39
NUP54-218ENST00000515460 SMAD2Q15796 467 aaKnown RBP6.34□□□□□ -1.39
NUP54-218ENST00000515460 FAM47CQ5HY64 1035 aa6.34□□□□□ -1.39
NUP54-218ENST00000515460 ICE2Q659A1 982 aa6.34□□□□□ -1.39
NUP54-218ENST00000515460 SPTY2D1Q68D10 685 aaPredicted RBP6.34□□□□□ -1.39
NUP54-218ENST00000515460 Q6ZUG5 572 aa6.34□□□□□ -1.39
NUP54-218ENST00000515460 GNRHR2Q96P88 292 aa6.34□□□□□ -1.39
NUP54-218ENST00000515460 PPP1R9BQ96SB3 815 aa6.34□□□□□ -1.39
NUP54-218ENST00000515460 VPS11Q9H270 941 aa6.34□□□□□ -1.39
NUP54-218ENST00000515460 CATSPERZQ9NTU4 200 aa6.34□□□□□ -1.39
NUP54-218ENST00000515460 CHPF2Q9P2E5 772 aa6.34□□□□□ -1.39
NUP54-218ENST00000515460 ARHGAP20Q9P2F6 1191 aa6.34□□□□□ -1.39
NUP54-218ENST00000515460 MRPS23Q9Y3D9 190 aaKnown RBP6.34□□□□□ -1.39
NUP54-218ENST00000515460 TCAF1Q9Y4C2 921 aa6.34□□□□□ -1.39
NUP54-218ENST00000515460 GCN1Q92616 2671 aaKnown RBP6.33□□□□□ -1.4
NUP54-218ENST00000515460 CDHR2Q9BYE9 1310 aa6.33□□□□□ -1.4
NUP54-218ENST00000515460 RIF1Q5UIP0 2472 aaKnown RBP6.33□□□□□ -1.4
NUP54-218ENST00000515460 GOLGA6L6A8MZA4 724 aa6.33□□□□□ -1.4
NUP54-218ENST00000515460 PATE3B3GLJ2 98 aa6.33□□□□□ -1.4
NUP54-218ENST00000515460 GOLGA6L22H0YM25 854 aa6.33□□□□□ -1.4
NUP54-218ENST00000515460 MPHOSPH10O00566 681 aaKnown RBP6.33□□□□□ -1.4
NUP54-218ENST00000515460 SUV39H1O43463 412 aa6.33□□□□□ -1.4
NUP54-218ENST00000515460 EFCAB14O75071 495 aa6.33□□□□□ -1.4
NUP54-218ENST00000515460 C6orf222P0C671 652 aaPredicted RBP6.33□□□□□ -1.4
NUP54-218ENST00000515460 KCNQ1P51787 676 aa6.33□□□□□ -1.4
NUP54-218ENST00000515460 HMGA2P52926 109 aa6.33□□□□□ -1.4
NUP54-218ENST00000515460 PFKPQ01813 784 aa6.33□□□□□ -1.4
NUP54-218ENST00000515460 SP3Q02447 781 aa6.33□□□□□ -1.4
NUP54-218ENST00000515460 TFF2Q03403 129 aa6.33□□□□□ -1.4
NUP54-218ENST00000515460 SREBF2Q12772 1141 aa6.33□□□□□ -1.4
NUP54-218ENST00000515460 ZRSR2Q15696 482 aaKnown RBP6.33□□□□□ -1.4
NUP54-218ENST00000515460 CRY1Q16526 586 aa6.33□□□□□ -1.4
NUP54-218ENST00000515460 FOXB2Q5VYV0 432 aa6.33□□□□□ -1.4
NUP54-218ENST00000515460 CD276Q5ZPR3 534 aa6.33□□□□□ -1.4
NUP54-218ENST00000515460 RALYLQ86SE5 291 aaKnown RBP6.33□□□□□ -1.4
NUP54-218ENST00000515460 CCDC146Q8IYE0 955 aa6.33□□□□□ -1.4
NUP54-218ENST00000515460 SDR16C5Q8N3Y7 309 aa6.33□□□□□ -1.4
NUP54-218ENST00000515460 PDCL2Q8N4E4 241 aa6.33□□□□□ -1.4
NUP54-218ENST00000515460 PLBD2Q8NHP8 589 aa6.33□□□□□ -1.4
NUP54-218ENST00000515460 CDCA5Q96FF9 252 aa6.33□□□□□ -1.4
NUP54-218ENST00000515460 EXOC2Q96KP1 924 aa6.33□□□□□ -1.4
NUP54-218ENST00000515460 LRRC37BQ96QE4 947 aa6.33□□□□□ -1.4
NUP54-218ENST00000515460 ZNF747Q9BV97 191 aa6.33□□□□□ -1.4
NUP54-218ENST00000515460 MEGF9Q9H1U4 602 aa6.33□□□□□ -1.4
NUP54-218ENST00000515460 SUDS3Q9H7L9 328 aaPredicted RBP6.33□□□□□ -1.4
NUP54-218ENST00000515460 DBNDD1Q9H9R9 158 aa6.33□□□□□ -1.4
NUP54-218ENST00000515460 GRPEL1Q9HAV7 217 aa6.33□□□□□ -1.4
NUP54-218ENST00000515460 ANAPC4Q9UJX5 808 aa6.33□□□□□ -1.4
NUP54-218ENST00000515460 PAXBP1Q9Y5B6 917 aa6.33□□□□□ -1.4
NUP54-218ENST00000515460 PCDHA8Q9Y5H6 950 aa6.33□□□□□ -1.4
NUP54-218ENST00000515460 RTL9Q8NET4 1388 aa6.32□□□□□ -1.4
NUP54-218ENST00000515460 ZSWIM8A7E2V4 1837 aa6.32□□□□□ -1.4
NUP54-218ENST00000515460 ASTN2O75129 1339 aaPredicted RBP6.32□□□□□ -1.4
NUP54-218ENST00000515460 DMDP11532 3685 aa6.32□□□□□ -1.4
NUP54-218ENST00000515460 KDM3BQ7LBC6 1761 aa6.32□□□□□ -1.4
NUP54-218ENST00000515460 CCDC163A0A0D9SF12 145 aa6.32□□□□□ -1.4
NUP54-218ENST00000515460 CCDC196A0A1B0GTZ2 297 aa6.32□□□□□ -1.4
NUP54-218ENST00000515460 ARVCFO00192 962 aa6.32□□□□□ -1.4
NUP54-218ENST00000515460 ECE2O60344 883 aa6.32□□□□□ -1.4
NUP54-218ENST00000515460 KNG1P01042 644 aa6.32□□□□□ -1.4
NUP54-218ENST00000515460 GJB1P08034 283 aa6.32□□□□□ -1.4
NUP54-218ENST00000515460 VIL1P09327 827 aaKnown RBP6.32□□□□□ -1.4
NUP54-218ENST00000515460 CCL5P13501 91 aa6.32□□□□□ -1.4
NUP54-218ENST00000515460 GJA4P35212 333 aa6.32□□□□□ -1.4
NUP54-218ENST00000515460 ID4P47928 161 aa6.32□□□□□ -1.4
NUP54-218ENST00000515460 RPS8P62241 208 aaKnown RBP6.32□□□□□ -1.4
NUP54-218ENST00000515460 CRHR2Q13324 411 aa6.32□□□□□ -1.4
NUP54-218ENST00000515460 FIGNQ5HY92 759 aa6.32□□□□□ -1.4
NUP54-218ENST00000515460 SPDYAQ5MJ70 313 aa6.32□□□□□ -1.4
NUP54-218ENST00000515460 BTBD8Q5XKL5 378 aa6.32□□□□□ -1.4
NUP54-218ENST00000515460 CRIP3Q6Q6R5 217 aa6.32□□□□□ -1.4
NUP54-218ENST00000515460 ARHGAP36Q6ZRI8 547 aa6.32□□□□□ -1.4
NUP54-218ENST00000515460 C16orf59Q7L2K0 433 aa6.32□□□□□ -1.4
NUP54-218ENST00000515460 CCDC91Q7Z6B0 441 aa6.32□□□□□ -1.4
NUP54-218ENST00000515460 ZC3H7AQ8IWR0 971 aaKnown RBP6.32□□□□□ -1.4
NUP54-218ENST00000515460 TBC1D16Q8TBP0 767 aa6.32□□□□□ -1.4
NUP54-218ENST00000515460 Q8TCH9 128 aa6.32□□□□□ -1.4
NUP54-218ENST00000515460 DIS3LQ8TF46 1054 aaKnown RBP6.32□□□□□ -1.4
NUP54-218ENST00000515460 U2AF1L4Q8WU68 220 aaKnown RBP6.32□□□□□ -1.4
NUP54-218ENST00000515460 PAWRQ96IZ0 340 aaKnown RBP6.32□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms